NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|323512214|gb|ADX87672|]
View 

internal virion protein A [Vibrio phage ICP3_2007_A]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Phage_T7_Gp13 super family cl17113
Bacteriophage T7, probable scaffold protein Gp13; This family represents Bacteriophage T7 Gp13, ...
 16-137 4.41e-19

Bacteriophage T7, probable scaffold protein Gp13; This family represents Bacteriophage T7 Gp13, which may act as an organizer for the correct association of several proteins in the surrounding of the head-tail connector protein gp8.


The actual alignment was detected with superfamily member PHA00432:

Pssm-ID: 271795  Cd Length: 137  Bit Score: 78.56  E-value: 4.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512214  16 VDFLSENMAEADVKEvFVSSGRTPREVLVESldicqkvyVIVEMTKGEPFAIGGyTHAGICWFLCSNKVETFNKAERISF 95
Cdd:PHA00432   9 RDFDVFNPSFEDILE-AKAYGIEPSFPPDSE--------CVTLSLDGFVLAIGG-NQGDQVWFVTSDQVWRLTKKEKREF 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 323512214  96 RAELELNLEKALKVHPKLWNFIWSGNPAHIRFTESCGARLGN 137
Cdd:PHA00432  79 RKLIMEYRDMMLDQYPSLWNYVWVGNKSHIRFLKSIGAVFHN 120
 
Name Accession Description Interval E-value
PHA00432 PHA00432
internal virion protein A
 16-137 4.41e-19

internal virion protein A


Pssm-ID: 177277  Cd Length: 137  Bit Score: 78.56  E-value: 4.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512214  16 VDFLSENMAEADVKEvFVSSGRTPREVLVESldicqkvyVIVEMTKGEPFAIGGyTHAGICWFLCSNKVETFNKAERISF 95
Cdd:PHA00432   9 RDFDVFNPSFEDILE-AKAYGIEPSFPPDSE--------CVTLSLDGFVLAIGG-NQGDQVWFVTSDQVWRLTKKEKREF 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 323512214  96 RAELELNLEKALKVHPKLWNFIWSGNPAHIRFTESCGARLGN 137
Cdd:PHA00432  79 RKLIMEYRDMMLDQYPSLWNYVWVGNKSHIRFLKSIGAVFHN 120
Phage_T7_Gp13 pfam11090
Bacteriophage T7, probable scaffold protein Gp13; This family represents Bacteriophage T7 Gp13, ...
 62-137 4.38e-17

Bacteriophage T7, probable scaffold protein Gp13; This family represents Bacteriophage T7 Gp13, which may act as an organizer for the correct association of several proteins in the surrounding of the head-tail connector protein gp8.


Pssm-ID: 151535  Cd Length: 86  Bit Score: 71.75  E-value: 4.38e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 323512214   62 GEPFAIGGyTHAGICWFLCSNKVETFNKAERISFRAELELNLEKALKVHPKLWNFIWSGNPAHIRFTESCGARLGN 137
Cdd:pfam11090   9 GLVLAIGG-NQGDQVWFVTSDVVWRLTKKEKREFRKLIHEYRDGMLDQYQTIWNYVWVGNKSHIRFLKSIGAVFHN 83
 
Name Accession Description Interval E-value
PHA00432 PHA00432
internal virion protein A
 16-137 4.41e-19

internal virion protein A


Pssm-ID: 177277  Cd Length: 137  Bit Score: 78.56  E-value: 4.41e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 323512214  16 VDFLSENMAEADVKEvFVSSGRTPREVLVESldicqkvyVIVEMTKGEPFAIGGyTHAGICWFLCSNKVETFNKAERISF 95
Cdd:PHA00432   9 RDFDVFNPSFEDILE-AKAYGIEPSFPPDSE--------CVTLSLDGFVLAIGG-NQGDQVWFVTSDQVWRLTKKEKREF 78

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 323512214  96 RAELELNLEKALKVHPKLWNFIWSGNPAHIRFTESCGARLGN 137
Cdd:PHA00432  79 RKLIMEYRDMMLDQYPSLWNYVWVGNKSHIRFLKSIGAVFHN 120
Phage_T7_Gp13 pfam11090
Bacteriophage T7, probable scaffold protein Gp13; This family represents Bacteriophage T7 Gp13, ...
 62-137 4.38e-17

Bacteriophage T7, probable scaffold protein Gp13; This family represents Bacteriophage T7 Gp13, which may act as an organizer for the correct association of several proteins in the surrounding of the head-tail connector protein gp8.


Pssm-ID: 151535  Cd Length: 86  Bit Score: 71.75  E-value: 4.38e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 323512214   62 GEPFAIGGyTHAGICWFLCSNKVETFNKAERISFRAELELNLEKALKVHPKLWNFIWSGNPAHIRFTESCGARLGN 137
Cdd:pfam11090   9 GLVLAIGG-NQGDQVWFVTSDVVWRLTKKEKREFRKLIHEYRDGMLDQYQTIWNYVWVGNKSHIRFLKSIGAVFHN 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH