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Conserved domains on  [gi|320526292|gb|ADW41690|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Primolius couloni]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.40e-142

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 404.98  E-value: 8.40e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   1 MTPLAKLISTSSI********TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 161 SIALGGWTGLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSTKTR 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526292 321 TNALIPTLTSLSTSLLPLTPMMLTAT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.40e-142

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 404.98  E-value: 8.40e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   1 MTPLAKLISTSSI********TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 161 SIALGGWTGLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSTKTR 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526292 321 TNALIPTLTSLSTSLLPLTPMMLTAT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.38e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.93  E-value: 1.38e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   23 SSHWMTAWIGLEINTLSIIPLI-SKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPSCT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   97 ------LLTTAIAIKLGLTPFHFWFPEVLQGSSFT-TALLLSTVMKLPP-----TTILLITSHSLNSTLLTSMSIMSIAL 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  165 GGWTGLNQTQTRKIMAFSSISHIGWMTIII----IHNPELTLLTFYIYTLMTASIFL-----SMNTTNTMSLPTLMASWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 320526292  236 KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 23-298 2.82e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.97  E-value: 2.82e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  23 SSHWMTAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLF--------SGMTN----AWHTGQWDITQL 89
Cdd:COG1007  121 ANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSP 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  90 SYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLNS---TLLTSMSIMSI 162
Cdd:COG1007  201 LLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSM 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 163 ALGGWTGLNQTQTRKIMAFSSISHIGWMTI-IIIHNPE-LTLLTFY--IYTLMTASIF-----LSMNTTNTMSLPTLMAS 233
Cdd:COG1007  281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFavillLSRKGGEAEEIEDLAGL 360

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320526292 234 WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAY 298
Cdd:COG1007  361 ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-297 3.28e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.24  E-value: 3.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   23 SSHWMTAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLF--------------SGMTNAWHTGQWDIT 87
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLFLSNGMLNIS 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   88 QLSYppSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILL-------ITSHSLNSTLLTSMSIM 160
Cdd:TIGR01770 201 LLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  161 SIALGGWTGLNQTQTRKIMAFSSISHIGW-MTIIIIHNPEL---TLLTFYIYTLMTASIFLSM------NTTNTMSLPTL 230
Cdd:TIGR01770 279 SMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLsllrsyKDEWIEYISDF 358

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526292  231 MASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLA 297
Cdd:TIGR01770 359 AGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 8.40e-142

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 404.98  E-value: 8.40e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   1 MTPLAKLISTSSI********TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 161 SIALGGWTGLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSTKTR 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526292 321 TNALIPTLTSLSTSLLPLTPMMLTAT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-325 6.40e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 341.90  E-value: 6.40e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   1 MTPLAKLISTSSI********TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 161 SIALGGWTGLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSTKTR 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*
gi 320526292 321 TNALI 325
Cdd:MTH00070 321 TNNLL 325
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 22-324 6.84e-116

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 339.47  E-value: 6.84e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  22 TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPSCTLLTTA 101
Cdd:MTH00135  22 ASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMSHPLPTTMITLA 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 102 IAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTtILLITSHSLNSTLLTSMSIMSIALGGWTGLNQTQTRKIMAF 181
Cdd:MTH00135 102 LALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPF-ALILQIAPTNPTLLITLGLTSTLVGGWGGLNQTQLRKILAY 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 182 SSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFL 261
Cdd:MTH00135 181 SSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLSLGGLPPLTGFM 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320526292 262 PKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSTKTRTNAL 324
Cdd:MTH00135 261 PKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTL 323
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-325 5.22e-102

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 304.08  E-value: 5.22e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   1 MTPLAKLISTSSI********TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 161 SIALGGWTGLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPSN-KMKQWSTKT 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENT 320


                 ....*.
gi 320526292 320 RTNALI 325
Cdd:MTH00105 321 KPMTLL 326
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-347 2.88e-91

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 276.46  E-value: 2.88e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   1 MTPLAKLISTSSI********TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  81 TGQWDITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 161 SIALGGWTGLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWSTKTR 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*..
gi 320526292 321 TNALIPTLTSLSTSLLPLTPMMLTATK 347
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLFF 347
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-309 8.71e-81

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 249.85  E-value: 8.71e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  11 SSI********TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQLS 90
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  91 YPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSMSIMSIALGGWTGL 170
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 171 NQTQTRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPMLSTTLMLTLLS 250
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 320526292 251 LAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPS 309
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHS 309
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-313 3.77e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 175.40  E-value: 3.77e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   1 MTPLAKLISTSSI********TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  81 tgqwdITQLSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILlitSHSLNSTLLTSMSIM 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 161 SIALGGWTGLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320526292 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPSNKMK 313
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 22-302 2.77e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 157.36  E-value: 2.77e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  22 TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITqlsyppscTLLTTA 101
Cdd:MTH00144  22 SSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFSM--------SLLLLG 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 102 IAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPT-TILLITSHSLNSTLLTSMSIMSIALGGWTGLNQTQTRKIMA 180
Cdd:MTH00144  94 LCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLfLLSNFLDLYWLAYLLCVISVLSALVGSIGGLNQTQVRALLA 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 181 FSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLpTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGF 260
Cdd:MTH00144 174 YSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYKTGLSIISLLLSLGGLPPFLGF 252

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|..
gi 320526292 261 LPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTI 302
Cdd:MTH00144 253 CSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-310 2.83e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 146.85  E-value: 2.83e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   7 LISTSSI********TSSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFsGMTNAWHTgqwdI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLL-GMTMMWSF----P 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  87 TQLSYPPSCTLLTtAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSMSIMSIALGG 166
Cdd:MTH00011  84 SLLKNITALMLLV-SLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 167 WTGLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPMLSTTLML 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320526292 247 TLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYcSTITLPPNPSN 310
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 23-313 9.65e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 145.20  E-value: 9.65e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  23 SSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNawhtgQWDITQLSYppSCTLLTTAI 102
Cdd:MTH00197  17 SSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLS-----FSNLYLSLL--SVVLVILGL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 103 AIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHslNSTLLTSMSIMSIALGGWTGLNQTQTRKIMAFS 182
Cdd:MTH00197  90 LLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGMNQSNIRQLLAYS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 183 SISHIGWMTIIIIHNPELTLLTFYIYTLMTASIFLSMNTTNTMSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLP 262
Cdd:MTH00197 168 SIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPPLSGFFL 247

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 320526292 263 KWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAYCSTITLPPNPSNKMK 313
Cdd:MTH00197 248 KWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 23-296 4.92e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 109.35  E-value: 4.92e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  23 SSHWMTAWIGLEINTLSIIPLI-SKSHHPRAIEATTKYFLVQAAASALLLFS-----GMTNAWH--------TGQWDITQ 88
Cdd:MTH00196  12 SSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcGTTGGLHlsyinlvlNSGQSFSS 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  89 LSYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLitSHSLNSTLLTSMSIMSIALGGWT 168
Cdd:MTH00196  92 VSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLFSLFVGAIG 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 169 GLNQTQTRKIMAFSSISHIGWMTIII----IHNPELTLLTFYIYTLMTASIF---LSMNTTNTMsLPTLMASWTKTPMLS 241
Cdd:MTH00196 170 ALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFSGLSRRLPILA 248

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 320526292 242 TTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRL 296
Cdd:MTH00196 249 ITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.38e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 103.93  E-value: 1.38e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   23 SSHWMTAWIGLEINTLSIIPLI-SKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPSCT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   97 ------LLTTAIAIKLGLTPFHFWFPEVLQGSSFT-TALLLSTVMKLPP-----TTILLITSHSLNSTLLTSMSIMSIAL 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  165 GGWTGLNQTQTRKIMAFSSISHIGWMTIII----IHNPELTLLTFYIYTLMTASIFL-----SMNTTNTMSLPTLMASWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 320526292  236 KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 23-298 2.82e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 105.97  E-value: 2.82e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  23 SSHWMTAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLF--------SGMTN----AWHTGQWDITQL 89
Cdd:COG1007  121 ANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAALAAGGANSP 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  90 SYPPSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSLNS---TLLTSMSIMSI 162
Cdd:COG1007  201 LLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLLLAVLAVLSM 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 163 ALGGWTGLNQTQTRKIMAFSSISHIGWMTI-IIIHNPE-LTLLTFY--IYTLMTASIF-----LSMNTTNTMSLPTLMAS 233
Cdd:COG1007  281 TVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYllAYLFMNLGAFavillLSRKGGEAEEIEDLAGL 360

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320526292 234 WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAY 298
Cdd:COG1007  361 ARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
23-296 6.68e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 96.04  E-value: 6.68e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  23 SSHWMTAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLL--------------FSGMTNAWHTGQWDIT 87
Cdd:PRK05777 122 ANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKALADGSGNSL 201

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  88 QLSYppSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKL----PPTTILLITSHSL---NSTLLTSMSIM 160
Cdd:PRK05777 202 LLLF--GLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLsedWQQVLAIIAIA 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 161 SIALGGWTGLNQTQTRKIMAFSSISHIGWMTI-IIIHNPE-LTLLTFY--IYTLMTASIF--LSMNTTNTMSLPTLmASW 234
Cdd:PRK05777 280 SMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVgLAAGTAEgYSAVLFYllAYLFMTLGAFgvISLLRRKGGEAESI-SDF 358

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320526292 235 T----KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRL 296
Cdd:PRK05777 359 AglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 22-296 1.95e-21

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 94.70  E-value: 1.95e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  22 TSSHWMTAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPSC----T 96
Cdd:MTH00199 115 SSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINSILTGdvgkI 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  97 LLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSmsIMSIALGGWTGLNQTQTR 176
Cdd:MTH00199 195 LITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICA--VLSIIYGAIGALNQTKIK 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 177 KIMAFSSISHIGW----MTIIIIHNPELTLLTFYIYTLMTA---SIFLSMNTTNTMsLPTLMASWTKTPMLSTTLMLTLL 249
Cdd:MTH00199 273 RLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSIcsfSIILSLKLTKGL-IVEVSGLSRKNPVIALTLALTFL 351

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 320526292 250 SLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRL 296
Cdd:MTH00199 352 SIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 23-297 3.28e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.24  E-value: 3.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   23 SSHWMTAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLF--------------SGMTNAWHTGQWDIT 87
Cdd:TIGR01770 121 SNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLFLSNGMLNIS 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   88 QLSYppSCTLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILL-------ITSHSLNSTLLTSMSIM 160
Cdd:TIGR01770 201 LLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQIFLAIIAFL 278

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  161 SIALGGWTGLNQTQTRKIMAFSSISHIGW-MTIIIIHNPEL---TLLTFYIYTLMTASIFLSM------NTTNTMSLPTL 230
Cdd:TIGR01770 279 SMLIGNFGALAQKKVKRLLAYSSISHVGYiLIGLLAGTLEGikaVLFYIFIYALMSLGAFGVLsllrsyKDEWIEYISDF 358

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526292  231 MASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLA 297
Cdd:TIGR01770 359 AGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-282 4.78e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 81.73  E-value: 4.78e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  30 WIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQLS-----YPPS-----CTLLT 99
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAarlaeLDPGlllaaFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 100 TAIAIKLGLTPFHFWFPEVL-QGSSFTTALLLSTVMKLPP-------TTILLITSHSLNSTLLTSMSIMSIALGGWTGLN 171
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVyailrvlTLLFGADPALFLGTLLLVLGLLTMLVGALGALA 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 172 QTQTRKIMAFSSISHIGWMTIII-IHNPE-LTLLTFYI--YTLMTASIFLS----MNTTNTMSLPTLMASWTKTPMLSTT 243
Cdd:COG0651  293 QRDLKRLLAYSSVSQIGYILLGLgLGTPLgLAGALFHLlnHALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAA 372

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 320526292 244 LMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIV 282
Cdd:COG0651  373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 23-281 1.50e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 80.67  E-value: 1.50e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  23 SSHWMTAWIGLEINTLSIIPLISKSHHPRAI---------EATTKYFLVQAAASALLLFSGMTNAWHTGQWDI--TQLSY 91
Cdd:MTH00198 207 SANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNEGMlgTILSA 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  92 PPSCT------------LLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLppTTILLITSHSLNSTLLTSMSI 159
Cdd:MTH00198 287 TLETTnielrqgslgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITSKLLLSVAI 364

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 160 MSIALGGWTGLNQTQTRKIMAFSSISHIGWMTIII-------IHNPELTLLTFYIYTLMTASIFLSMNTTNTMS------ 226
Cdd:MTH00198 365 ISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGTRTptsrqr 444

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526292 227 ------------LPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAI 281
Cdd:MTH00198 445 dgsfgnynlvrrLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSI 511
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 4.98e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 69.65  E-value: 4.98e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  51 RAIEATTKYFLVQAAASALLL--FSGM--TNAWHTGQWDI------TQLSYPPSC----TLLTTAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 117 EVLQGSSFTTALLLSTVMK---LPPTTILLITSHSLNST----LLTSMSIMSIALGGWTGLNQTQTRKIMAFSSISHIGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKvaaSALATRIFDIPFYFSSNewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 190 MTI-IIIHNPE------LTLLTFYIY-TLMT-ASIFLSMNTTNTMSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGF 260
Cdd:CHL00049 319 VIIgIIVGDSNdgyasmITYMLFYIFmNLGTfACIVLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398


                 ...
gi 320526292 261 LPK 263
Cdd:CHL00049 399 FGK 401
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.02e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 62.59  E-value: 1.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  33 LEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFS-GMTNAwHTGQWDITQLS--YPPSCTLLT------TAIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAgaLAENPTVVTafgfvlLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 104 IKLGLTPFHFWFPEVLQG-SSFTTALLLSTVMKLPPTTILLITSH---------SLNSTLLTSMSIMSIALGGWTGLNQT 173
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVYALIRIYFTvfggdfrfaLGLGWLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 174 QTRKIMAFSSISHIGWMTI-IIIHNPE-LTLLTFYI--YTLMTASIFLS----MNTTNTMSLPTLMASWTKTPMLSTTLM 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLgLALLTPLaLAAGLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPLTAAAFA 373

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 320526292 246 LTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIVSLLSLLSLFFYLRLAY 298
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 1.07e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.41  E-value: 1.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  38 LSIIP---LISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQW-----DITQLSYPPS-----CTLLTTAIAI 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 105 KLGLTPFHFWFPEVLQGSSFTTALLLSTVMK-----------LPpttILLITSHSLnSTLLTSMSIMSIALGGWTGLNQT 173
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLkmggygllrfaLP---LFPEASAYF-APLLAALGVIGIIYGALVALAQT 297

                        170
                 ....*....|....*....
gi 320526292 174 QTRKIMAFSSISHIGWMTI 192
Cdd:COG1008  298 DLKRLIAYSSVSHMGFVLL 316
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.38e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 59.29  E-value: 1.38e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  50 PRAIEATTKYFLVQAAASALLLF---------SGMTNAWHTGQWDITQLSYPPSCTLL--TTAIAIKLGLTPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsGGSTQLSAIALALITSPSLGLALALVfvIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 119 LQGSSFTTALLLSTVMKLPPTTI---LLITSHSLNST----LLTSMSIMSIALGGWTGLNQTQTRKIMAFSSISHIGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 192 IIIIHNPE--LTLLTFY--IYTLMT----ASIFLSMNTTNTMSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK02504 317 IGLVAGTEagYASMVFYllAYLFMNlgafACVILFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.38e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 56.26  E-value: 1.38e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  33 LEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLFSgmtNAWHTGQWDITQLSY-------PPSCT------LL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLG---IALLYGQYGTLNMAYlavkmseNPTVVakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  99 TTAIAIKLGLTPFHFWFPEVLQG--SSFTTALLLSTVMKLPPTTILLITSHSLNSTLLTSMSIMSI------ALGGWTGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 171 NQTQTRKIMAFSSISHIGWM------TIIIIHNPELTLL--------TFYI--YTLMTASIFLS----MNTTNTMSLPTL 230
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYgeialaggIYHIvnHALYKALLFLTagavIYETGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 320526292 231 MASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 23-282 3.67e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 55.00  E-value: 3.67e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  23 SSHWMTAWIGLEINTLS---IIPLISKshhpRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQ----LSYPPS- 94
Cdd:PRK08668 117 ANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTSt 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  95 -----CTLLTTAIAI-KLGLTPFHFWFPEV--LQGSSFTTAL----------LLSTVMKLPPTTILLIT-----SHSLNS 151
Cdd:PRK08668 193 gfaliVFLFLLAFGVaKAGIFPLHVWAPDAysEAPQSFSAVLsgqlsklgayGFLLVLYVLPGTKLFSEfgtyrGVPLFN 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 152 TLLTSMSIMSIALGGWTGLNQTQTRKIMAFSSISHIGWMTI-IIIHNP---ELTLLTFYIYTLMTASIFLSMNT----TN 223
Cdd:PRK08668 273 YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVgLGLGTSlgfAGGLFHVFNHALFKGLFFLIFAAviyrTG 352

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 320526292 224 TMSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIV 282
Cdd:PRK08668 353 TTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-280 7.44e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.79  E-value: 7.44e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292   50 PRAIEATTKYFLVQAAASALLLFS----GMTNAWHTGQWDITQLSYPPSCTLLT-----TAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAilglYFLGGGTFDLLELLNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  120 QGSSFTTALLLSTVMKLPPTTILLIT------SHSLNSTLLTSMSIMSIALGGWTGLNQTQTRKIMAFSSISHIGWMTII 193
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNlplfpdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  194 IIHNPELTLLTFYIYT----LMTASIFLSMNT----TNTMSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWL 265
Cdd:TIGR01972 312 IFSFNELGISGAVFQMishgLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391

                         250
                  ....*....|....*
gi 320526292  266 IIQELIKQELTTTAA 280
Cdd:TIGR01972 392 ILLGSFKVNPVVAFL 406
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 30-194 2.07e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.45  E-value: 2.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  30 WIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAA------SALLLFSGMTNAWHTGQWDITQLS-----YPPSCTLL 98
Cdd:PRK08676 128 WIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNWTELAahaslLSPSVLGA 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  99 T-----TAIAIKLGLTPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTILLITS-------HSLNSTLLTSMSIMSIALG 165
Cdd:PRK08676 208 SflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAEQFSNVLIGLGIFSIAVA 287

                        170       180
                 ....*....|....*....|....*....
gi 320526292 166 GWTGLNQTQTRKIMAFSSISHIGWMTIII 194
Cdd:PRK08676 288 AFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-230 1.69e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 49.64  E-value: 1.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  55 ATTKYFLVQAAASALLLFSGMTNAWHTGQ--WDITQL---SYPPSCTLLT-----TAIAIKLGLTPFHFWFPEVLQGSSF 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 125 TTALLLSTVM-KLPPTTI------LLITSHSLNSTLLTSMSIMSIALGGWTGLNQTQTRKIMAFSSISHIGWMTIIIIHN 197
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAF 297

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 320526292 198 PEL----TLLTFYIYTLMTASIFL----SMNTTNTMSLPTL 230
Cdd:PRK12561 298 TDLgisgAMLQMISHGLIAAALFFltgvTYERTHTLSIPNM 338
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 6.62e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.50  E-value: 6.62e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  38 LSIIP---LISKSHHPRAIEATTKYFLVQAAASALLLFS----GMTNAWHTGQWDITQL-SYPPSCTLLT-------TAI 102
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPPGVQYwlflaffIAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 103 AIKLGLTPFHFWFPEVLQGSSFTTALLLSTVM-----------KLPpttILLITSHSLnSTLLTSMSIMSIALGGWTGLN 171
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlkmgaygllrfSLP---LFPDASHEF-APIIITLGVIAIIYGALVALA 297

                        170       180
                 ....*....|....*....|...
gi 320526292 172 QTQTRKIMAFSSISHIGWMTIII 194
Cdd:PRK05846 298 QTDIKKLIAYSSISHMGFVTLGI 320
PRK12650 PRK12650
DUF4040 family protein;
31-263 1.55e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 46.96  E-value: 1.55e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  31 IGLEINTLSIIPLISKSHhPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPS---CTLLTTAIAIKLG 107
Cdd:PRK12650 137 VAWELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVwaeKPGLTTVVAVLIA 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 108 LT--------PFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNST-----LLTSMSIMSIALGGWTGLNQTQ 174
Cdd:PRK12650 216 VAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALMGAVFAVQKTD 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 175 TRKIMAFSSISHIGWMTIIIIHNPELTLLTFYIYT----LMTASIFLSM----NTTNTMSLPTLMASWTKTPMLSTTLML 246
Cdd:PRK12650 296 LKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIgvvdHQAGTRDIRRLGSLWRRMPFTFVSVTI 375

                        250
                 ....*....|....*..
gi 320526292 247 TLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 376 AALSMAAVPPLFGFVSK 392
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 80-282 2.30e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.07  E-value: 2.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  80 HTGQWDITQL-SYPPSCTLLTTAIAI-------KLGLTPFHFWFPEVLQGSSFTTALLLSTVM----------------K 135
Cdd:PRK12644 183 AAGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvarlapgfaD 262

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 136 LPPTTILLITSHSLnsTLLtsmsimsiaLGGWTGLNQTQTRKIMAFSSISHIGWMTIII-IHNPE-----LTLLTfyIYT 209
Cdd:PRK12644 263 VPVWRPTVLVLGLA--TML---------LGGWRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDaalagLAMLL--AHA 329

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526292 210 LMTASIFLSM----NTTNTMSLPTLMASWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIV 282
Cdd:PRK12644 330 LFKAALFLVVgiidHSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPV 406
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
97-268 4.77e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.94  E-value: 4.77e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  97 LLTTAIAIKLGLTPFhFWFPEVLQGSSFTTALLLSTVMK-------LPPTTILLITSHSLNSTLLTSMSIMSIALGGWTG 169
Cdd:PRK12663 212 LFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGALGA 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 170 LNQTQTRKIMAFSSISHIGWMTI-IIIHNPE-LTLLTFY---IYTLMTASIFLS---MNTTNTMSLPTLMASWTKTPMLS 241
Cdd:PRK12663 291 LAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYlvhDMVVKTALFLIAgslVRLTGYRSLQYLGGLYRKEPLFG 370

                        170       180
                 ....*....|....*....|....*..
gi 320526292 242 TTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 371 ALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 23-282 1.96e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.88  E-value: 1.96e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  23 SSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMT---NAWHTGQW-DITQLSYPPSCTLL 98
Cdd:PRK06589 135 SSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFvSGGLFSKNQSIILL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  99 TTAIA--IKLGLTPFHFWFPEVLQGSSFTTALLLSTVM----KLPPTTILLITSHSLNSTLLTSMS-------IMSIALG 165
Cdd:PRK06589 215 LMFIYgiAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQRIFAEFnwlifipIVSIFYS 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 166 GWTGLNQTQTRKIMAFSSISHIGW--MTIIIIHNPELTLLTFYIYT--LMTASIFLSMNT----TNTMSLPTLMASWTKT 237
Cdd:PRK06589 295 SLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSiyslKKEDQVDKLHGTSKSF 374

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 320526292 238 PMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTAAIV 282
Cdd:PRK06589 375 PLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIV 419
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 107-272 7.46e-04

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 41.35  E-value: 7.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 107 GLTPFHFWFPEVLQGSSFTTALLLSTV-MKLPPTTILLITSHSLNSTL-----LTSMSIMSIALGGWTGLNQTQTRKIMA 180
Cdd:PRK08042 195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 181 FSSISHIG--------WMTIIIIHNPELTLLTFY--IYTLMTASIFLSM---------NTTNTMSLPTLMASWTKTPMLS 241
Cdd:PRK08042 275 YHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKLGGIGKKMPVIS 354

                        170       180       190
                 ....*....|....*....|....*....|.
gi 320526292 242 TTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 9.91e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 9.91e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 105 KLGLtpfHFWFPEVLQGSSFTTALLLSTVMkLPPTTILLITSHSLNSTLLTSMSIMSI--ALGGW----TGLNQTQTRKI 178
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATM-VTAGVFLMIRSFPLFEKAPLTLLIITIfgALTAFfaatVGLVQNDLKKV 316

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 179 MAFSSISHIGWMTIII----IHNpeLTLLTFYIYTLMTASIFLSMN------TTNTMSLPTLMASWTKTPMLSTTLMLTL 248
Cdd:MTH00032 317 IAYSTCSQLGYMVLIIgiegSHN--VGLFHLVNHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHSIPFTYTMMLIGS 394

                        170       180
                 ....*....|....*....|
gi 320526292 249 LSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 395 FSIMGLPYLTGFYSKDLILE 414
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.08e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.97  E-value: 1.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  48 HHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPSCT--------LLTTAIAIKLGLT------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELIenikghplFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 114 WFPEVLQGSSFTTALLLSTVMkLPPTTILLITSHSLNS------TLLTSMSIMSIALGGWTGLNQTQTRKIMAFSSISHI 187
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATM-VKAGVYLVARIHPIFSgteawfILVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 188 GWMTII----IIHNPELTLL--TFYIYTLMT--ASIFLSM----NTTNTMSLPTLMASWTKTPMLSTTLMLTLLSLAGLP 255
Cdd:PRK12649 315 AYLMTMygytTYHEPGLGVAaaTFHLLNHATfkACLFLVAgivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 320526292 256 PLTGFLPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 110-266 1.29e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 40.67  E-value: 1.29e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 110 PFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNST-----LLTSMSIMSIALGGWTGLNQTQTRKIMAFSSI 184
Cdd:PRK12647 213 PFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYSTV 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 185 SHIGWMTIIIIHNPELTLLTFYIY----TLMTASIFLSMNT----TNTMSLPTLMASWTKTPMLSTTLMLTLLSLAGLPP 256
Cdd:PRK12647 293 SALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAMPITAAAALLAALSMAGLPP 372

                        170
                 ....*....|
gi 320526292 257 LTGFLPKWLI 266
Cdd:PRK12647 373 LFGFLAKELI 382
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 97-268 2.02e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 39.95  E-value: 2.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  97 LLTTAIAIKLGLTPFHFWFPEvlqgsSFTTALLLST-----------VMKLPPTTILLITSHSLNsTLLTSMSIMSIALG 165
Cdd:PRK12665 214 VLLVAFGIKAAVFPLSFWLPD-----SYPTAPAPVTavfaglltkvgVYAIIRTHTLLFPGGGLD-TLLMVVALLTMVVG 287

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 166 GWTGLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTL--LTFYI--YTLMTASIFLSM----NTTNTMSLPTLMASWTKT 237
Cdd:PRK12665 288 ILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgAIYYVahHITVQTTLFLVVglieRQAGSSSLRRLGGLAKAS 367

                        170       180       190
                 ....*....|....*....|....*....|.
gi 320526292 238 PMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 368 PLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 23-271 2.30e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.55  E-value: 2.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  23 SSHWMTAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQLSYPPS--CTLLTT 100
Cdd:PRK07234 113 CADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATADPeaFALIAL 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 101 AIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLPPTTILLITSHSLNST--LLTSMSIMSIALGGWTGLNQTQTRKI 178
Cdd:PRK07234 193 GLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLdlIVRIFGVGTALLGVLFALLEKDLKRM 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 179 MAFSSISHIGWmtiiIIHNPELTLLTFYIYTLMTASIFL------SMNTTNTMSLPTLMASWtktpmlsTTLMLTLLSLA 252
Cdd:PRK07234 273 LAFSTISQLGF----ILAAPLVGGLYALAHGLVKSTLFLcagalpSRNFTELISQMLGIGKW-------IPLTMASFSIA 341

                        250
                 ....*....|....*....
gi 320526292 253 GLPPLTGFLPKWLIIQELI 271
Cdd:PRK07234 342 GFPLLAGFVSKVLTLKNLL 360
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 3.81e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 38.92  E-value: 3.81e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  55 ATTKYFLVQAAASALLLFSGMTNAWHTG--QWDITQLS---YPPSCTLLT-----TAIAIKLGLTPFHFWFPEVLQGSSF 124
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAakdFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGEATA 245

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526292 125 TTALLLSTVM-KLPPTTIL------LITSHSLNSTLLTSMSIMSIALGGWTGLNQTQTRKIMAFSSISHIGWMTIII 194
Cdd:PRK02546 246 PVHMLLAGILlKMGGYALLrmnagmLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 30-271 3.87e-03

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 38.98  E-value: 3.87e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  30 WIGLEINTLSIIPLISKSHH-PRAIEATTKYFLVQAAASALLLFSGMTNAWHTGQWDITQL-----SYPPSCTLLTTAIA 103
Cdd:COG1009  137 FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPLLTLILLL 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 104 I------KLGLTPFHFWFPEVLQGSSFTTALLLSTVM---------KLPPttILLITSHSLnsTLLTSMSIMSIALGGWT 168
Cdd:COG1009  217 LllgafgKSAQFPLHFWLPDAMEGPTPVSALLHAATMvkagvyllaRLSP--LFALSPVWL--TVVAIIGAITALFAALI 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 169 GLNQTQTRKIMAFSSISHIGWMTIIIihnpELTLLTFYIYTLMT-----ASIFLS----MNTTNTMSLPTLMASWTKTPM 239
Cdd:COG1009  293 ALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLThaffkALLFLGagsvIHATGTRDIRKMGGLRKKMPI 368

                        250       260       270
                 ....*....|....*....|....*....|..
gi 320526292 240 LSTTLMLTLLSLAGLPPLTGFLPKWLIIQELI 271
Cdd:COG1009  369 TAITFLIGALSLAGIPPFAGFFSKEAILEAAL 400
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
38-190 3.96e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.91  E-value: 3.96e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  38 LSIIPL---ISKSHHPRAIEATTKYFLVQAAASALLLFSGMTNAWHTG--QWDITQL---SYPPSCTLLTTA-----IAI 104
Cdd:PRK06473 138 LELIPLyllIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGI 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 105 KLGLTPFHFWFPEV-LQGSSFTTALLLSTVMKLPPTTIL------LITSHSLNSTLLTSMSIMSIALGGWTGLNQTQTRK 177
Cdd:PRK06473 218 KIPLVPFHTWLPDAhVEASTPVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKK 297

                        170
                 ....*....|...
gi 320526292 178 IMAFSSISHIGWM 190
Cdd:PRK06473 298 MVAYSSIGHMGYI 310
ndhD CHL00011
NADH dehydrogenase subunit 4
 55-194 4.25e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 38.77  E-value: 4.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  55 ATTKYFLVQAAASALLLFSGMTNAWHTGQ---WDITQL---SYPPSCTLLT-----TAIAIKLGLTPFHFWFPEVLQGSS 123
Cdd:CHL00011 163 SATKFILYTAGGSIFLLIGVLGMGLYGSNeptLNFETLanqSYPVALEILFyigflIAYAVKLPIIPLHTWLPDTHGEAH 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 124 FTTALLLSTV-------------MKLPPTtillitSHSLNSTLLTSMSIMSIALGGWTGLNQTQTRKIMAFSSISHIGWM 190
Cdd:CHL00011 243 YSTCMLLAGIllkmgayglirinMELLPH------AHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFI 316


                 ....
gi 320526292 191 TIII 194
Cdd:CHL00011 317 IIGI 320
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-219 5.72e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 38.36  E-value: 5.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 101 AIAIKLGLTPFHFWFPEV-LQGSSFTTALLLSTVMKLP-------PTTILLITSHSLNSTLLtSMSIMSIALGGWTGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhVEAPVAGSVLLAGILLKLGgyglvrlSWPILPLGAQNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 320526292 173 TQTRKIMAFSSISHIGWMTIIIIHNpELTLLTFYIYTLMTASIFLSM 219
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTH-DIIGLTGSIFIMLAHGIVSSL 363
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
96-268 7.08e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.15  E-value: 7.08e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  96 TLLTTAIAIKLGLTPFHFWFPEVLQGSSFTTALLLSTVM-KLPPTTI------LLITSHSLNSTLLTSMSIMSIALGGWT 168
Cdd:PRK07363 209 TGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALS 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292 169 GLNQTQTRKIMAFSSISHIGWMTIIIIHNPELTLL----TFYIYTLMTASIF-------LSMNTTNTMSLPTLMASWTKT 237
Cdd:PRK07363 289 AIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLgavaQMISHGLILALLFhlvgiveRKVGTRDLDVLNGLMNPIRGL 368

                        170       180       190
                 ....*....|....*....|....*....|.
gi 320526292 238 PMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07363 369 PLTSALLVLAGMASAGIPGLVGFVAEFIVFQ 399
ND2 MTH00059
NADH dehydrogenase subunit 2; Provisional
 27-137 9.22e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177131  Cd Length: 289  Bit Score: 37.22  E-value: 9.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526292  27 MTAWIGLEINTLSIIPLISKSHHPRAIEATTK--YFLVQAAASALLLFSGmtnawhtgqwditqLSYPPSCTLLTTAIAI 104
Cdd:MTH00059  29 LGFWVFLELCGLSLIPCFFLSSNSNVLNFYSSllSYIVMSGLSSSLLVSG--------------LLFSDLYFFIFFGFVV 94

                         90       100       110
                 ....*....|....*....|....*....|...
gi 320526292 105 KLGLTPFHFWFPEVLQGSSFTTALLLSTVMKLP 137
Cdd:MTH00059  95 KFGLFPFMFWVYRVFSNSSWVVIWLISVVMKFP 127
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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