NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|320526288|gb|ADW41688|]
View 

NADH dehydrogenase subunit 2 (mitochondrion) [Pyrilia vulturina]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.72e-143

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 407.67  E-value: 7.72e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   1 MTSATKLISALSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  81 TGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLLAIMSTT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526288 321 TNPLIPTLTSLSILLLPLSPMILIAI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.72e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 407.67  E-value: 7.72e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   1 MTSATKLISALSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  81 TGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLLAIMSTT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526288 321 TNPLIPTLTSLSILLLPLSPMILIAI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-298 1.02e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 101.35  E-value: 1.02e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  11 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASALLLF--------SSTIN---- 77
Cdd:COG1007  109 LFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagi 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  78 AQHTGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPITLLLMSSHSLNP-- 151
Cdd:COG1007  189 AAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdw 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 152 -TLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKL----TLLAFFIYTLMTTSIFLTM-----NT 221
Cdd:COG1007  269 qLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIlllsrKG 348

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526288 222 TNVLKLSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  349 GEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.00e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 86.98  E-value: 2.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   23 SNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQL-TYPPACA---- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   97 ------LLTIAIAIKLGLTPFHFWFPEVLQGSSLT-TAMLLSTVMKLPPITLLLMSS--HSLNPT---LLAIMSTTSIAL 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  165 GGWMGLNQTQTRKIMAFSSISHLGWMMIII----VYNPKLTLLAFFIYTLMTTSIFL--------TMNTTNVLKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 320526288  233 sWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-297 6.71e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 84.23  E-value: 6.71e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   11 LSILLGTTITTTSNHWAMAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQATASALLLFSSTI------------- 76
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedl 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   77 -NAQHTGQWDITQLTYppACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLL-------MSSHS 148
Cdd:TIGR01770 189 lLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSE 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  149 LNPTLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKL----TLLAFFIYTLMTTSIFLTMNTTNV 224
Cdd:TIGR01770 267 AWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRS 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320526288  225 LK------LSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 347 YKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 7.72e-143

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 407.67  E-value: 7.72e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   1 MTSATKLISALSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  81 TGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLLAIMSTT 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526288 321 TNPLIPTLTSLSILLLPLSPMILIAI 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-326 3.54e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 334.97  E-value: 3.54e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  10 ALSILL-----GTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQW 84
Cdd:MTH00070   5 ALSILLsslalGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  85 DITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLLAIMSTTSIAL 164
Cdd:MTH00070  85 TIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 165 GGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPMLNTTL 244
Cdd:MTH00070 165 GGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMM 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 245 MLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTNPL 324
Cdd:MTH00070 245 MLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNL 324


                 ..
gi 320526288 325 IP 326
Cdd:MTH00070 325 LS 326
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 11-324 4.88e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 334.47  E-value: 4.88e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  11 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQLT 90
Cdd:MTH00135  11 FSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQQMS 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  91 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSlNPTLLAIMSTTSIALGGWMGL 170
Cdd:MTH00135  91 HPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGWGGL 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 171 NQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPMLNTTLMLTLLS 250
Cdd:MTH00135 170 NQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLILLS 249

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320526288 251 LSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQW--STKNPTNPL 324
Cdd:MTH00135 250 LGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWrlPSTQLTLPL 325
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-326 3.16e-101

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 302.15  E-value: 3.16e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   1 MTSATKLISALSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  81 TGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLLAIMSTT 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITL-PPNPSSKMKQWSTKN 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMfPSTNNMKMKWQFENT 320


                 ....*..
gi 320526288 320 PTNPLIP 326
Cdd:MTH00105 321 KPMTLLP 327
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-326 1.11e-83

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 257.20  E-value: 1.11e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   1 MTSATKLISALSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  81 TGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLLAIMSTT 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....*.
gi 320526288 321 TNPLIP 326
Cdd:MTH00200 321 SNLLVG 326
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-326 7.79e-74

