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Conserved domains on  [gi|320526272|gb|ADW41680|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Aratinga solstitialis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.86e-146

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 416.53  E-value: 2.86e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   1 MTPLAKLISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526272 321 TNILIPTFASLSISLLPLSPMMLTNT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.86e-146

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 416.53  E-value: 2.86e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   1 MTPLAKLISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526272 321 TNILIPTFASLSISLLPLSPMMLTNT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 4.04e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.98  E-value: 4.04e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  14 LLGTTITITSSHWMAAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLF--------SGTTN----AWY 80
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKL----PLITILLITSHSLNS---TL 153
Cdd:COG1007  192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 154 LTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTM--LTFY--IYTLMTVSIFLTMDTTNTMNLPT 229
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSRKGGEA 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320526272 230 LMTS-----WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAY 298
Cdd:COG1007  352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.13e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.47  E-value: 4.13e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   23 SSHWMAAWIGLEINTLSIIPLI-SKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSYPPSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   96 -----LLLTTAIAIKLGLVPFHFWFPEVLQGTSF-ITALLLSTVMKLP---LITILLITSHSLN--STLLTSMSIMSIAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGgygLIRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  165 GGWMGLNQTQTRKILAFSSISHIGWMTIII----IYNPKLTMLTFYIYTLMTVSIFL-----TMDTTNTMNLPTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 320526272  236 KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 6.29e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.17  E-value: 6.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   13 ILLGTTITITSSHWMAAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLF--------SGTTN----AW 79
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNfedlLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   80 YTGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILL-------ITSHSLNST 152
Cdd:TIGR01770 191 FLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  153 LLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTM--LTFY--IYTLMTVSIFLTMDTTNTMNLP 228
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320526272  229 -----TLMTSWTKT-PMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 351 wieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 2.86e-146

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 416.53  E-value: 2.86e-146
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   1 MTPLAKLISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPML 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 320526272 321 TNILIPTFASLSISLLPLSPMMLTNT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-324 1.10e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 349.10  E-value: 1.10e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   1 MTPLAKLISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKL-PLITILLITSHslNSTLLTSMSI 159
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLaPFALILQIAPT--NPTLLITLGL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 160 MSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPM 239
Cdd:MTH00135 159 TSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPA 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 240 LSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKS 319
Cdd:MTH00135 239 LTALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPS 318


                 ....*
gi 320526272 320 PTNIL 324
Cdd:MTH00135 319 TQLTL 323
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-328 2.92e-119

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 348.06  E-value: 2.92e-119
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   1 MTPLAKLISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPML 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320


                 ....*...
gi 320526272 321 TNILIPTF 328
Cdd:MTH00070 321 TNNLLSLT 328
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-344 2.15e-103

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 307.54  E-value: 2.15e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   1 MTPLAKLISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPML 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSN-KMKQWATKS 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPSTNNmKMKWQFENT 320

                        330       340
                 ....*....|....*....|....*
gi 320526272 320 PTNILIPTFASLSISLLPLSPMMLT 344
Cdd:MTH00105 321 KPMTLLPTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-328 4.45e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 281.09  E-value: 4.45e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   1 MTPLAKLISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPML 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320


                 ....*...
gi 320526272 321 TNILIPTF 328
Cdd:MTH00200 321 SNLLVGLL 328
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 11-326 1.31e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 249.46  E-value: 1.31e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  11 SSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLS 90
Cdd:MTH00041  11 TSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSINGPL 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  91 YPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNSTLLTSMSIMSIALGGWMGL 170
Cdd:MTH00041  91 NTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGGWGGL 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 171 NQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLS 250
Cdd:MTH00041 171 NQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILS 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320526272 251 LAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSPTNILIP 326
Cdd:MTH00041 251 LGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-328 5.80e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 177.71  E-value: 5.80e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   1 MTPLAKLISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 tgqwdITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKlplITILLITSHSLNSTLLTSMSIM 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQK---IAPLILLSYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 161 SIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPML 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKSP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFS 312


                 ....*...
gi 320526272 321 TNILIPTF 328
Cdd:MTH00160 313 LILNFLSF 320
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-319 3.30e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 162.36  E-value: 3.30e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   1 MTPLAKLISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWY 80
Cdd:MTH00144   1 MSSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITqlsyppscLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKL-PLITILLITSHSLNSTLLTSMSI 159
Cdd:MTH00144  81 SFSWFSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVaPLFLLSNFLDLYWLAYLLCVISV 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 160 MSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLpTLMTSWTKTPM 239
Cdd:MTH00144 153 LSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSM-KDLGSLKPSYK 231

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 240 LSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMKQWATKS 319
Cdd:MTH00144 232 TGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSS 311
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-329 5.04e-44

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 154.17  E-value: 5.04e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   7 LISASSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTnawytgQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  87 TQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNSTLLTSMSIMSIALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 167 WMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLML 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 247 TLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYcSTITLPPNPSNkMKQWATKSPTNILIP 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-LKSAPYEPKTKILIS 320


                 ...
gi 320526272 327 TFA 329
Cdd:MTH00011 321 MCT 323
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 11-313 1.01e-41

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 147.90  E-value: 1.01e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  11 SSILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGttnaWYTGQWDITQLS 90
Cdd:MTH00197   5 FIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGG----SLSFSNLYLSLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  91 yppSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKL-PLITILLITSHSLnstLLTSMSIMSIALGGWMG 169
Cdd:MTH00197  81 ---SVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLaPLLILAFNSSSFM---GLLICSVLSSLIGGIGG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 170 LNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLL 249
Cdd:MTH00197 155 MNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFL 234

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320526272 250 SLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNKMK 313
Cdd:MTH00197 235 SLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMK 298
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-298 4.04e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 110.98  E-value: 4.04e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  14 LLGTTITITSSHWMAAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLF--------SGTTN----AWY 80
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTGSLNlagiAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKL----PLITILLITSHSLNS---TL 153
Cdd:COG1007  192 LAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqLL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 154 LTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTM--LTFY--IYTLMTVSIFLTMDTTNTMNLPT 229
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYllAYLFMNLGAFAVILLLSRKGGEA 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320526272 230 LMTS-----WTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAY 298
Cdd:COG1007  352 EEIEdlaglARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-296 4.64e-27

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 109.35  E-value: 4.64e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  13 ILLGTTITITSSHWMAAWIGLEINTLSIIPLI-SKSHHPRAIEATTKYFLVQAAASALLLFS-----GTT--------NA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcGTTgglhlsyiNL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  79 WYTGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLitSHSLNSTLLTSMS 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 159 IMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII----IYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMN--LPTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320526272 233 SWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 4.13e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.47  E-value: 4.13e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   23 SSHWMAAWIGLEINTLSIIPLI-SKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSYPPSC------ 95
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   96 -----LLLTTAIAIKLGLVPFHFWFPEVLQGTSF-ITALLLSTVMKLP---LITILLITSHSLN--STLLTSMSIMSIAL 164
Cdd:pfam00361  81 llllfLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGgygLIRRSLLYLPSSPfiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  165 GGWMGLNQTQTRKILAFSSISHIGWMTIII----IYNPKLTMLTFYIYTLMTVSIFL-----TMDTTNTMNLPTLMTSWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 320526272  236 KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 4.46e-23

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 99.51  E-value: 4.46e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  14 LLGTTITITSSHWMAAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLF--------SGTTNAWYTGQW 84
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  85 DITQLSYPP----SCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKL----PLITILLITSHSL---NSTL 153
Cdd:PRK05777 193 LADGSGNSLlllfGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLsedWQQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 154 LTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTM--LTFY--IYTLMTVSIF--LTMDTTNTMNL 227
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYllAYLFMTLGAFgvISLLRRKGGEA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320526272 228 PTLmTSWT----KTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRL 296
Cdd:PRK05777 353 ESI-SDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 13-297 6.29e-22

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 96.17  E-value: 6.29e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   13 ILLGTTITITSSHWMAAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLF--------SGTTN----AW 79
Cdd:TIGR01770 111 ALLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygfTGSLNfedlLL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   80 YTGQWDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILL-------ITSHSLNST 152
Cdd:TIGR01770 191 FLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLrlflyilFGFSEAWQI 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  153 LLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTM--LTFY--IYTLMTVSIFLTMDTTNTMNLP 228
Cdd:TIGR01770 271 FLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYifIYALMSLGAFGVLSLLRSYKDE 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320526272  229 -----TLMTSWTKT-PMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 351 wieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-267 6.94e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 95.85  E-value: 6.94e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  13 ILLGTTITITSSHWMAAWIGLEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSY 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  92 PPSC----LLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNSTLLTsmSIMSIALGGW 167
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 168 MGLNQTQTRKILAFSSISHIGW----MTIIIIYNPKLTMLTFYIYTLMTVSIFLTMDTTN-TMNLPTLMTSWT-KTPMLS 241
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKlTKGLIVEVSGLSrKNPVIA 343

                        250       260
                 ....*....|....*....|....*.
gi 320526272 242 TTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-271 1.47e-18

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 85.97  E-value: 1.47e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  30 WIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLS-----YPPS-----CLLLT 99
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAarlaeLDPGlllaaFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 100 TAIAIKLGLVPFHFWFPEVL-QGTSFITALLLSTVMKLPLITILLI-------TSHSLNSTLLTSMSIMSIALGGWMGLN 171
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDAYpAAPSPVSALLSGLLTKVGVYAILRVltllfgaDPALFLGTLLLVLGLLTMLVGALGALA 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 172 QTQTRKILAFSSISHIGWMTIII-IYNPK-LTMLTFYI--YTLMTVSIFLT----MDTTNTMNLPTLMTSWTKTPMLSTT 243
Cdd:COG0651  293 QRDLKRLLAYSSVSQIGYILLGLgLGTPLgLAGALFHLlnHALAKALLFLAagaiERATGTRDLDKLGGLGKRMPLTAAA 372

                        250       260
                 ....*....|....*....|....*...
gi 320526272 244 LMLTLLSLAGLPPLTGFLPKWLIIQELI 271
Cdd:COG0651  373 FLIGALALAGLPPLSGFVSKWLLLQAAL 400
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-272 5.46e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.83  E-value: 5.46e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  15 LGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAI---------EATTKYFLVQAAASALLLFSGTTNAWYTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  84 ------------WDITQLSYPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLplITILLITSHSLNS 151
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 152 TLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII-------IYNPKLTMLTFYIYTLMTVSIFLTMDTTNT 224
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGT 436

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320526272 225 M------------------NLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:MTH00198 437 RtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIK 502
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 8.28e-14

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 71.96  E-value: 8.28e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  51 RAIEATTKYFLVQAAASALLL--FSgttnaWYTGQ-------WDI------TQLSYPPSCLL----LTTAIAIKLGLVPF 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 112 HFWFPEVLQG-----------TSFITALLLSTVMklplITILLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKILA 180
Cdd:CHL00049 234 HQWTPDVYEGsptpvvaflsvTSKVAASALATRI----FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLA 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 181 FSSISHIGWMTIIII----YNPKLTMLTF-YIYTLMTVSIF----LTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSL 251
Cdd:CHL00049 310 YSSIGQIGYVIIGIIvgdsNDGYASMITYmLFYIFMNLGTFacivLFGLRTGTDNIRDYAGLYTKDPFLALSLALCLLSL 389

                        250
                 ....*....|..
gi 320526272 252 AGLPPLTGFLPK 263
Cdd:CHL00049 390 GGIPPLAGFFGK 401
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-329 1.18e-11

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 65.29  E-value: 1.18e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  33 LEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFS--------GTTN-AWYTGqwditqlSYPPSCLLLT---- 99
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvgllygvtGTLNmADLAG-------ALAENPTVVTafgf 207

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 100 --TAIAIKLGLVPFHFWFPEVLQGTS-FITALLLSTVMKLPLITILLITSH---------SLNSTLLTSMSIMSIALGGW 167
Cdd:PRK08375 208 vlLALALKAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVYALIRIYFTvfggdfrfaLGLGWLLAVLALLSMLVGSL 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 168 MGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTML--TFYI--YTLMTVSIFLT----MDTTNTMNLPTLMTSWTKTPM 239
Cdd:PRK08375 288 AALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAagaiEVTYGTRRLSELSGLGRRMPL 367

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 240 LSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAISLLSLLSLFFYLRLAYCSTITLPPNPSNkmkQWATKS 319
Cdd:PRK08375 368 TAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPPGSE---APKQEA 444

                        330
                 ....*....|
gi 320526272 320 PTNILIPTFA 329
Cdd:PRK08375 445 PLGMLAPSLA 454
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-192 1.55e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 65.10  E-value: 1.55e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  38 LSIIP---LISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQW-----DITQLSYPPS-----CLLLTTAIAI 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfdiaELAAAPLPLTaqlllFLAFFIAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 105 KLGLVPFHFWFPEVL-QGTSFITALLLSTVMKLPL-------ITILLITSHSLnSTLLTSMSIMSIALGGWMGLNQTQTR 176
Cdd:COG1008  222 KVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKMGGygllrfaLPLFPEASAYF-APLLAALGVIGIIYGALVALAQTDLK 300

                        170
                 ....*....|....*.
gi 320526272 177 KILAFSSISHIGWMTI 192
Cdd:COG1008  301 RLIAYSSVSHMGFVLL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.17e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 59.34  E-value: 1.17e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  33 LEINTLSIIPLIS-KSHHPRAIEATTKYFLVQAAASALLLFS--------GTTNAWYTGqwdiTQLSYPPSCL------L 97
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqyGTLNMAYLA----VKMSENPTVVakialaL 225

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  98 LTTAIAIKLGLVPFHFWFPEVL-QGTSFITALLL-STVMKLPLITILLITSHSLNSTLLTSMSIMSI------ALGGWMG 169
Cdd:PRK08376 226 FIAGLAMKSGAVPVHMWLPDAYpAAPSSISAMLLvIKQAGLYALARVLFSIYGPAINLATVGWVIIIlgcltmFVGVAMA 305

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 170 LNQTQTRKILAFSSISHIGWM------TIIIIYNPKLTML--------TFYI--YTLMTVSIFLT----MDTTNTMNLPT 229
Cdd:PRK08376 306 VVQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYgeialaggIYHIvnHALYKALLFLTagavIYETGTRNLNE 385

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 320526272 230 LMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 386 LGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.30e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 59.29  E-value: 1.30e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  50 PRAIEATTKYFLVQAAASALLLF---------SGTTNAWYTGQWDITQLSYPP--SCLLLTTAIAIKLGLVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgssllyglsGGSTQLSAIALALITSPSLGLalALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 119 LQGTSFITALLLSTVMK---LPLITILLITSHSLNST----LLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 192 IIIIYNPK--LTMLTFY--IYTLMTVSIF----LTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK02504 317 IGLVAGTEagYASMVFYllAYLFMNLGAFacviLFSLRTGTDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 1.75e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 58.61  E-value: 1.75e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  13 ILLGTTITITSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAA------SALLLFSGTTNAWYTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  87 TQLS-----YPPSCLLLT-----TAIAIKLGLVPFHFWFPEV-LQGTSFITALLLSTVMKLPLITILLITS-------HS 148
Cdd:PRK08676 191 TELAahaslLSPSVLGASflfifIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 320526272 149 LNSTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 194
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 1.59e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.63  E-value: 1.59e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272   50 PRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQW----DITQLSYPPSC-----LLLTTAIAIKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  120 QGTSFITALLLSTVMKLPLITILLIT------SHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTI- 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNlplfpdASLYFAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLg 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  193 IIIYNPK------LTMLTFYIYT-LMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWL 265
Cdd:TIGR01972 312 IFSFNELgisgavFQMISHGLITaALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391


                  ...
gi 320526272  266 IIQ 268
Cdd:TIGR01972 392 ILL 394
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 23-282 2.83e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.92  E-value: 2.83e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  23 SSHWMAAWIGLEINTLS---IIPLISKshhpRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQ----LSYPPS- 94
Cdd:PRK08668 117 ANDLLTLYIFWEIMTFSsfmMVPMGKK----ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADisqgLINDTSt 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  95 ------CLLLTTAIAIKLGLVPFHFWFPE-----------VLQGT-----SFITALLLSTVMKLPL-ITILLITSHSLNS 151
Cdd:PRK08668 193 gfalivFLFLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQlsklgAYGFLLVLYVLPGTKLfSEFGTYRGVPLFN 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 152 TLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGW--MTIIIIYNPKLTMLTFYIYT--LMTVSIFLTMDT----TN 223
Cdd:PRK08668 273 YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYilVGLGLGTSLGFAGGLFHVFNhaLFKGLFFLIFAAviyrTG 352

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 320526272 224 TMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTSTAI 282
Cdd:PRK08668 353 TTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 38-194 4.49e-07

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 51.36  E-value: 4.49e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  38 LSIIP---LISKSHHPRAIEATTKYFLVQAAASALLLFS----GTTNAWYTGQWDITQL---SYPPS-------CLLLtt 100
Cdd:PRK05846 142 AMLIPmyfLIGVWGGKNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlnlPLPPGvqywlflAFFI-- 219

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 101 AIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVM-KLP---LITILL----ITSHSLnSTLLTSMSIMSIALGGWMGLNQ 172
Cdd:PRK05846 220 AFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILlKMGaygLLRFSLplfpDASHEF-APIIITLGVIAIIYGALVALAQ 298

                        170       180
                 ....*....|....*....|..
gi 320526272 173 TQTRKILAFSSISHIGWMTIII 194
Cdd:PRK05846 299 TDIKKLIAYSSISHMGFVTLGI 320
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-230 1.49e-06

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 49.64  E-value: 1.49e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  55 ATTKYFLVQAAASALLLFSGTTNAWYTGQ--WDITQL---SYPPSCLLLT-----TAIAIKLGLVPFHFWFPEVLQGTSF 124
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELgakSYPLALELLLyagflIAFGVKLPIFPLHTWLPDAHGEASA 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 125 ITALLLSTVM-KL---PLITI---LLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII--- 194
Cdd:PRK12561 218 PVSMILAGVLlKMggyALIRFnvqMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIaaf 297

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 320526272 195 ----IYNPKLTMLTfyiYTLMTVSIFL----TMDTTNTMNLPTL 230
Cdd:PRK12561 298 tdlgISGAMLQMIS---HGLIAAALFFltgvTYERTHTLSIPNM 338
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 81-263 3.12e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.15  E-value: 3.12e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  81 TGQWDITQL-SYPPSCLLLTTAIAI-------KLGLVPFHFWFPEVLQGTSFITALLLSTVM---KLPLITILLITSHSL 149
Cdd:PRK12644 184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkaGIYLVARLAPGFADV 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 150 NSTLLT--SMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPK------LTMLT----FYIYTLMTVSIfl 217
Cdd:PRK12644 264 PVWRPTvlVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAMLLahalFKAALFLVVGI-- 341

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 320526272 218 tMD-TTNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 342 -IDhSTGTRDIRKLSGLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 30-192 4.24e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 4.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  30 WIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFsGTTNAWYTGQwdiTQLSYPPSCLLLTTAIAI----- 104
Cdd:PRK06458 134 WVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALF-GTILVYANAA---TVMGDGEMAILWTELLKHaslld 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 105 -----------------KLGLVPFHFWFPEV-LQGTSFITALL---LSTVMKLPLITILLITSHSLNS----TLLTSMSI 159
Cdd:PRK06458 210 ptlmklafvflligfgtKVGLFPMHAWLPDAhSEAPSPVSALLsgvLLNVALYAVLRYYILIDAAIGSdfpgRLLLIFGL 289

                        170       180       190
                 ....*....|....*....|....*....|...
gi 320526272 160 MSIALGGWMGLNQTQTRKILAFSSISHIGWMTI 192
Cdd:PRK06458 290 LSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12650 PRK12650
DUF4040 family protein;
98-263 6.86e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 47.73  E-value: 6.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  98 LTTAIAI--------KLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNST-----LLTSMSIMSIAL 164
Cdd:PRK12650 206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDVavwnwLLIIVGMITALM 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 165 GGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIYT----LMTVSIFLTMDT----TNTMNLPTLMTSWTK 236
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVvdhqAGTRDIRRLGSLWRR 365

                        170       180
                 ....*....|....*....|....*..
gi 320526272 237 TPMLSTTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 366 MPFTFVSVTIAALSMAAVPPLFGFVSK 392
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-266 3.01e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 45.68  E-value: 3.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  91 YPPSCLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNST-----LLTSMSIMSIALG 165
Cdd:PRK12647 194 YLAILLLVLGGAFTKSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTG 273

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 166 GWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPKLTMLTFYIY----TLMTVSIFLTMDT----TNTMNLPTLMTSWTKT 237
Cdd:PRK12647 274 ALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIidheTGTRDITKLGGLRRAM 353

                        170       180
                 ....*....|....*....|....*....
gi 320526272 238 PMLSTTLMLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK12647 354 PITAAAALLAALSMAGLPPLFGFLAKELI 382
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
 96-272 6.59e-05

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 44.82  E-value: 6.59e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  96 LLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTV-MKLPLITILLITSHSLNSTL-----LTSMSIMSIALGGWMG 169
Cdd:PRK08042 184 LLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYA 263

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 170 LNQTQTRKILAFSSISHIG--------WMTIIIIYNPKLTMLTFY--IYTLMTVSIFLTM---------DTTNTMNLPTL 230
Cdd:PRK08042 264 LMEHNIQRLLAYHTLENIGiillglgaGVTGIALEQPALIALGLVggLYHLLNHSLFKSVlflgagsvwFRTGHRDIEKL 343

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 320526272 231 MTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK08042 344 GGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
14-190 1.52e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 43.53  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  14 LLGTTITITSSHW---MAAW--IGLEINTLsiipLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQ 88
Cdd:PRK08168 110 LAAVHLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSA 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  89 L-----SYPPS------CLLLTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMKLP----LITILLITSHSLNSTL 153
Cdd:PRK08168 186 LwahlaAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGgfvlIRFAPLLEQAPPARWL 265

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 320526272 154 LTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWM 190
Cdd:PRK08168 266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
96-268 1.64e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.40  E-value: 1.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  96 LLLTTAIAIKLGLVPFhFWFPEVLQ----GTSFITALLLSTVMKLPLI---TILLITSHSLNSTLLTSMSIMSIALGGWM 168
Cdd:PRK12663 211 LLFLLAFGMKAALFPF-MWLPAAYHtpntEVAALFAALLTKVGIYALIrvfTLLFPQERELLHPLLATMAAITMVIGALG 289

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 169 GLNQTQTRKILAFSSISHIGWMTI-IIIYNPK-LTMLTFYIYTLMTVSIFL------TMDTTNTMNLPTLMTSWTKTPML 240
Cdd:PRK12663 290 ALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVHDMVVKTALfliagsLVRLTGYRSLQYLGGLYRKEPLF 369

                        170       180
                 ....*....|....*....|....*...
gi 320526272 241 STTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 370 GALFLILIFAIGGLPPFSGFWGKVLLVQ 397
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 30-271 2.23e-04

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 42.83  E-value: 2.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  30 WIGLEINTLSIIPLISKSHH-PRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLS-----------YPPSCLL 97
Cdd:COG1009  137 FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLaaaptilssplLTLILLL 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  98 LTTAIAIKLGLVPFHFWFPEVLQGTSFITALLLSTVMklplITI---LLITSHSLNSTLLTSMSIMSIA------LGGWM 168
Cdd:COG1009  217 LLLGAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATM----VKAgvyLLARLSPLFALSPVWLTVVAIIgaitalFAALI 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 169 GLNQTQTRKILAFSSISHIGWMTIIIiynpKLTMLTFYIYTLMTVSIF------------LTMDTTNTMNLPTLmtsWTK 236
Cdd:COG1009  293 ALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKK 365

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 320526272 237 TPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELI 271
Cdd:COG1009  366 MPITAITFLIGALSLAGIPPFAGFFSKEAILEAAL 400
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 2.70e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.89  E-value: 2.70e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  48 HHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSYPPSC--------LLLTTAIAIKLGLV------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 114 WFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNST-----LLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 189 WMTIIIIYNPK------LTMLTFYIY-------TLMTVSIFLTMDTTnTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLP 255
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLLnhatfkaCLFLVAGIVAHEAA-TRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394


                 ....*...
gi 320526272 256 PLTGFLPK 263
Cdd:PRK12649 395 PLNGFLSK 402
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-272 4.04e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 42.03  E-value: 4.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  96 LLLTTAIAIKLGLVPFHFWFPEVL-QGTSFITALLLSTVMKLPLITIL----------LITSHSLNSTLLTSMSIMSIAL 164
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYsEAPSFISVFFSGTSTKVMIYLIIrivydvfkanFVFTTLPFNNVFMILAALAIVF 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 165 GGWMGLNQTQTRKILAFSSISHIGWMTIIIIYNPK--LTMLTFYI--YTLMTVSIFLTMDTT----NTMNLPTLMTSWTK 236
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYygLAAAVAYIvnHSIVKSALFMVSGSIsyhfGTTKLEDCLNLWKS 372

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 320526272 237 TPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIK 272
Cdd:PRK12662 373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 55-227 7.35e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 41.23  E-value: 7.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  55 ATTKYFLVQAAASALLLFSGTTNAWYTG--QWDITQLS---YPPSCLLLT-----TAIAIKLGLVPFHFWFPEVL-QGTS 123
Cdd:PRK02546 166 AATKFILYTAGSSLFILLAALAMAFYGDtpTFDMTALAakdFGLGFQLLCyagllIAYGVKLPIVPLHTWLPDAHgEATA 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 124 FITALLLSTVMKL---PLITI---LLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIIIIYN 197
Cdd:PRK02546 246 PVHMLLAGILLKMggyALLRMnagMLPDAHAQFAPLLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSF 325

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 320526272 198 PKL----TMLTFYIYTLMTVSIFL----TMDTTNTMNL 227
Cdd:PRK02546 326 TDLgtsgAMLQMISHGLIGASLFFlvgaTYDRTHTLML 363
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.02e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 40.71  E-value: 1.02e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  33 LEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLS-YPPSCL-LLTTAIAIKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLAtADPEAFaLIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 111 FHFWFPEVL-QGTSFITALLLSTVMK---LPLITILLITSHSlnSTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISH 186
Cdd:PRK07234 203 SGLWLPLTHsEAEPPVSALLSGVVVKagvFPLVRCALDVPGL--DLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 187 IGWmtiiIIYNPKLTMLTFYIYTLMTVSIFLTMDTTNTMNLptlmTSWTKTPMLS---TTLMLTLLSLAGLPPLTGFLPK 263
Cdd:PRK07234 281 LGF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNF----TELISQMLGIgkwIPLTMASFSIAGFPLLAGFVSK 352


                 ....*...
gi 320526272 264 WLIIQELI 271
Cdd:PRK07234 353 VLTLKNLL 360
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 12-279 1.14e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 40.57  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  12 SILLGTTITItSSHWMAAWIGLEINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWY-TGQWDITQ-- 88
Cdd:PRK06589 125 TILIGVLIAL-SSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTkTGNLDFVSgg 203

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  89 -LSYPPSCLLLTTAIA--IKLGLVPFHFWFPEVLQGTSFITALLLSTVM----KLPLITILLITSHSLNSTLLTSMS--- 158
Cdd:PRK06589 204 lFSKNQSIILLLMFIYgiAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQRIFAEFnwl 283

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 159 ----IMSIALGGWMGLNQTQTRKILAFSSISHIGW--MTIIIIYNPKLTMLTFYIYT--LMTVSIFLTMDT----TNTMN 226
Cdd:PRK06589 284 ifipIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSiyslKKEDQ 363

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 320526272 227 LPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQELIKQELTTTS 279
Cdd:PRK06589 364 VDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLS 416
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 1.14e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 40.72  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  96 LLLTTAIAIKLGLVPFHFWFPEvlqgtSFITALLLSTVMKLPLIT-----------ILLITSHSLNsTLLTSMSIMSIAL 164
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPD-----SYPTAPAPVTAVFAGLLTkvgvyaiirthTLLFPGGGLD-TLLMVVALLTMVV 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 165 GGWMGLNQTQTRKILAFSSISHIGWMTI-IIIYNPK-LTMLTFYIYTLMTV--SIFLTMD----TTNTMNLPTLMTSWTK 236
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYMVFgIALSTVAgLSGAIYYVAHHITVqtTLFLVVGlierQAGSSSLRRLGGLAKA 366

                        170       180       190
                 ....*....|....*....|....*....|..
gi 320526272 237 TPMLSTTLMLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 367 SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 59-282 2.99e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 39.33  E-value: 2.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  59 YFLVQAAASALLLFSGTTNAWY-TGQWDITQLSYPP-----SCLLLTTAIAIKLGLVPFHFWFPEVLQGT-SFITALLLS 131
Cdd:PRK08667 166 FYFVMTQLSTVFLMLGIIVLFIqTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASpSNVSALMSG 245

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 132 TVMKLPLITILLITSHSLNSTLLTSMSIM-----SIALGGWMGLNQTQTRKILAFSSISHIG--------WMTIIIIYNP 198
Cdd:PRK08667 246 VMLKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVYGLD 325

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 199 KLTMLTF-------YIYTLMTVSIFLTMDT----TNTMNLPTLMTSWTKTPMLSTTLMLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK08667 326 TLALLALggalfhsLNHALFKSLLFLTAGSvvhaTGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLY 405

                        250
                 ....*....|....*
gi 320526272 268 QELIkQELTTTSTAI 282
Cdd:PRK08667 406 ESFF-QSFSVADPLI 419
ndhD CHL00011
NADH dehydrogenase subunit 4
 55-194 3.40e-03

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 39.16  E-value: 3.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  55 ATTKYFLVQAAASALLLFSGTTNAWYTGQ---WDITQL---SYPPSCLLLT-----TAIAIKLGLVPFHFWFPEVLQGTS 123
Cdd:CHL00011 163 SATKFILYTAGGSIFLLIGVLGMGLYGSNeptLNFETLanqSYPVALEILFyigflIAYAVKLPIIPLHTWLPDTHGEAH 242

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 320526272 124 FITALLLSTVM----KLPLITI---LLITSHSLNSTLLTSMSIMSIALGGWMGLNQTQTRKILAFSSISHIGWMTIII 194
Cdd:CHL00011 243 YSTCMLLAGILlkmgAYGLIRInmeLLPHAHSIFSPWLVIVGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGI 320
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-268 7.71e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.09  E-value: 7.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272  34 EINTLSIIPLISKSHHPRAIEATTKYFLVQAAASALLLFSGTTNAWYTGQWDITQLSY-----PPSCLLLTTAIAIKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 109 V------PFHFWFPEVLQGTSFITALLLSTVMKLPLITILLITSHSLNS--------TLLTSMSIMSIALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMLVIFKLFGGlsyfpsaqGVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320526272 175 TRKILAFSSISHIGWMTIIIIYNPKLTM-------LTFYIYT-LMTVSIFLTMDTTNTMNLPTLMTSWTKTPMLSTTLML 246
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYKsALFLGAGIVSYRTKTSNLRKLGGLLPVMPVVAFMVLC 369

                        250       260
                 ....*....|....*....|..
gi 320526272 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 370 AKLAISGVPPFNGFQSKLMLAQ 391
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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