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Conserved domains on  [gi|32140770|gb|AAP70043|]
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replication protein E [Shuttle vector pLEIItd+KR'']

Protein Classification

PriCT_1 domain-containing protein( domain architecture ID 10554956)

PriCT_1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PriCT_1 pfam08708
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 260-323 2.43e-18

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


:

Pssm-ID: 430166  Cd Length: 64  Bit Score: 78.88  E-value: 2.43e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 32140770   260 FSGEKGLIGRNNVMFTLSLAYFSSGYSIETCEYNMFEFNNRLDQPLEEKEVIKIVRSAYSENYQ 323
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGIDRESVLALLHALNSNLEPPLDESEVEKTVKSVYRYVYA 64
IscR super family cl46820
DNA-binding transcriptional regulator, IscR family [Transcription];
393-436 7.34e-03

DNA-binding transcriptional regulator, IscR family [Transcription];


The actual alignment was detected with superfamily member COG1959:

Pssm-ID: 481160  Cd Length: 141  Bit Score: 37.13  E-value: 7.34e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 32140770 393 TKKEIREVLGIPERTLDKLLKVLKANQeiFFKIKPGRNGGIQLA 436
Cdd:COG1959  26 TSKEIAERQGISPSYLEKILQKLRKAG--LVESVRGPGGGYRLA 67
 
Name Accession Description Interval E-value
PriCT_1 pfam08708
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 260-323 2.43e-18

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 430166  Cd Length: 64  Bit Score: 78.88  E-value: 2.43e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 32140770   260 FSGEKGLIGRNNVMFTLSLAYFSSGYSIETCEYNMFEFNNRLDQPLEEKEVIKIVRSAYSENYQ 323
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGIDRESVLALLHALNSNLEPPLDESEVEKTVKSVYRYVYA 64
PriCT_1 smart00942
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 268-319 4.68e-03

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 214926  Cd Length: 66  Bit Score: 35.77  E-value: 4.68e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 32140770    268 GRNNVMFTLSLAYFSSGY-SIETCEYNMFEFNNRLDQ-PLEEKEVIKIVRSAYS 319
Cdd:smart00942   9 NRNNTLFRLAGRLLRRGYvDEEEAYALLLAANSANCNpPLPERELEKTAESAYR 62
IscR COG1959
DNA-binding transcriptional regulator, IscR family [Transcription];
393-436 7.34e-03

DNA-binding transcriptional regulator, IscR family [Transcription];


Pssm-ID: 441562  Cd Length: 141  Bit Score: 37.13  E-value: 7.34e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 32140770 393 TKKEIREVLGIPERTLDKLLKVLKANQeiFFKIKPGRNGGIQLA 436
Cdd:COG1959  26 TSKEIAERQGISPSYLEKILQKLRKAG--LVESVRGPGGGYRLA 67
 
Name Accession Description Interval E-value
PriCT_1 pfam08708
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 260-323 2.43e-18

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 430166  Cd Length: 64  Bit Score: 78.88  E-value: 2.43e-18
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 32140770   260 FSGEKGLIGRNNVMFTLSLAYFSSGYSIETCEYNMFEFNNRLDQPLEEKEVIKIVRSAYSENYQ 323
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGIDRESVLALLHALNSNLEPPLDESEVEKTVKSVYRYVYA 64
PriCT_1 smart00942
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 268-319 4.68e-03

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 214926  Cd Length: 66  Bit Score: 35.77  E-value: 4.68e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....
gi 32140770    268 GRNNVMFTLSLAYFSSGY-SIETCEYNMFEFNNRLDQ-PLEEKEVIKIVRSAYS 319
Cdd:smart00942   9 NRNNTLFRLAGRLLRRGYvDEEEAYALLLAANSANCNpPLPERELEKTAESAYR 62
IscR COG1959
DNA-binding transcriptional regulator, IscR family [Transcription];
393-436 7.34e-03

DNA-binding transcriptional regulator, IscR family [Transcription];


Pssm-ID: 441562  Cd Length: 141  Bit Score: 37.13  E-value: 7.34e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 32140770 393 TKKEIREVLGIPERTLDKLLKVLKANQeiFFKIKPGRNGGIQLA 436
Cdd:COG1959  26 TSKEIAERQGISPSYLEKILQKLRKAG--LVESVRGPGGGYRLA 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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