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 232.13  E-value: 7.79e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  11 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQLT 90
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  91 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLLAIMSTTSIALGGWMGL 170
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 171 NQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPMLNTTLMLTLLS 250
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320526288 251 LSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNPTNPLIP 326
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-325 5.48e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 164.61  E-value: 5.48e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   1 MTSATKLISALSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQH 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  81 TGQWDITQLTyppacaLLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLlmsSHSLNPTLLAIMSTT 160
Cdd:MTH00160  82 LMLFNNISSM------LINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTKNP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312


                 ....*
gi 320526288 321 TNPLI 325
Cdd:MTH00160 313 LILNF 317
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-318 1.50e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 145.03  E-value: 1.50e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   1 MTSATKLISALSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQH 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  81 TGQWDITqltyppacALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNP-TLLAIMST 159
Cdd:MTH00144  81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISV 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 160 TSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNvLKLSTLMTSWTKAPM 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGD-SGSMKDLGSLKPSYK 231

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320526288 240 LNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMKQWSTK 318
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNS 310
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 1-310 5.05e-40

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 143.77  E-value: 5.05e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   1 MTSATKLISALSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTInaqh 80
Cdd:MTH00011   3 STFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM---- 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  81 tgQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLLAIMSTT 160
Cdd:MTH00011  79 --MWSFPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAM 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 161 SIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPML 240
Cdd:MTH00011 157 SALAGGLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTT 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 241 NTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYcSTITLPPNPSS 310
Cdd:MTH00011 237 SMSLFIMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-313 8.94e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 134.80  E-value: 8.94e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  11 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTgqwditqLT 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL-------YL 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  91 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHslNPTLLAIMSTTSIALGGWMGL 170
Cdd:MTH00197  78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGIGGM 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 171 NQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLMTTSIFLTMNTTNVLKLSTLMTSWTKAPMLNTTLMLTLLS 250
Cdd:MTH00197 156 NQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLS 235

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320526288 251 LSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAYCSTITLPPNPSSKMK 313
Cdd:MTH00197 236 LGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-298 1.02e-23

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 101.35  E-value: 1.02e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  11 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASALLLF--------SSTIN---- 77
Cdd:COG1007  109 LFATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagi 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  78 AQHTGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPITLLLMSSHSLNP-- 151
Cdd:COG1007  189 AAALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdw 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 152 -TLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKL----TLLAFFIYTLMTTSIFLTM-----NT 221
Cdd:COG1007  269 qLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLgvsaALFYLLAYLFMNLGAFAVIlllsrKG 348

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526288 222 TNVLKLSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAY 298
Cdd:COG1007  349 GEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 9.49e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 94.71  E-value: 9.49e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  13 ILLGTTITTTSNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQATASALLLFS-------------STINA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  79 QHTGQWDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLmsSHSLNPTLLAIMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 159 TTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNP----KLTLLAFFIYTLMTTSIFLTMNTTNVLK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320526288 233 SWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 2.00e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 86.98  E-value: 2.00e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   23 SNHWAMAWAGLEINTLSIIPMI-SKSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQL-TYPPACA---- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELsKALTGGLnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   97 ------LLTIAIAIKLGLTPFHFWFPEVLQGSSLT-TAMLLSTVMKLPPITLLLMSS--HSLNPT---LLAIMSTTSIAL 164
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  165 GGWMGLNQTQTRKIMAFSSISHLGWMMIII----VYNPKLTLLAFFIYTLMTTSIFL--------TMNTTNVLKLSTLmt 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsviyrRVHTRNIRDYGGL-- 238

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 320526288  233 sWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQ 268
Cdd:pfam00361 239 -AKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-297 6.71e-18

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 84.23  E-value: 6.71e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   11 LSILLGTTITTTSNHWAMAWAGLEINTLSI-IPMISKSHHPRAIEAATKYFLVQATASALLLFSSTI------------- 76
Cdd:TIGR01770 109 LFALLGIFLLVSSNDLLSIYLGLELQSLCFyVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFGISLiygftgslnfedl 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   77 -NAQHTGQWDITQLTYppACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLL-------MSSHS 148
Cdd:TIGR01770 189 lLFLSNGMLNISLLLL--GIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSE 266

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  149 LNPTLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKL----TLLAFFIYTLMTTSIFLTMNTTNV 224
Cdd:TIGR01770 267 AWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEgikaVLFYIFIYALMSLGAFGVLSLLRS 346

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320526288  225 LK------LSTLMTSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLA 297
Cdd:TIGR01770 347 YKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 1.40e-17

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 83.33  E-value: 1.40e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  14 LLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQL--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  90 -----TYPP----ACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKL----PPITLLLMSSHSLNPT---L 153
Cdd:PRK05777 193 ladgsGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 154 LAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKL----TLLAFFIYTLMTTSIF--LTM------NT 221
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEgysaVLFYLLAYLFMTLGAFgvISLlrrkggEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320526288 222 TNVLKLSTLmtSWTKaPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRL 296
Cdd:PRK05777 353 ESISDFAGL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 11-296 3.10e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 76.21  E-value: 3.10e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  11 LSILLGTTITTTSNHWAMAWAGLEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQL 89
Cdd:MTH00199 104 LIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGI 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  90 TYPPAC----ALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLlaIMSTTSIALG 165
Cdd:MTH00199 184 NSILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVL--ICAVLSIIYG 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 166 GWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNP----KLTLLAFFIYTLMTT---SIFLTMNTTNVLKLSTLMTSwTKAP 238
Cdd:MTH00199 262 AIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSIcsfSIILSLKLTKGLIVEVSGLS-RKNP 340

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320526288 239 MLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRL 296
Cdd:MTH00199 341 VIALTLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-296 1.74e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 70.95  E-value: 1.74e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  30 WAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQL-----TYPP-----ACALLT 99
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLaarlaELDPglllaAFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 100 IAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPI-----TLLLMSSHSLNP---TLLAIMSTTSIALGGWMGLN 171
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVyailrVLTLLFGADPALflgTLLLVLGLLTMLVGALGALA 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 172 QTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIY----TLMTTSIFLT----MNTTNVLKLSTLMTSWTKAPMLNTT 243
Cdd:COG0651  293 QRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAA 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 320526288 244 LMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRL 296
Cdd:COG0651  373 FLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 4.48e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 66.64  E-value: 4.48e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  38 LSIIPM---ISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQW-----DITQLTYPPA-----CALLTIAIAI 104
Cdd:COG1008  142 LMLIPMyflIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 105 KLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLP-------PITLLLMSSHSLNPtLLAIMSTTSIALGGWMGLNQTQTR 176
Cdd:COG1008  222 KVPMFPFHTWLPDAHVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLK 300

                        170
                 ....*....|....*.
gi 320526288 177 KIMAFSSISHLGWMMI 192
Cdd:COG1008  301 RLIAYSSVSHMGFVLL 316
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-220 2.92e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 64.25  E-value: 2.92e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  51 RAIEAATKYFLVQATASALLL--FSST--INAQHTGQWDI------TQLTYPPAC----ALLTIAIAIKLGLTPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 117 EVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPT-------LLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAASALATRIFDIPFYFssnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318

                        170       180       190
                 ....*....|....*....|....*....|..
gi 320526288 190 MMI-IIVYNPKLTLLAFFIYTLmttsIFLTMN 220
Cdd:CHL00049 319 VIIgIIVGDSNDGYASMITYML----FYIFMN 346
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-192 1.98e-10

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 61.80  E-value: 1.98e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  15 LGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAI---------EAATKYFLVQATASALLLFSSTINAQHTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  84 ------------WDITQLTYPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLppITLLLMSSHSLNP 151
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 320526288 152 TLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMI 192
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.80e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 55.66  E-value: 1.80e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  33 LEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQLT--YPPACALLT------IAIAI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAgaLAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 105 KLGLTPFHFWFPEVLQG-SSLTTAMLLSTVMKLPP----------ITLLLMSSHSLNPTLLAIMSTtSIALGGWMGLNQT 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriyftvFGGDFRFALGLGWLLAVLALL-SMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 174 QTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYT-----------LMTTSIFLTMNTTNVLKLSTLMTswtKAPMLNT 242
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLGR---RMPLTAA 370

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 320526288 243 TLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAY 298
Cdd:PRK08375 371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 6.70e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.79  E-value: 6.70e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288   50 PRAIEAATKYFLVQATASALLLFSSTINA-QHTGQWDIT---QLTYPPACALLT-----IAIAIKLGLTPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYfLGGGTFDLLellNLPLPFGVQTWLflaffIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  120 QGSSLTTAMLLSTVMKLPPITLLLMS-------SHSLNPtLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNlplfpdaSLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 320526288  193 II 194
Cdd:TIGR01972 311 GI 312
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 7.92e-08

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 53.67  E-value: 7.92e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  38 LSIIPM---ISKSHHPRAIEAATKYFLVQATASALLLFS----STINAQHTGQWDITQL---TYPPACALLT-----IAI 102
Cdd:PRK05846 142 AMLIPMyflIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlnlPLPPGVQYWLflaffIAF 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 103 AIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPPITLLLMS-------SHSLNPtLLAIMSTTSIALGGWMGLNQTQ 174
Cdd:PRK05846 222 AVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlKMGAYGLLRFSlplfpdaSHEFAP-IIITLGVIAIIYGALVALAQTD 300

                        170       180
                 ....*....|....*....|
gi 320526288 175 TRKIMAFSSISHLGWMMIII 194
Cdd:PRK05846 301 IKKLIAYSSISHMGFVTLGI 320
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 9.56e-08

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 53.50  E-value: 9.56e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  55 AATKYFLVQATASALLLFSSTINAQHTGQ--WDITQLT---YPPACALLT-----IAIAIKLGLTPFHFWFPEVLQGSSL 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGaksYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526288 125 TTAMLLSTVM-KLPPITL------LLMSSHSLNPTLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIII 194
Cdd:PRK12561 218 PVSMILAGVLlKMGGYALirfnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-210 9.82e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.14  E-value: 9.82e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  13 ILLGTTITTTSNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATA------SALLLFSSTINAQHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  87 TQLT-----YPPACALLT-----IAIAIKLGLTPFHFWFPEV-LQGSSLTTAMLLSTVMKLPPITLLLMSS-------HS 148
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 320526288 149 LNPTLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTL 210
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-192 6.57e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.84  E-value: 6.57e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  48 HHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQL-----------TYPPACALLTIAIAIKLGLTPFHFWFP 116
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaptilsspLLTLILLLLLLGAFGKSAQFPLHFWLP 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 117 EVLQGSSLTTAMLLSTVM---------KLPPItlLLMSSHSLnpTLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHL 187
Cdd:COG1009  236 DAMEGPTPVSALLHAATMvkagvyllaRLSPL--FALSPVWL--TVVAIIGAITALFAALIALAQTDIKRVLAYSTVSQL 311


                 ....*
gi 320526288 188 GWMMI 192
Cdd:COG1009  312 GYMFL 316
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 23-211 9.74e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.23  E-value: 9.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  23 SNHWAMAWAGLEINTLSIIPMISKSHHPRAIEAATKYFLVQATASALLLFSS--------------------TINAQHTG 82
Cdd:PRK06458 127 SNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvmgdgemailwTELLKHAS 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  83 QWDITQLTYppACALLTIAIAIKLGLTPFHFWFPEV-LQGSSLTTAML--------LSTVMKLPPITLLLMSSHSLNPtL 153
Cdd:PRK06458 207 LLDPTLMKL--AFVFLLIGFGTKVGLFPMHAWLPDAhSEAPSPVSALLsgvllnvaLYAVLRYYILIDAAIGSDFPGR-L 283

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 320526288 154 LAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTLM 211
Cdd:PRK06458 284 LLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLN 341
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.60e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 46.63  E-value: 1.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  33 LEINTLSIIPMIS-KSHHPRAIEAATKYFLVQATASALLLFSSTInaqHTGQWDITQLTYPP-------------ACALL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIAL---LYGQYGTLNMAYLAvkmsenptvvakiALALF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  99 TIAIAIKLGLTPFHFWFPEVLQG--SSLTTAMLLSTVMKLPPITLLLMS--SHSLNPT----LLAIMSTTSIALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 171 NQTQTRKIMAFSSISHLGWMMI-----IIVY-NPKLTLLAF----------FIYTLMTTSIFLT-------MNTTNVLKL 227
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMASYGEialaggiyhiVNHALYKALLFLTagaviyeTGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 320526288 228 STLMTswtKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLI 266
Cdd:PRK08376 387 GGLAR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 1.73e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.53  E-value: 1.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  34 EINTLS---IIPMISKshhpRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDI----------TQLTYPPACALLTI 100
Cdd:PRK08668 128 EIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFadisqglindTSTGFALIVFLFLL 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 101 AIAI-KLGLTPFHFWFPE-----------VLQGS-SLTTAMLLSTVMKLPPITLLL-----MSSHSLNPTLLAIMSTTSI 162
Cdd:PRK08668 204 AFGVaKAGIFPLHVWAPDayseapqsfsaVLSGQlSKLGAYGFLLVLYVLPGTKLFsefgtYRGVPLFNYILAWLGNISI 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 163 ALGGWMGLNQTQTRKIMAFSSISHLGWMMIIIVYnpkLTLLAF-------FIYTLMTTSIFLTMNT----TNVLKLSTLM 231
Cdd:PRK08668 284 IVGTLMAILQEDIKKLIAYSSVANGGYILVGLGL---GTSLGFagglfhvFNHALFKGLFFLIFAAviyrTGTTKISEMG 360

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320526288 232 TSWTKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLIMQELIKQEMATTTTIISMLSLLGLFFYLRLAY 298
Cdd:PRK08668 361 GLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 3.03e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 45.98  E-value: 3.03e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  48 HHPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQLTYPPAC--------------ALLTIAIAIKLGLTPFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitlILIFIGAAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 114 WFPEVLQGSSLTTAMLLSTVMKLPPITLL--LMSSHSLNPTLLAIMSTTSIA---LGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVarIHPIFSGTEAWFILVSGTGMItmvLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*...
gi 320526288 189 WMMIIIVY 196
Cdd:PRK12649 316 YLMTMYGY 323
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 8.92e-05

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 44.27  E-value: 8.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  50 PRAIEAATKYFLVQATASALLLFSSTI---------NAQHTGQWDITQLTYPPACALLTIA--IAIKLGLTPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSLlyglsggstQLSAIALALITSPSLGLALALVFVIagIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 119 LQGSSLTTAMLLSTVMKLPPITL---LLMSSHS-------LNPTLLAIMSTTsiaLGGWMGLNQTQTRKIMAFSSISHLG 188
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPsfdeqwkLLFTALAILSMV---LGNVVALAQTSMKRMLAYSSIGQAG 313

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 189 WMMIIIVYNPKLTLLAFFIYTLmttsIFLTMN------------TTNVLKLSTLMTSWTKAPMLNTTLMLTLLSLSGLPP 256
Cdd:PRK02504 314 FVMIGLVAGTEAGYASMVFYLL----AYLFMNlgafacvilfslRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPP 389


                 ....*..
gi 320526288 257 LTGFLPK 263
Cdd:PRK02504 390 LAGFFGK 396
ndhD CHL00011
NADH dehydrogenase subunit 4
 100-194 1.62e-04

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 43.40  E-value: 1.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 100 IAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM------KLPPITL-LLMSSHSLNPTLLAIMSTTSIALGGWMGLNQ 172
Cdd:CHL00011 219 IAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILlkmgayGLIRINMeLLPHAHSIFSPWLVIVGAIQIIYAASTSLGQ 298

                         90       100
                 ....*....|....*....|..
gi 320526288 173 TQTRKIMAFSSISHLGWMMIII 194
Cdd:CHL00011 299 RNLKKRIAYSSVSHMGFIIIGI 320
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
96-204 3.95e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.99  E-value: 3.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  96 ALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPP-------ITLLLMSSHSLNPTLlAIMSTTSIALGGW 167
Cdd:PRK06473 209 APILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLlKLGTygllrfgVGLFPEAWVYLAPWL-ATWAVVSVLYGAS 287

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 320526288 168 MGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLA 204
Cdd:PRK06473 288 CAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
96-203 5.67e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 5.67e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  96 ALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVM-KLPPITL------LLMSSHSLNPTLLAIMSTTSIALGGWM 168
Cdd:PRK07363 209 TGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLaKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALS 288

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 320526288 169 GLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLL 203
Cdd:PRK07363 289 AIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
PRK12650 PRK12650
DUF4040 family protein;
29-210 6.76e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.57  E-value: 6.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  29 AWaglEINTLSIIPMISKSHhPRAIEAATKYFLVQATASALLLFSSTINAQHTGQWDITQLTYPPACA---LLTIAIAIK 105
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVL 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 106 LGLT--------PFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSL--NPT---LLAIMSTTSIALGGWMGLNQ 172
Cdd:PRK12650 214 IAVAaftksaqfPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320526288 173 TQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIYTL 210
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTL 331
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-194 1.20e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 40.46  E-value: 1.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  55 AATKYFLVQATASALLL--------FSSTINAQHTgqwDITQLTYPPACALLT-----IAIAIKLGLTPFHFWFPEVLQG 121
Cdd:PRK02546 166 AATKFILYTAGSSLFILlaalamafYGDTPTFDMT---ALAAKDFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHGE 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 122 SSLTTAMLLSTVM-KLPPITLLLMS------SHSLNPTLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIII 194
Cdd:PRK02546 243 ATAPVHMLLAGILlKMGGYALLRMNagmlpdAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGI 322
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 100-195 2.50e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.52  E-value: 2.50e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 100 IAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTV-MKLPPITLLLMS-------SHSLNPTLLAiMSTTSIALGGWMGLN 171
Cdd:MTH00226 238 LAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSwpilplgAQNLAPAVIA-MGIVGIVYGSFATCR 316

                         90       100
                 ....*....|....*....|....
gi 320526288 172 QTQTRKIMAFSSISHLGWMMIIIV 195
Cdd:MTH00226 317 QIDVKRLVAYSSVAHMGLVSITLV 340
PRK12646 PRK12646
DUF4040 family protein;
91-194 5.79e-03

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 38.58  E-value: 5.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  91 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPTLLAIMSTTSIAL-----G 165
Cdd:PRK12646 209 FIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYIVTFVGLitmlfG 288

                         90       100
                 ....*....|....*....|....*....
gi 320526288 166 GWMGLNQTQTRKIMAFSSISHLGWMMIII 194
Cdd:PRK12646 289 SITALKQWDLKGILAYSTISQLGMIMAMV 317
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-266 6.68e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 38.36  E-value: 6.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  91 YPPACALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAMLLSTVMKLPPITLLLMSSHSLNPT-----LLAIMSTTSIALG 165
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTG 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288 166 GWMGLNQTQTRKIMAFSSISHLGWMMIIIVYNPKLTLLAFFIY----TLMTTSIFLT-------MNTTNVLKLSTLmtsW 234
Cdd:PRK12647 274 ALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVagiidheTGTRDITKLGGL---R 350

                        170       180       190
                 ....*....|....*....|....*....|..
gi 320526288 235 TKAPMLNTTLMLTLLSLSGLPPLTGFLPKWLI 266
Cdd:PRK12647 351 RAMPITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-194 8.83e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 37.79  E-value: 8.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526288  55 AATKYFLVQATASALLLFSSTINAQHTGQWDITQLTYPPAC-----ALLTIAIAIKLGLTPFHFWFPEVLQGSSLTTAML 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGIlslvfLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320526288 130 LSTVM-KLPPITLLLMSSHSLNP-----TLLAIMSTTSIALGGWMGLNQTQTRKIMAFSSISHLGWMMIII 194
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGI 313
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH