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Conserved domains on  [gi|320336005|gb|ADW26232|]
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cytochrome b (mitochondrion) [Conocephalus maculatus]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-368 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 698.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  13 FKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFF 92
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  93 FICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAV 172
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 173 DNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLTLLEPYML 252
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 253 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQLLFWSMVT 332
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 320336005 333 IVILLTWIGARPVEDPYILTGQILTVLYFSYYLINP 368
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-368 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 698.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  13 FKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFF 92
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  93 FICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAV 172
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 173 DNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLTLLEPYML 252
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 253 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQLLFWSMVT 332
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 320336005 333 IVILLTWIGARPVEDPYILTGQILTVLYFSYYLINP 368
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
18-366 1.50e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 349.09  E-value: 1.50e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  18 NALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLY 97
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  98 LHVGRGIYYGSYNY--MYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNA 175
Cdd:COG1290  105 LHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 176 TLTRFFTF-HFVFPFIVAAMVLIHLLFLHQTGSNNPLG----LNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLTLLEPy 250
Cdd:COG1290  185 TLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 251 mLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQLLFW 328
Cdd:COG1290  264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 320336005 329 SMVTIVILLTWIGARPveDPYILTGQILTVLYFSYYLI 366
Cdd:COG1290  343 AFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 11-208 1.42e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 250.36  E-value: 1.42e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  11 PLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGAS 90
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  91 FFFICLYLHVGRGIYYGSYN--YMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWG 168
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 320336005 169 GFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSN 208
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
20-206 2.38e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 228.81  E-value: 2.38e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   20 LVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLH 99
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  100 VGRGIYYGSYNYMY--TWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATL 177
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 320336005  178 TRFFTFHFVFPFIVAAMVLIHLLFLHQTG 206
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 231-342 2.93e-13

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 67.13  E-value: 2.93e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  231 IFGFIIM--IAALVFLTLLEPYMLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPF 308
Cdd:TIGR01156  39 IFPVVILgtIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 320336005  309 Y-NTHKFRSTQFYPLNQLLFWsMVTIVILLTWIGA 342
Cdd:TIGR01156 114 IeNVNKFQNPFRRPVATTVFL-FGTVVALWLGIGA 147
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-368 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 698.46  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  13 FKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFF 92
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  93 FICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAV 172
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 173 DNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLTLLEPYML 252
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 253 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQLLFWSMVT 332
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 320336005 333 IVILLTWIGARPVEDPYILTGQILTVLYFSYYLINP 368
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 5-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 623.85  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   5 ALRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTL 84
Cdd:MTH00145   4 PLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  85 HANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQ 164
Cdd:MTH00145  84 HANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVE 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 165 WVWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFL 244
Cdd:MTH00145 164 WVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFL 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 245 TLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQ 324
Cdd:MTH00145 244 VLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQ 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 320336005 325 LLFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLINPITLNIWDNLV 378
Cdd:MTH00145 324 VLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00131
cytochrome b; Provisional
 1-366 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 619.36  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   1 MANkaLRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWF 80
Cdd:MTH00131   1 MAS--LRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  81 LRTLHANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGT 160
Cdd:MTH00131  79 IRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGN 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 161 DLVQWVWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAA 240
Cdd:MTH00131 159 TLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLA 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 241 LVFLTLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFY 320
Cdd:MTH00131 239 LTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFR 318

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 320336005 321 PLNQLLFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLI 366
Cdd:MTH00131 319 PLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLV 364
CYTB MTH00016
cytochrome b; Validated
 4-379 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 608.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   4 KALRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRT 83
Cdd:MTH00016   3 SPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  84 LHANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLV 163
Cdd:MTH00016  83 LHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 164 QWVWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVF 243
Cdd:MTH00016 163 QWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLS 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 244 LTLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLN 323
Cdd:MTH00016 243 VVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLN 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 320336005 324 QLLFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLINPITLNIWDNLVK 379
Cdd:MTH00016 323 QILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00119
cytochrome b; Provisional
 6-370 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 608.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   6 LRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLH 85
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  86 ANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQW 165
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 166 VWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLT 245
Cdd:MTH00119 165 IWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLA 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 246 LLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQL 325
Cdd:MTH00119 245 LFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQL 324

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*.
gi 320336005 326 LFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLI-NPIT 370
Cdd:MTH00119 325 LFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIlFPLL 370
CYTB MTH00191
cytochrome b; Provisional
 6-366 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 599.98  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   6 LRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLH 85
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  86 ANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQW 165
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 166 VWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLT 245
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 246 LLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQL 325
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 320336005 326 LFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLI 366
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00074
cytochrome b; Provisional
 6-376 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 597.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   6 LRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLH 85
Cdd:MTH00074   5 IRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  86 ANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQW 165
Cdd:MTH00074  85 ANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 166 VWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLT 245
Cdd:MTH00074 165 IWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLS 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 246 LLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQL 325
Cdd:MTH00074 245 LFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQI 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 320336005 326 LFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLINPITLNIWDN 376
Cdd:MTH00074 325 LFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLEN 375
CYTB MTH00100
cytochrome b; Provisional
 6-379 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 593.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   6 LRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLH 85
Cdd:MTH00100   4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  86 ANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQW 165
Cdd:MTH00100  84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 166 VWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLT 245
Cdd:MTH00100 164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 246 LLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQL 325
Cdd:MTH00100 244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQC 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 320336005 326 LFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLI-NPITLNIWDNLVK 379
Cdd:MTH00100 324 LFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILIlMPIASLIENNLLK 378
CYTB MTH00034
cytochrome b; Validated
 5-366 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 562.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   5 ALRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTL 84
Cdd:MTH00034   3 PLRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNI 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  85 HANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQ 164
Cdd:MTH00034  83 HANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQ 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 165 WVWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFL 244
Cdd:MTH00034 163 WIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 245 TLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQ 324
Cdd:MTH00034 243 ALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQ 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 320336005 325 LLFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLI 366
Cdd:MTH00034 323 IAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 4-379 1.32e-180

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 506.38  E-value: 1.32e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   4 KALRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRT 83
Cdd:MTH00224   3 KPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  84 LHANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLV 163
Cdd:MTH00224  83 IHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 164 QWVWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVF 243
Cdd:MTH00224 163 EWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 244 LTLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLN 323
Cdd:MTH00224 243 MVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLN 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 320336005 324 QLLFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLINPITLNIWDNLVK 379
Cdd:MTH00224 323 QLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 6-366 4.86e-175

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 491.91  E-value: 4.86e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   6 LRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLH 85
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  86 ANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQW 165
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 166 VWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLT 245
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 246 LLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQL 325
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 320336005 326 LFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLI 366
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLV 363
CYTB MTH00053
cytochrome b; Provisional
 3-366 8.19e-174

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 489.22  E-value: 8.19e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   3 NKALRTSHPLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLR 82
Cdd:MTH00053   2 TKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  83 TLHANGASFFFICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDL 162
Cdd:MTH00053  82 YLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDI 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 163 VQWVWGGFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALV 242
Cdd:MTH00053 162 VRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 243 FLTLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPL 322
Cdd:MTH00053 242 IIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPL 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 320336005 323 NQLLFWSMVTIVILLTWIGARPVEDPYILTGQILTVLYFSYYLI 366
Cdd:MTH00053 322 SKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLI 365
CYTB MTH00033
cytochrome b; Provisional
 18-366 1.29e-131

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 381.98  E-value: 1.29e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  18 NALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLY 97
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  98 LHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATL 177
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 178 TRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLTlLEPY---MLGD 254
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIG-IEPRietLLQD 251

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 255 PDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQLLFWSMVTIV 334
Cdd:MTH00033 252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDF 331

                        330       340       350
                 ....*....|....*....|....*....|...
gi 320336005 335 ILLTWIGARPV-EDPYILTGQILTVLYFSYYLI 366
Cdd:MTH00033 332 IILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 17-366 1.17e-123

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 360.79  E-value: 1.17e-123
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  17 NNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICL 96
Cdd:MTH00086   4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  97 YLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNAT 176
Cdd:MTH00086  84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 177 LTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGfIIMIAALVFLTLLEPYMLGDPD 256
Cdd:MTH00086 164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPE 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 257 NFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHkfrSTQFYPLNQLLFWSMVTIVIL 336
Cdd:MTH00086 243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVI 319

                        330       340       350
                 ....*....|....*....|....*....|
gi 320336005 337 LTWIGARPVEDPYILTGQILTVLYFSYYLI 366
Cdd:MTH00086 320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
18-366 1.50e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 349.09  E-value: 1.50e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  18 NALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLY 97
Cdd:COG1290   25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  98 LHVGRGIYYGSYNY--MYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNA 175
Cdd:COG1290  105 LHMFRGFFYGAYKKprELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDA 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 176 TLTRFFTF-HFVFPFIVAAMVLIHLLFLHQTGSNNPLG----LNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLTLLEPy 250
Cdd:COG1290  185 TLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP- 263

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 251 mLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIP--NKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQLLFW 328
Cdd:COG1290  264 -INPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGV 342

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 320336005 329 SMVTIVILLTWIGARPveDPYILTGQILTVLYFSYYLI 366
Cdd:COG1290  343 AFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00046
cytochrome b; Validated
 14-359 4.98e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 256.83  E-value: 4.98e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  14 KIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFF 93
Cdd:MTH00046   3 SLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  94 ICLYLHVGRGIYYGSYNYMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVD 173
Cdd:MTH00046  83 ILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVT 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 174 NATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSNNPLGL-NSDVDKIPFHPYFSFKDIFGFIIMIAALVFLTLLEPYML 252
Cdd:MTH00046 163 GVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 253 GDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIaLVMSIAILMILPFYNThkfrSTQFYPLNQLLFWSMVT 332
Cdd:MTH00046 243 LDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNG----SSVYSVWRQVNFWLIVS 317

                        330       340
                 ....*....|....*....|....*..
gi 320336005 333 IVILLTWIGARPVEDPYILTGQILTVL 359
Cdd:MTH00046 318 LFFSLSYLGGCHPEYPYLLISQLFSVL 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 11-208 1.42e-82

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 250.36  E-value: 1.42e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  11 PLFKIANNALVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGAS 90
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  91 FFFICLYLHVGRGIYYGSYN--YMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWG 168
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKkpRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 320336005 169 GFAVDNATLTRFFTFHFVFPFIVAAMVLIHLLFLHQTGSN 208
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
20-206 2.38e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 228.81  E-value: 2.38e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   20 LVDLPAPSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLH 99
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  100 VGRGIYYGSYNYMY--TWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATL 177
Cdd:pfam00033  81 IFRGLYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 320336005  178 TRFFTFHFVFPFIVAAMVLIHLLFLHQTG 206
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 209-355 4.49e-50

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 165.13  E-value: 4.49e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 209 NPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLTLLEPYMLGDPDNFTPANPLVTPVHIQPEWYFLFAYAILRSIPN 288
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320336005 289 KLGGVIALVMSIAILMILPFYNTHKFRStQFYPLNQLLFWSMVTIVILLTWIGARPVEDPYILTGQI 355
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
260-360 2.42e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.39  E-value: 2.42e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  260 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPFYNTHKFRSTQFYPLNQLLFWSMVTIVILLTW 339
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 320336005  340 IGARPVEDPYILTGQILTVLY 360
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
90-255 2.58e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 145.46  E-value: 2.58e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005   90 SFFFICLYLHVGRGIYYGSYNY--MYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVW 167
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  168 GGFAVDNATLTRFFTF-HFVFPFIVAAMVLIHLLFLHQTGSNNPLGLNSDVDKIPFHPYFSFKDIFGFIIMIAALVFLTL 246
Cdd:pfam13631  81 GGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 320336005  247 LEPYMLGDP 255
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 35-211 3.50e-31

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 117.89  E-value: 3.50e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  35 FGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGIYYGSYN--YM 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKkpRE 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 113 YTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTFHFVFP-FIV 191
Cdd:PRK03735 124 LNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHVFFLpWAL 203

                        170       180
                 ....*....|....*....|
gi 320336005 192 AAMVLIHLLFLHQTGSNNPL 211
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 26-211 2.75e-26

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 104.80  E-value: 2.75e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  26 PSNISAWWNFGSLLGLCLMIQIVTGLFLAMHYTAHIDLAFSSVAHICRDVNFGWFLRTLHANGASFFFICLYLHVGRGIY 105
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 106 YGSYN--YMYTWMTGVVILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGTDLVQWVWGGFAVDNATLTRFFTF 183
Cdd:CHL00070 107 TGGFKkpRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 320336005 184 HFVFP-FIVAAMVLIHLLFLHQTGSNNPL 211
Cdd:CHL00070 187 HTFVLpLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 231-351 2.18e-16

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 75.99  E-value: 2.18e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 231 IFGFIIM--IAALVFLTLLEPYMLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPF 308
Cdd:COG5679   40 IFPVVILgtIALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 320336005 309 Y-NTHKFRSTQFYPLNQLLFwSMVTIVILLTWIGAR-PVEDPYIL 351
Cdd:COG5679  115 IeNVNKFQNPFRRPVATAVF-LFGTLVTLWLGIGAAlPIDKSLTL 158
petD CHL00058
cytochrome b6/f complex subunit IV
 231-342 5.81e-15

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 71.96  E-value: 5.81e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005 231 IFGFIIM--IAALVFLTLLEPYMLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPF 308
Cdd:CHL00058  39 IFPVVILgtIACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPF 113

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 320336005 309 Y-NTHKFRSTQFYPLNQLLFwSMVTIVILLTWIGA 342
Cdd:CHL00058 114 LeNVNKFQNPFRRPVATTVF-LIGTAVALWLGIGA 147
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 231-342 2.93e-13

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 67.13  E-value: 2.93e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320336005  231 IFGFIIM--IAALVFLTLLEPYMLGDPdnftpANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIAILMILPF 308
Cdd:TIGR01156  39 IFPVVILgtIACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPF 113

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 320336005  309 Y-NTHKFRSTQFYPLNQLLFWsMVTIVILLTWIGA 342
Cdd:TIGR01156 114 IeNVNKFQNPFRRPVATTVFL-FGTVVALWLGIGA 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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