NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|323512217|gb|ADX87675|]
View 

internal virion protein D [Vibrio phage ICP3_2007_A]

Protein Classification

amidase( domain architecture ID 11475967)

amidase similar to N-acetylmuramoyl-L-alanine amidase, which hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PHA00368 PHA00368
internal virion protein D
 1-1127 0e+00

internal virion protein D


:

Pssm-ID: 222785 [Multi-domain]  Cd Length: 1315  Bit Score: 1753.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217    1 MANLEDQLSEIRQPVSMDAASFTKQEAQAQAFQPEPTFEELQSQV-------------------EQPDVGF--------- 52
Cdd:PHA00368  132 RNYLRNLLDVAKSPKSGDLESFGGITPKAKGIPAEAAFEGIGKKGkvgtelpeshgfsvegkeqEAPNVPFakdfweatg 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217   53 -----------FEGTGEASSASLATSPLGMAYRAYERPVD-DIVWDVFRPSFANTYEFSDEDIEEIRQSGLPASSFGALE 120
Cdd:PHA00368  212 etldeansrstFFGFGDATEAELSNSVLGVAFRAGRRDDGfDVFKDVFTPTRWNSHIWTPEELEKIRTEVKNPAYINVVT 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  121 GAsSPENLRELIKLTKENLEYEKKIQQAGLGGQIIGGVVGAAGDPLSYVPMANSL-KGMSLLNKTLVRGVEGAAVGLASE 199
Cdd:PHA00368  292 GG-SPENLDELIKLANENFEYDARAAEAGLGAKLSAGIIGAGVDPLSYVPMAGVTgKGFKLVNKALVVGAQSAALNVASE 370

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  200 KLRSGTTGIEADYSMAAITGAVFSSGLGLLGDGLEN-LRNTG------------VRLEARESSRNAN----TNVDSSQAI 262
Cdd:PHA00368  371 GLRTSVAGGEAHYAEAALGGALFGGGMSAISDAVAAgLRRSGetevvnefagpaMRLEARETARNAGgedlSRMPPSNDR 450

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  263 ELAATEGTRYVPHPEEEGAVVTRDGTIISESNPVNPQTIEQFAQVDPERSAKGVRLGGFTELGLTIMDSDNVTVRQIGEG 342
Cdd:PHA00368  451 FLSDHNGVPYADLPTEPGAVVLRDGSILSDSNPLNPKTLKEFAEVDPERAAKGIKLGGFTEIGLKTLRSENAEVRGIASD 530

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  343 LVRSPVGTQSGGRGKAGATASDIKERLDSTDHVSYNAIIKGMEDVLNDP--ANMNLKGSREDMEALVYRKIVHAIEDQtg 420
Cdd:PHA00368  531 LVRSPTGMQSGSSGKFGATASDIKERLHSTDQRTYNDLYDAMEDAMKDPefSTGGAKMSREAARQEIYRRVALAIERP-- 608

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  421 EALQFLSEAEKKLMQTVKQHFDKKGEYLKDPRLFGNDKAQPILKSSRHEGTYVPQVYDNAAKANAIVRFGGKDGLKEAIK 500
Cdd:PHA00368  609 ELQANLTKAERKVMDILKEHFDLKREMMENPAIFGNTKAVSIFPGSRHKGTYVPHVYDRAAKALYIQRLGGPDGLQEAIA 688

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  501 KSWMTSFESRPTVKARFQEFFKdELQGIemdKVDVKLKELVEDYAEKKAYGISNSDEFSYSSVLEESLDFLQGIENNKFL 580
Cdd:PHA00368  689 KSWLTSYRSRPEVKARVDEFLK-ELHGI---DVKEVTPEMVEKYAMDKAYGISHTDQFTRSSVIEENIEGLVGIENNSFL 764

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  581 EARNLFDSDMNVLMPDGQTFSVNDLRSYDMGHIMQSYDRRVNGDVAIMGATGKSTKELKDELVALEKSIGADGKGKRDVE 660
Cdd:PHA00368  765 EARNLFDSDMSVTLPDGQTFSVNDLRDFDMKRIMPAYDRRVNGDIAIMGGTGKTTKELKDEILALDKKAEGDGKLKGEVE 844

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  661 ALKDTIKILTGRARRDPDSAFDHIARSLTDLSFTTKNAYMGAMNVTEIAGMVAKGNVKALTRGVPLLGEWITkRATKMPK 740
Cdd:PHA00368  845 ALKDTVKILTGRARRNPDTAFETALRSLNDLSFFAKNAYMGAQNITEIAGMLAKGNVRALLHGIPILRDLAF-RNKPVSA 923

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  741 EELQELHGALFGQEVFNLMRPSYGRFKERIQETTPLGETSAKALAGLRYATQEAAARNPFTTFMNASTNYMIDSARMGTI 820
Cdd:PHA00368  924 SELKELHGMLFGKELDQLIRPSRQDIVQRLRETTDTGPAVANVVGTLKYATQELAARSPFTKLLNGTTNYILDAARQGVL 1003

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  821 ADVANHALFGSKT-MFDERMLKSSSVTSEQFENVKQLIREYATVDSNGYIKINNKSAFASDPRAMDLWRLGDKMADEAIL 899
Cdd:PHA00368 1004 GDVVSAALTGKKTkWFKERFLKSASISPEQWEGIKQLIREHVTRGADGKFTIKDKQAFASDPRAMDLWRLADKVADETML 1083

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  900 RPTKVSMQNTKAYGSLVQLGMQFKSFTIKSLNGRTIRAIYEGTKNGRAIDQTIAAVLSMGLAAGFYAIRAQVAAQGIPEA 979
Cdd:PHA00368 1084 RPHKVSLQDSKAFGALVKMVLQFKSFVIKSLNSKFIRSFYEATKNNRAIDMALTHVISMGLAGGYYVAQAHVKAYGLPEE 1163

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  980 QRQEYLDNALNPKMVAYAAVSRSSIVGSPLGLFNMFAAPLGFDPAKQVRTSILPTP----PVERDKGAMLYAPRAGelfG 1055
Cdd:PHA00368 1164 QRKEYLKNALDPTMIAYAALSRSSHLGAPLSIANMVAGPLGFDDAKMVRSTILPKGekerDPNKAMTSRDVAGNIG---G 1240

                        1130      1140      1150      1160      1170      1180      1190
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 323512217 1056 GFLEQVPALGVIGSGYQVGSNAIGMMGATG-YDEIQYRTGLYNGLKGLIPNDPVSQAVLLGVFEEQGIMQRMK 1127
Cdd:PHA00368 1241 NLLEQVPALGFAGNVGATGYNAAGVLTAPNkPTERDYMTGLMNTTRELVPNDPLSQQLLLKIYEANGIHIKER 1313
 
Name Accession Description Interval E-value
PHA00368 PHA00368
internal virion protein D
 1-1127 0e+00

internal virion protein D


Pssm-ID: 222785 [Multi-domain]  Cd Length: 1315  Bit Score: 1753.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217    1 MANLEDQLSEIRQPVSMDAASFTKQEAQAQAFQPEPTFEELQSQV-------------------EQPDVGF--------- 52
Cdd:PHA00368  132 RNYLRNLLDVAKSPKSGDLESFGGITPKAKGIPAEAAFEGIGKKGkvgtelpeshgfsvegkeqEAPNVPFakdfweatg 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217   53 -----------FEGTGEASSASLATSPLGMAYRAYERPVD-DIVWDVFRPSFANTYEFSDEDIEEIRQSGLPASSFGALE 120
Cdd:PHA00368  212 etldeansrstFFGFGDATEAELSNSVLGVAFRAGRRDDGfDVFKDVFTPTRWNSHIWTPEELEKIRTEVKNPAYINVVT 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  121 GAsSPENLRELIKLTKENLEYEKKIQQAGLGGQIIGGVVGAAGDPLSYVPMANSL-KGMSLLNKTLVRGVEGAAVGLASE 199
Cdd:PHA00368  292 GG-SPENLDELIKLANENFEYDARAAEAGLGAKLSAGIIGAGVDPLSYVPMAGVTgKGFKLVNKALVVGAQSAALNVASE 370

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  200 KLRSGTTGIEADYSMAAITGAVFSSGLGLLGDGLEN-LRNTG------------VRLEARESSRNAN----TNVDSSQAI 262
Cdd:PHA00368  371 GLRTSVAGGEAHYAEAALGGALFGGGMSAISDAVAAgLRRSGetevvnefagpaMRLEARETARNAGgedlSRMPPSNDR 450

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  263 ELAATEGTRYVPHPEEEGAVVTRDGTIISESNPVNPQTIEQFAQVDPERSAKGVRLGGFTELGLTIMDSDNVTVRQIGEG 342
Cdd:PHA00368  451 FLSDHNGVPYADLPTEPGAVVLRDGSILSDSNPLNPKTLKEFAEVDPERAAKGIKLGGFTEIGLKTLRSENAEVRGIASD 530

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  343 LVRSPVGTQSGGRGKAGATASDIKERLDSTDHVSYNAIIKGMEDVLNDP--ANMNLKGSREDMEALVYRKIVHAIEDQtg 420
Cdd:PHA00368  531 LVRSPTGMQSGSSGKFGATASDIKERLHSTDQRTYNDLYDAMEDAMKDPefSTGGAKMSREAARQEIYRRVALAIERP-- 608

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  421 EALQFLSEAEKKLMQTVKQHFDKKGEYLKDPRLFGNDKAQPILKSSRHEGTYVPQVYDNAAKANAIVRFGGKDGLKEAIK 500
Cdd:PHA00368  609 ELQANLTKAERKVMDILKEHFDLKREMMENPAIFGNTKAVSIFPGSRHKGTYVPHVYDRAAKALYIQRLGGPDGLQEAIA 688

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  501 KSWMTSFESRPTVKARFQEFFKdELQGIemdKVDVKLKELVEDYAEKKAYGISNSDEFSYSSVLEESLDFLQGIENNKFL 580
Cdd:PHA00368  689 KSWLTSYRSRPEVKARVDEFLK-ELHGI---DVKEVTPEMVEKYAMDKAYGISHTDQFTRSSVIEENIEGLVGIENNSFL 764

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  581 EARNLFDSDMNVLMPDGQTFSVNDLRSYDMGHIMQSYDRRVNGDVAIMGATGKSTKELKDELVALEKSIGADGKGKRDVE 660
Cdd:PHA00368  765 EARNLFDSDMSVTLPDGQTFSVNDLRDFDMKRIMPAYDRRVNGDIAIMGGTGKTTKELKDEILALDKKAEGDGKLKGEVE 844

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  661 ALKDTIKILTGRARRDPDSAFDHIARSLTDLSFTTKNAYMGAMNVTEIAGMVAKGNVKALTRGVPLLGEWITkRATKMPK 740
Cdd:PHA00368  845 ALKDTVKILTGRARRNPDTAFETALRSLNDLSFFAKNAYMGAQNITEIAGMLAKGNVRALLHGIPILRDLAF-RNKPVSA 923

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  741 EELQELHGALFGQEVFNLMRPSYGRFKERIQETTPLGETSAKALAGLRYATQEAAARNPFTTFMNASTNYMIDSARMGTI 820
Cdd:PHA00368  924 SELKELHGMLFGKELDQLIRPSRQDIVQRLRETTDTGPAVANVVGTLKYATQELAARSPFTKLLNGTTNYILDAARQGVL 1003

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  821 ADVANHALFGSKT-MFDERMLKSSSVTSEQFENVKQLIREYATVDSNGYIKINNKSAFASDPRAMDLWRLGDKMADEAIL 899
Cdd:PHA00368 1004 GDVVSAALTGKKTkWFKERFLKSASISPEQWEGIKQLIREHVTRGADGKFTIKDKQAFASDPRAMDLWRLADKVADETML 1083

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  900 RPTKVSMQNTKAYGSLVQLGMQFKSFTIKSLNGRTIRAIYEGTKNGRAIDQTIAAVLSMGLAAGFYAIRAQVAAQGIPEA 979
Cdd:PHA00368 1084 RPHKVSLQDSKAFGALVKMVLQFKSFVIKSLNSKFIRSFYEATKNNRAIDMALTHVISMGLAGGYYVAQAHVKAYGLPEE 1163

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  980 QRQEYLDNALNPKMVAYAAVSRSSIVGSPLGLFNMFAAPLGFDPAKQVRTSILPTP----PVERDKGAMLYAPRAGelfG 1055
Cdd:PHA00368 1164 QRKEYLKNALDPTMIAYAALSRSSHLGAPLSIANMVAGPLGFDDAKMVRSTILPKGekerDPNKAMTSRDVAGNIG---G 1240

                        1130      1140      1150      1160      1170      1180      1190
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 323512217 1056 GFLEQVPALGVIGSGYQVGSNAIGMMGATG-YDEIQYRTGLYNGLKGLIPNDPVSQAVLLGVFEEQGIMQRMK 1127
Cdd:PHA00368 1241 NLLEQVPALGFAGNVGATGYNAAGVLTAPNkPTERDYMTGLMNTTRELVPNDPLSQQLLLKIYEANGIHIKER 1313
 
Name Accession Description Interval E-value
PHA00368 PHA00368
internal virion protein D
 1-1127 0e+00

internal virion protein D


Pssm-ID: 222785 [Multi-domain]  Cd Length: 1315  Bit Score: 1753.13  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217    1 MANLEDQLSEIRQPVSMDAASFTKQEAQAQAFQPEPTFEELQSQV-------------------EQPDVGF--------- 52
Cdd:PHA00368  132 RNYLRNLLDVAKSPKSGDLESFGGITPKAKGIPAEAAFEGIGKKGkvgtelpeshgfsvegkeqEAPNVPFakdfweatg 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217   53 -----------FEGTGEASSASLATSPLGMAYRAYERPVD-DIVWDVFRPSFANTYEFSDEDIEEIRQSGLPASSFGALE 120
Cdd:PHA00368  212 etldeansrstFFGFGDATEAELSNSVLGVAFRAGRRDDGfDVFKDVFTPTRWNSHIWTPEELEKIRTEVKNPAYINVVT 291

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  121 GAsSPENLRELIKLTKENLEYEKKIQQAGLGGQIIGGVVGAAGDPLSYVPMANSL-KGMSLLNKTLVRGVEGAAVGLASE 199
Cdd:PHA00368  292 GG-SPENLDELIKLANENFEYDARAAEAGLGAKLSAGIIGAGVDPLSYVPMAGVTgKGFKLVNKALVVGAQSAALNVASE 370

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  200 KLRSGTTGIEADYSMAAITGAVFSSGLGLLGDGLEN-LRNTG------------VRLEARESSRNAN----TNVDSSQAI 262
Cdd:PHA00368  371 GLRTSVAGGEAHYAEAALGGALFGGGMSAISDAVAAgLRRSGetevvnefagpaMRLEARETARNAGgedlSRMPPSNDR 450

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  263 ELAATEGTRYVPHPEEEGAVVTRDGTIISESNPVNPQTIEQFAQVDPERSAKGVRLGGFTELGLTIMDSDNVTVRQIGEG 342
Cdd:PHA00368  451 FLSDHNGVPYADLPTEPGAVVLRDGSILSDSNPLNPKTLKEFAEVDPERAAKGIKLGGFTEIGLKTLRSENAEVRGIASD 530

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  343 LVRSPVGTQSGGRGKAGATASDIKERLDSTDHVSYNAIIKGMEDVLNDP--ANMNLKGSREDMEALVYRKIVHAIEDQtg 420
Cdd:PHA00368  531 LVRSPTGMQSGSSGKFGATASDIKERLHSTDQRTYNDLYDAMEDAMKDPefSTGGAKMSREAARQEIYRRVALAIERP-- 608

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  421 EALQFLSEAEKKLMQTVKQHFDKKGEYLKDPRLFGNDKAQPILKSSRHEGTYVPQVYDNAAKANAIVRFGGKDGLKEAIK 500
Cdd:PHA00368  609 ELQANLTKAERKVMDILKEHFDLKREMMENPAIFGNTKAVSIFPGSRHKGTYVPHVYDRAAKALYIQRLGGPDGLQEAIA 688

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  501 KSWMTSFESRPTVKARFQEFFKdELQGIemdKVDVKLKELVEDYAEKKAYGISNSDEFSYSSVLEESLDFLQGIENNKFL 580
Cdd:PHA00368  689 KSWLTSYRSRPEVKARVDEFLK-ELHGI---DVKEVTPEMVEKYAMDKAYGISHTDQFTRSSVIEENIEGLVGIENNSFL 764

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  581 EARNLFDSDMNVLMPDGQTFSVNDLRSYDMGHIMQSYDRRVNGDVAIMGATGKSTKELKDELVALEKSIGADGKGKRDVE 660
Cdd:PHA00368  765 EARNLFDSDMSVTLPDGQTFSVNDLRDFDMKRIMPAYDRRVNGDIAIMGGTGKTTKELKDEILALDKKAEGDGKLKGEVE 844

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  661 ALKDTIKILTGRARRDPDSAFDHIARSLTDLSFTTKNAYMGAMNVTEIAGMVAKGNVKALTRGVPLLGEWITkRATKMPK 740
Cdd:PHA00368  845 ALKDTVKILTGRARRNPDTAFETALRSLNDLSFFAKNAYMGAQNITEIAGMLAKGNVRALLHGIPILRDLAF-RNKPVSA 923

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  741 EELQELHGALFGQEVFNLMRPSYGRFKERIQETTPLGETSAKALAGLRYATQEAAARNPFTTFMNASTNYMIDSARMGTI 820
Cdd:PHA00368  924 SELKELHGMLFGKELDQLIRPSRQDIVQRLRETTDTGPAVANVVGTLKYATQELAARSPFTKLLNGTTNYILDAARQGVL 1003

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  821 ADVANHALFGSKT-MFDERMLKSSSVTSEQFENVKQLIREYATVDSNGYIKINNKSAFASDPRAMDLWRLGDKMADEAIL 899
Cdd:PHA00368 1004 GDVVSAALTGKKTkWFKERFLKSASISPEQWEGIKQLIREHVTRGADGKFTIKDKQAFASDPRAMDLWRLADKVADETML 1083

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  900 RPTKVSMQNTKAYGSLVQLGMQFKSFTIKSLNGRTIRAIYEGTKNGRAIDQTIAAVLSMGLAAGFYAIRAQVAAQGIPEA 979
Cdd:PHA00368 1084 RPHKVSLQDSKAFGALVKMVLQFKSFVIKSLNSKFIRSFYEATKNNRAIDMALTHVISMGLAGGYYVAQAHVKAYGLPEE 1163

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512217  980 QRQEYLDNALNPKMVAYAAVSRSSIVGSPLGLFNMFAAPLGFDPAKQVRTSILPTP----PVERDKGAMLYAPRAGelfG 1055
Cdd:PHA00368 1164 QRKEYLKNALDPTMIAYAALSRSSHLGAPLSIANMVAGPLGFDDAKMVRSTILPKGekerDPNKAMTSRDVAGNIG---G 1240

                        1130      1140      1150      1160      1170      1180      1190
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 323512217 1056 GFLEQVPALGVIGSGYQVGSNAIGMMGATG-YDEIQYRTGLYNGLKGLIPNDPVSQAVLLGVFEEQGIMQRMK 1127
Cdd:PHA00368 1241 NLLEQVPALGFAGNVGATGYNAAGVLTAPNkPTERDYMTGLMNTTRELVPNDPLSQQLLLKIYEANGIHIKER 1313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH