|
Name |
Accession |
Description |
Interval |
E-value |
| PRK10767 |
PRK10767 |
chaperone protein DnaJ; Provisional |
428-491 |
1.50e-34 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 236757 [Multi-domain] Cd Length: 371 Bit Score: 133.73 E-value: 1.50e-34
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK10767 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYD 67
|
|
| DnaJ_bact |
TIGR02349 |
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ... |
429-491 |
1.96e-33 |
|
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Pssm-ID: 274090 [Multi-domain] Cd Length: 354 Bit Score: 130.41 E-value: 1.96e-33
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320038307 429 DYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKE-AEEKFKEINEAYEVLSDPEKRAQYD 62
|
|
| DnaJ |
pfam00226 |
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ... |
429-491 |
5.17e-32 |
|
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.
Pssm-ID: 395170 [Multi-domain] Cd Length: 63 Bit Score: 117.19 E-value: 5.17e-32
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320038307 429 DYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:pfam00226 1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
|
|
| PRK14297 |
PRK14297 |
molecular chaperone DnaJ; |
428-491 |
3.84e-28 |
|
molecular chaperone DnaJ;
Pssm-ID: 184611 [Multi-domain] Cd Length: 380 Bit Score: 115.65 E-value: 3.84e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYD 67
|
|
| DnaJ |
COG0484 |
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ... |
429-491 |
5.81e-28 |
|
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440252 [Multi-domain] Cd Length: 139 Bit Score: 108.64 E-value: 5.81e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320038307 429 DYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:COG0484 1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGDPEAEEKFKEINEAYEVLSDPEKRAAYD 63
|
|
| PRK14277 |
PRK14277 |
chaperone protein DnaJ; Provisional |
426-499 |
1.91e-27 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184599 [Multi-domain] Cd Length: 386 Bit Score: 113.74 E-value: 1.91e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 426 QRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYDN-GDDLLDP 499
Cdd:PRK14277 3 AKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQfGHAAFDP 77
|
|
| PRK14280 |
PRK14280 |
molecular chaperone DnaJ; |
427-491 |
3.64e-27 |
|
molecular chaperone DnaJ;
Pssm-ID: 237656 [Multi-domain] Cd Length: 376 Bit Score: 112.89 E-value: 3.64e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 427 RKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEG-ADEKFKEISEAYEVLSDDQKRAQYD 66
|
|
| PRK14289 |
PRK14289 |
molecular chaperone DnaJ; |
425-491 |
4.95e-27 |
|
molecular chaperone DnaJ;
Pssm-ID: 237660 [Multi-domain] Cd Length: 386 Bit Score: 112.62 E-value: 4.95e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320038307 425 SQRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYD 68
|
|
| PRK14295 |
PRK14295 |
molecular chaperone DnaJ; |
428-496 |
7.27e-27 |
|
molecular chaperone DnaJ;
Pssm-ID: 237665 [Multi-domain] Cd Length: 389 Bit Score: 112.25 E-value: 7.27e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYDNGDDL 496
Cdd:PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSL 77
|
|
| terminal_TopJ |
NF037946 |
terminal organelle assembly protein TopJ; |
425-504 |
1.16e-26 |
|
terminal organelle assembly protein TopJ;
Pssm-ID: 468284 [Multi-domain] Cd Length: 440 Bit Score: 112.61 E-value: 1.16e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 425 SQRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYDN-GDDLLDPSDMF 503
Cdd:NF037946 2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPD-AAEIFAEINEAYEVLSNPEKRANYDKyGHDGVDGEGGF 80
|
.
gi 320038307 504 A 504
Cdd:NF037946 81 G 81
|
|
| PRK14298 |
PRK14298 |
chaperone protein DnaJ; Provisional |
425-491 |
6.29e-26 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184612 [Multi-domain] Cd Length: 377 Bit Score: 109.55 E-value: 6.29e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320038307 425 SQRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14298 2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPD-AEEKFKEISEAYAVLSDAEKRAQYD 67
|
|
| PRK14294 |
PRK14294 |
chaperone protein DnaJ; Provisional |
425-491 |
6.81e-26 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237664 [Multi-domain] Cd Length: 366 Bit Score: 109.08 E-value: 6.81e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320038307 425 SQRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYD 67
|
|
| PRK14278 |
PRK14278 |
chaperone protein DnaJ; Provisional |
428-499 |
1.64e-25 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237654 [Multi-domain] Cd Length: 378 Bit Score: 108.22 E-value: 1.64e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDsDKSDELFKEIGEAYEVLSDPQKRASYDNGDDLLDP 499
Cdd:PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD-EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLES 73
|
|
| DnaJ |
smart00271 |
DnaJ molecular chaperone homology domain; |
428-486 |
5.41e-25 |
|
DnaJ molecular chaperone homology domain;
Pssm-ID: 197617 [Multi-domain] Cd Length: 60 Bit Score: 97.69 E-value: 5.41e-25
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDK-SDELFKEIGEAYEVLSDPQK 486
Cdd:smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEeAEEKFKEINEAYEVLSDPEK 60
|
|
| DnaJ |
cd06257 |
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ... |
429-483 |
1.58e-24 |
|
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Pssm-ID: 99751 [Multi-domain] Cd Length: 55 Bit Score: 96.08 E-value: 1.58e-24
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 429 DYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSD 483
Cdd:cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55
|
|
| PRK14276 |
PRK14276 |
chaperone protein DnaJ; Provisional |
428-491 |
1.87e-24 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237653 [Multi-domain] Cd Length: 380 Bit Score: 105.17 E-value: 1.87e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14276 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPG-AEEKYKEVQEAYETLSDPQKRAAYD 66
|
|
| PRK14281 |
PRK14281 |
chaperone protein DnaJ; Provisional |
427-491 |
3.00e-24 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237657 [Multi-domain] Cd Length: 397 Bit Score: 104.89 E-value: 3.00e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 427 RKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYD 66
|
|
| PRK14291 |
PRK14291 |
chaperone protein DnaJ; Provisional |
426-491 |
5.64e-24 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237661 [Multi-domain] Cd Length: 382 Bit Score: 103.70 E-value: 5.64e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320038307 426 QRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14291 1 AKKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPE-AEEKFKEINEAYQVLSDPEKRKLYD 65
|
|
| PRK14284 |
PRK14284 |
chaperone protein DnaJ; Provisional |
429-491 |
7.73e-24 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237658 [Multi-domain] Cd Length: 391 Bit Score: 103.38 E-value: 7.73e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320038307 429 DYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYD 64
|
|
| PRK14282 |
PRK14282 |
chaperone protein DnaJ; Provisional |
426-491 |
1.40e-23 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184603 [Multi-domain] Cd Length: 369 Bit Score: 102.18 E-value: 1.40e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320038307 426 QRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDK-SDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14282 2 EKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKeAEQKFKEIQEAYEVLSDPQKRAMYD 68
|
|
| PRK14286 |
PRK14286 |
chaperone protein DnaJ; Provisional |
428-491 |
2.48e-23 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172774 [Multi-domain] Cd Length: 372 Bit Score: 101.60 E-value: 2.48e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYD 67
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
76-403 |
3.35e-23 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 99.42 E-value: 3.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 76 LAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRP 155
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 156 SEALAIYSQIQppASTKDKAPAEAMLRYIAQAEEtlkqdkgggsmvlySLDQAvrglgtgmtqprkwllmrIEAYLKmgn 235
Cdd:COG2956 93 DRAEELLEKLL--ELDPDDAEALRLLAEIYEQEG--------------DWEKA------------------IEVLER--- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 236 inalgdaqniamsLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFK 315
Cdd:COG2956 136 -------------LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLL------------AELYLE 190
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 316 ARRYREAIKLYTAGLEIDPTNKDINSKLlqnrAQAHVNLNEYEQAIEDCTKALELDPTYSkAKRVRAKAYGGTGDWEKAL 395
Cdd:COG2956 191 QGDYEEAIAALERALEQDPDYLPALPRL----AELYEKLGDPEEALELLRKALELDPSDD-LLLALADLLERKEGLEAAL 265
|
....*...
gi 320038307 396 NELKSIAE 403
Cdd:COG2956 266 ALLERQLR 273
|
|
| PRK14301 |
PRK14301 |
chaperone protein DnaJ; Provisional |
427-491 |
3.56e-23 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237668 [Multi-domain] Cd Length: 373 Bit Score: 101.36 E-value: 3.56e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 427 RKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYD 67
|
|
| PTZ00037 |
PTZ00037 |
DnaJ_C chaperone protein; Provisional |
428-503 |
7.03e-23 |
|
DnaJ_C chaperone protein; Provisional
Pssm-ID: 240236 [Multi-domain] Cd Length: 421 Bit Score: 101.05 E-value: 7.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKsdelFKEIGEAYEVLSDPQKRASYD--------NGDDLLDP 499
Cdd:PTZ00037 28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEK----FKEISRAYEVLSDPEKRKIYDeygeegleGGEQPADA 103
|
....
gi 320038307 500 SDMF 503
Cdd:PTZ00037 104 SDLF 107
|
|
| SEC63 |
COG5407 |
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ... |
429-488 |
7.05e-23 |
|
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 444165 [Multi-domain] Cd Length: 61 Bit Score: 91.60 E-value: 7.05e-23
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 429 DYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRA 488
Cdd:COG5407 1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDPKAEERFKEINEAYELLSDAEKRA 60
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
250-498 |
1.11e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 97.00 E-value: 1.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 250 LRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLYTAG 329
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL------------GLAYLRLGRYEEALADYEQA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 330 LEIDPTNKDInsklLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNPHER 409
Cdd:COG0457 69 LELDPDDAEA----LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 410 GIQEEIRNAEWELKKSQ------RKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSD 483
Cdd:COG0457 145 DALYNLGIALEKLGRYEealellEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250
....*....|....*
gi 320038307 484 PQKRASYDNGDDLLD 498
Cdd:COG0457 225 LALALLLALRLAALA 239
|
|
| PRK14293 |
PRK14293 |
molecular chaperone DnaJ; |
429-491 |
1.13e-22 |
|
molecular chaperone DnaJ;
Pssm-ID: 237663 [Multi-domain] Cd Length: 374 Bit Score: 99.68 E-value: 1.13e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320038307 429 DYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14293 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPG-AEDRFKEINRAYEVLSDPETRARYD 65
|
|
| PRK14279 |
PRK14279 |
molecular chaperone DnaJ; |
417-491 |
2.74e-22 |
|
molecular chaperone DnaJ;
Pssm-ID: 237655 [Multi-domain] Cd Length: 392 Bit Score: 99.04 E-value: 2.74e-22
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 417 NAEWelkksQRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14279 3 QREW-----VEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYD 72
|
|
| PRK14283 |
PRK14283 |
chaperone protein DnaJ; Provisional |
425-503 |
9.04e-22 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 184604 [Multi-domain] Cd Length: 378 Bit Score: 97.20 E-value: 9.04e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 425 SQRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYDN----GDDLLDPS 500
Cdd:PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEG-AEEKFKEISEAYAVLSDDEKRQRYDQfghaGMDGFSQE 80
|
...
gi 320038307 501 DMF 503
Cdd:PRK14283 81 DIF 83
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
111-406 |
1.02e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.18 E-value: 1.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 111 RAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQIqppastkdkapaeamlryIAQAEET 190
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL------------------LERDPDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 191 LkqdkgggsmvlysldQAVRGLGtgmtqprkwllmriEAYLKMGNINalgDAQNIAMSLLRENSQDPDALFLRGRLFYLQ 270
Cdd:COG2956 76 A---------------EALLELA--------------QDYLKAGLLD---RAEELLEKLLELDPDDAEALRLLAEIYEQE 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 271 GDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLYTAGLEIDPTNkdinSKLLQNRAQA 350
Cdd:COG2956 124 GDWEKAIEVLERLLKLGPENAHAYCEL------------AELYLEQGDYDEAIEALEKALKLDPDC----ARALLLLAEL 187
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 320038307 351 HVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNP 406
Cdd:COG2956 188 YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| PRK14299 |
PRK14299 |
chaperone protein DnaJ; Provisional |
428-491 |
1.20e-21 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237667 [Multi-domain] Cd Length: 291 Bit Score: 95.39 E-value: 1.20e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14299 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPG-AEEKFKEINEAYTVLSDPEKRRIYD 66
|
|
| PRK14290 |
PRK14290 |
chaperone protein DnaJ; Provisional |
428-491 |
2.73e-21 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172778 [Multi-domain] Cd Length: 365 Bit Score: 95.38 E-value: 2.73e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDS-DKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNkAEAEEKFKEISEAYEVLSDPQKRRQYD 67
|
|
| PRK14285 |
PRK14285 |
chaperone protein DnaJ; Provisional |
427-491 |
3.77e-21 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172773 [Multi-domain] Cd Length: 365 Bit Score: 95.06 E-value: 3.77e-21
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 427 RKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYD 66
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
5-374 |
6.31e-20 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 93.12 E-value: 6.31e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 5 RDEARGSMDLESETPTSPSSfvtPSQTSPATSATETNGVNSKIADEDRSPTPPPHTVTPppapvvdAEACKLAGNKFFKA 84
Cdd:TIGR00990 71 KKERRKRKQAEKETEGKTEE---KKSTAPKNAPVEPADELPEIDESSVANLSEEERKKY-------AAKLKEKGNKAYRN 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 85 GNYQRAILEYTKAVEAQPiSPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQ 164
Cdd:TIGR00990 141 KDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 165 IQPPASTKDKAPAEAMLRYI-----AQAEETL--KQDKGGGSMVLYSLDQAVRG----------------LGTGMTQPRK 221
Cdd:TIGR00990 220 SCIIDGFRNEQSAQAVERLLkkfaeSKAKEILetKPENLPSVTFVGNYLQSFRPkprpagledsneldeeTGNGQLQLGL 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 222 ---------WLLMRIEAYLKMGNINALGDAQNIAMSllrensqdpdalfLRGRLFYLQGDNEQAIKHFKRALSLDPDSTE 292
Cdd:TIGR00990 300 kspeskadeSYEEAARAFEKALDLGKLGEKEAIALN-------------LRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 293 TVKYLRMVQKLLRHKDEGNAAFKarryreaiklytAGLEIDPTNKDInsklLQNRAQAHVNLNEYEQAIEDCTKALELDP 372
Cdd:TIGR00990 367 SYIKRASMNLELGDPDKAEEDFD------------KALKLNSEDPDI----YYHRAQLHFIKGEFAQAGKDYQKSIDLDP 430
|
..
gi 320038307 373 TY 374
Cdd:TIGR00990 431 DF 432
|
|
| CbpA |
COG2214 |
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]; |
425-491 |
7.22e-20 |
|
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
Pssm-ID: 441816 [Multi-domain] Cd Length: 91 Bit Score: 84.38 E-value: 7.22e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 320038307 425 SQRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKN-RDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:COG2214 2 PDLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGgELKALAEELFQRLNEAYEVLSDPERRAEYD 69
|
|
| termin_org_DnaJ |
TIGR03835 |
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ ... |
427-504 |
9.38e-20 |
|
terminal organelle assembly protein TopJ; This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. [Cellular processes, Chemotaxis and motility]
Pssm-ID: 274808 [Multi-domain] Cd Length: 871 Bit Score: 93.34 E-value: 9.38e-20
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320038307 427 RKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYDN-GDDLLDPSDMFA 504
Cdd:TIGR03835 1 KRDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPD-AASIFAEINEANDVLSNPKKRANYDKyGHDGVDREDDFD 78
|
|
| PRK14296 |
PRK14296 |
chaperone protein DnaJ; Provisional |
426-504 |
1.44e-19 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237666 [Multi-domain] Cd Length: 372 Bit Score: 90.39 E-value: 1.44e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 426 QRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDElFKEIGEAYEVLSDPQKRASYDN-GDDLLDPSDMFA 504
Cdd:PRK14296 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDK-MVEINEAADVLLDKDKRKQYDQfGHAAFDGSSGFS 80
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
143-412 |
1.67e-19 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.98 E-value: 1.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 143 HRLARIYTALGRPSEALAIYSQIQPPASTKDKAPAEAMLRYIAQAEETLKQDKGGGSMVLYSLDQAVRGLGtgmtqprKW 222
Cdd:COG3914 8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA-------AL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 223 LLMRIEAYLKMGNinaLGDAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqk 302
Cdd:COG3914 81 LELAALLLQALGR---YEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNL----- 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 303 llrhkdeGNAAFKARRYREAIKLYTAGLEIDPTnkdiNSKLLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRA 382
Cdd:COG3914 153 -------GEALRRLGRLEEAIAALRRALELDPD----NAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL 221
|
250 260 270
....*....|....*....|....*....|
gi 320038307 383 KAYGGTGDWEKALNELKSIAESNPHERGIQ 412
Cdd:COG3914 222 FALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| PRK14292 |
PRK14292 |
chaperone protein DnaJ; Provisional |
429-505 |
2.15e-19 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237662 [Multi-domain] Cd Length: 371 Bit Score: 89.95 E-value: 2.15e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 429 DYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSdKSDELFKEIGEAYEVLSDPQKRASYDN---------------G 493
Cdd:PRK14292 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEK-GAAEKFAQINEAYAVLSDAEKRAHYDRfgtapgagmpggdpfG 81
|
90
....*....|..
gi 320038307 494 DDLLDPSDMFAR 505
Cdd:PRK14292 82 GMGFDPMDIFEQ 93
|
|
| PRK14287 |
PRK14287 |
chaperone protein DnaJ; Provisional |
427-491 |
4.03e-19 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 237659 [Multi-domain] Cd Length: 371 Bit Score: 89.30 E-value: 4.03e-19
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 427 RKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDElFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDK-FKEVKEAYDTLSDPQKKAHYD 66
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
227-427 |
4.45e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.48 E-value: 4.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 227 IEAYLKMGNI----NALGDAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqk 302
Cdd:COG2956 42 VEAHLALGNLyrrrGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLL----- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 303 llrhkdeGNAAFKARRYREAIKLYTAGLEIDPTNKDINSKLlqnrAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRA 382
Cdd:COG2956 117 -------AEIYEQEGDWEKAIEVLERLLKLGPENAHAYCEL----AELYLEQGDYDEAIEALEKALKLDPDCARALLLLA 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 320038307 383 KAYGGTGDWEKALNELKSIAESNPHERGIQEEIRNAEWELKKSQR 427
Cdd:COG2956 186 ELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEE 230
|
|
| PRK10266 |
PRK10266 |
curved DNA-binding protein; |
428-492 |
1.88e-18 |
|
curved DNA-binding protein;
Pssm-ID: 182347 [Multi-domain] Cd Length: 306 Bit Score: 86.03 E-value: 1.88e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDkSDELFKEIGEAYEVLSDPQKRASYDN 492
Cdd:PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPD-AEARFKEVAEAWEVLSDEQRRAEYDQ 67
|
|
| PRK14300 |
PRK14300 |
chaperone protein DnaJ; Provisional |
428-491 |
4.60e-18 |
|
chaperone protein DnaJ; Provisional
Pssm-ID: 172788 [Multi-domain] Cd Length: 372 Bit Score: 85.84 E-value: 4.60e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDkNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPD-TTDAKDAEKKFKEINAAYDVLKDEQKRAAYD 65
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
261-408 |
6.03e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 78.23 E-value: 6.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 261 FLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLYTAGLEIDPTNKDIN 340
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLAL------------GNLYRRRGEYDRAIRIHQKLLERDPDRAEAL 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 320038307 341 SKLlqnrAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNPHE 408
Cdd:COG2956 80 LEL----AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN 143
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
254-408 |
7.93e-16 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.46 E-value: 7.93e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 254 SQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLYTAGLEID 333
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALL------------GEILLQLGDLDEAIVLLHEALELD 68
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 334 PTNKDInsklLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNPHE 408
Cdd:COG4783 69 PDEPEA----RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
223-374 |
1.04e-15 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 74.07 E-value: 1.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 223 LLMRIEAYLKMGNINalgDAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqk 302
Cdd:COG4783 7 LYALAQALLLAGDYD---EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL----- 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 320038307 303 llrhkdeGNAAFKARRYREAIKLYTAGLEIDPTNKDInsklLQNRAQAHVNLNEYEQAIEDCTKALELDPTY 374
Cdd:COG4783 79 -------GLALLKAGDYDEALALLEKALKLDPEHPEA----YLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
70-363 |
1.23e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.58 E-value: 1.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 150 TALGRPSEALAIYSQIqppastkdkapaeamlryiaqaeetlkqdkgggsmvlysldqavrglgtgmtqprkwllmriea 229
Cdd:COG0457 87 QALGRYEEALEDYDKA---------------------------------------------------------------- 102
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 230 ylkmgninalgdaqniamslLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLRMVQKLLRHKDE 309
Cdd:COG0457 103 --------------------LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEE 162
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 320038307 310 GNAAFKARRYREAIKLYTAGLEIDPTNKDINSKLLQNRAQAHVNLNEYEQAIED 363
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
98-434 |
3.57e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.43 E-value: 3.57e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 98 VEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQIqppastkdkapa 177
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA------------ 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 178 eamlryiaqaeetlkqdkgggsmvlysldqavrglgtgmtqprkwllmrieaylkmgninalgdaqniamslLRENSQDP 257
Cdd:COG0457 69 ------------------------------------------------------------------------LELDPDDA 76
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 258 DALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLYTAGLEIDPTNK 337
Cdd:COG0457 77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNL------------GLALLELGRYDEAIEAYERALELDPDDA 144
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 338 DInsklLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRvRAKAYGGTGDWEKALNELKSIAESNPHERGIQEEIRN 417
Cdd:COG0457 145 DA----LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA-LGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
|
330
....*....|....*..
gi 320038307 418 AEWELKKSQRKDYYKIL 434
Cdd:COG0457 220 AELLLLALALLLALRLA 236
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
250-382 |
7.40e-15 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 71.19 E-value: 7.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 250 LRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLYTAG 329
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL------------AEALLAAGDTEEAEELLERA 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 320038307 330 LEIDPTNKDInsklLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRA 382
Cdd:COG4235 78 LALDPDNPEA----LYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
70-269 |
1.77e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.12 E-value: 1.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:COG0457 41 DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLAL 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 150 TALGRPSEALAIYSQ---IQP--PASTKDKAPAEAMLRYIAQAEETLKQDKGGGSMVLYSLDQAVRGLGTGMTQPRKWLL 224
Cdd:COG0457 121 LELGRYDEAIEAYERaleLDPddADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALL 200
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 320038307 225 MRIEAYLKMGNINALGDAQNIAMSLLRENSQDPDALFLRGRLFYL 269
Cdd:COG0457 201 LALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
71-289 |
3.10e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.41 E-value: 3.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 71 AEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYT 150
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 151 ALGRPSEALAIYSQIqppastkdkapaeamlryiaqaeetlkqdkgggsmvlysldqavrglgtgmtqprkwllmrieay 230
Cdd:COG3914 158 RLGRLEEAIAALRRA----------------------------------------------------------------- 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 320038307 231 lkmgninalgdaqniamslLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPD 289
Cdd:COG3914 173 -------------------LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPD 212
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
70-187 |
1.96e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 67.34 E-value: 1.96e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|....*...
gi 320038307 150 TALGRPSEALAIYSQIQppASTKDKAPAEAMLRYIAQA 187
Cdd:COG4235 96 FQQGDYAEAIAAWQKLL--ALLPADAPARLLEASIAEA 131
|
|
| PRK14288 |
PRK14288 |
molecular chaperone DnaJ; |
430-491 |
3.33e-13 |
|
molecular chaperone DnaJ;
Pssm-ID: 172776 [Multi-domain] Cd Length: 369 Bit Score: 71.26 E-value: 3.33e-13
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 320038307 430 YYKILGVEKTATDQEIKKAYRKLAIQHHPDKNRDSDKSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PRK14288 5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYD 66
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
275-418 |
4.86e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 66.18 E-value: 4.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 275 QAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLYTAGLEIDPTNKDInsklLQNRAQAHVNL 354
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLL------------GRAYLRLGRYDEALAAYEKALRLDPDNADA----LLDLAEALLAA 64
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 320038307 355 NEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNPHE---RGIQEEIRNA 418
Cdd:COG4235 65 GDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADapaRLLEASIAEA 131
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
307-398 |
5.45e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 71.55 E-value: 5.45e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 307 KDEGNAAFKARRYREAIKLYTAGLEIDPtnkdiNSKLLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYG 386
Cdd:TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKP-----DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205
|
90
....*....|..
gi 320038307 387 GTGDWEKALNEL 398
Cdd:TIGR00990 206 GLGKYADALLDL 217
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
70-165 |
1.21e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.41 E-value: 1.21e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:COG3914 111 NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL 190
|
90
....*....|....*.
gi 320038307 150 TALGRPSEALAIYSQI 165
Cdd:COG3914 191 QDLGRLEEAIAAYRRA 206
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
84-404 |
1.64e-12 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 70.50 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 84 AGNYQRAILEYTKAVEAQP----ISPTYLSNRAAayiSANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEAL 159
Cdd:PRK11447 125 TGRTEEALASYDKLFNGAPpeldLAVEYWRLVAK---LPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGF 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 160 AIYSQIQPPASTKDKAP----------------AEAMLRYIAQAEETLKQDKGGGSmvlysLDQAVRGLGTGMTQPRKWL 223
Cdd:PRK11447 202 AVLEQMAKSPAGRDAAAqlwygqikdmpvsdasVAALQKYLQVFSDGDSVAAARSQ-----LAEQQKQLADPAFRARAQG 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 224 LMRIEAYLKMGNINALGDAqniamslLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLRMVQK- 302
Cdd:PRK11447 277 LAAVDSGQGGKAIPELQQA-------VRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVn 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 303 ---LLRHkdEGNAAFKARRYREAIKLYTAGLEIDPTnkdiNSKLLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKR 379
Cdd:PRK11447 350 rywLLIQ--QGDAALKANNLAQAERLYQQARQVDNT----DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423
|
330 340
....*....|....*....|....*
gi 320038307 380 VRAKAYGGTGDwEKALNELKSIAES 404
Cdd:PRK11447 424 GLANLYRQQSP-EKALAFIASLSAS 447
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
70-164 |
1.79e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.83 E-value: 1.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:COG4783 37 NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAY 116
|
90
....*....|....*
gi 320038307 150 TALGRPSEALAIYSQ 164
Cdd:COG4783 117 RALGRPDEAIAALEK 131
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
251-403 |
3.53e-12 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 65.48 E-value: 3.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 251 RENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLRMVqkLLRHKDegnaafkarrYREAIKLYTAGL 330
Cdd:NF040959 65 RIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVA--LLKIKD----------YEKAVEDLEEAL 132
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320038307 331 EIDPTNKDINSKLlqnrAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAE 403
Cdd:NF040959 133 EEKPDNFNLNYRL----GLALDGLGQYDKAIEAFQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFKKAME 201
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
71-402 |
7.11e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 68.19 E-value: 7.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 71 AEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYT 150
Cdd:TIGR02917 601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 151 ALGRPSEALAIYSQIQppaSTKDKAPAEAMLR---YIAQAEETLKQDKGGGSMVLYSLDQAVRGLGtgmtqprkwllmri 227
Cdd:TIGR02917 681 AAKRTESAKKIAKSLQ---KQHPKAALGFELEgdlYLRQKDYPAAIQAYRKALKRAPSSQNAIKLH-------------- 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 228 EAYLKMGNINalgDAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLRMVqkLLRHK 307
Cdd:TIGR02917 744 RALLASGNTA---EAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWL--YLELK 818
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 308 DEgnaafkarryrEAIKLYTAGLEIDPTNKDInsklLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGG 387
Cdd:TIGR02917 819 DP-----------RALEYAERALKLAPNIPAI----LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLA 883
|
330
....*....|....*
gi 320038307 388 TGDWEKALNELKSIA 402
Cdd:TIGR02917 884 TGRKAEARKELDKLL 898
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
70-407 |
9.80e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 67.80 E-value: 9.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:TIGR02917 21 SPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAY 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 150 TALGRPSEALAIYsqiqPPASTKDKAPAEAMLRYIAQAEETLKQdkgggsmvlysLDQAVRGLGTGMT-QPRKWLLMRIE 228
Cdd:TIGR02917 101 LLQGKFQQVLDEL----PGKTLLDDEGAAELLALRGLAYLGLGQ-----------LELAQKSYEQALAiDPRSLYAKLGL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 229 AYLKMGNiNALGDAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDStetvkylrmVQKLLRhkd 308
Cdd:TIGR02917 166 AQLALAE-NRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNN---------IAVLLA--- 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 309 EGNAAFKARRYREAIKLYTAGLEIDPTnkdiNSKLLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGT 388
Cdd:TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPN----SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQL 308
|
330
....*....|....*....
gi 320038307 389 GDWEKALNELKSIAESNPH 407
Cdd:TIGR02917 309 GNLEQAYQYLNQILKYAPN 327
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
70-188 |
1.85e-11 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 63.78 E-value: 1.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:COG4785 72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIAL 151
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 320038307 150 TALGRPSEALAIYSQiqppASTKDKAPAEAML-RYIAQAE 188
Cdd:COG4785 152 YYLGRYELAIADLEK----ALELDPNDPERALwLYLAERK 187
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
222-455 |
2.50e-11 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 63.40 E-value: 2.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 222 WLLMRIEAYLKMGNINALGDAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAikhfkrALSLDPDSTETVKYLRMVQ 301
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAA------AALAAERIDRALALPDLAQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 302 KLLrhkDEGNAAFKARRYREAIKLYTAGLEIDPTNKDInsklLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVR 381
Cdd:COG4785 75 LYY---ERGVAYDSLGDYDLAIADFDQALELDPDLAEA----YNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320038307 382 AKAYGGTGDWEKALNELKSIAESNPH--ERGIQEEIRNAEWELKKSQRKDYYKILGVEKTATDQEIKKAYRKLAIQ 455
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNdpERALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| DjlA |
COG1076 |
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones]; |
426-485 |
2.66e-11 |
|
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440694 [Multi-domain] Cd Length: 75 Bit Score: 59.43 E-value: 2.66e-11
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320038307 426 QRKDYYKILGVEKTATDQEIKKAYRKLAIQHHPDK------NRDSDKSDELFKEIGEAYEVLSDPQ 485
Cdd:COG1076 2 QLDDAFELLGLPPDADDAELKRAYRKLQREHHPDRlaaglpEEEQRLALQKAAAINEAYETLKDPR 67
|
|
| djlA |
PRK09430 |
co-chaperone DjlA; |
428-460 |
2.93e-11 |
|
co-chaperone DjlA;
Pssm-ID: 236512 [Multi-domain] Cd Length: 267 Bit Score: 64.06 E-value: 2.93e-11
10 20 30
....*....|....*....|....*....|...
gi 320038307 428 KDYYKILGVEKTATDQEIKKAYRKLAIQHHPDK 460
Cdd:PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
81-406 |
4.69e-11 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 65.49 E-value: 4.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 81 FFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALA 160
Cdd:TIGR02917 441 YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQ 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 161 IYSQIqppaSTKDKAPAEAMLRYIAqaeetLKQDKGGGSMVLYSLDQAVRgLGTGMTQPRKWLlmrIEAYLKMGNinaLG 240
Cdd:TIGR02917 521 RFEKV----LTIDPKNLRAILALAG-----LYLRTGNEEEAVAWLEKAAE-LNPQEIEPALAL---AQYYLGKGQ---LK 584
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 241 DAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLRMVQKllrhkdegnaafKARRYR 320
Cdd:TIGR02917 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYA------------VMKNYA 652
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 321 EAIKLYTAGLEIDPTN--------------KDINS--KLLQNRAQAHVNL--------------NEYEQAIEDCTKALEL 370
Cdd:TIGR02917 653 KAITSLKRALELKPDNteaqiglaqlllaaKRTESakKIAKSLQKQHPKAalgfelegdlylrqKDYPAAIQAYRKALKR 732
|
330 340 350
....*....|....*....|....*....|....*.
gi 320038307 371 DPTYSKAKRVrAKAYGGTGDWEKALNELKSIAESNP 406
Cdd:TIGR02917 733 APSSQNAIKL-HRALLASGNTAEAVKTLEAWLKTHP 767
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
48-164 |
5.45e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 61.13 E-value: 5.45e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 48 ADEDRSPTPPPHTVTPPPAPVVDAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALED 127
Cdd:COG5010 31 LAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEY 110
|
90 100 110
....*....|....*....|....*....|....*..
gi 320038307 128 CKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQ 164
Cdd:COG5010 111 YEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
301-424 |
7.17e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.21 E-value: 7.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 301 QKLLRHKDEGNAAFKARRYREAIKLYTAGLEIDPTNKDInsklLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRV 380
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA----FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 320038307 381 RAKAYGGTGDWEKALNELKSIAESNPHERGIQEEIRNAEWELKK 424
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
87-373 |
1.04e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 64.24 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 87 YQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQIq 166
Cdd:COG3914 60 LALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA- 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 167 ppastkdkapaeamlryiaqaeetlkqdkgggsmvlysldqavrglgtgmtqprkwllmrieaylkmgninalgdaqnia 246
Cdd:COG3914 --------------------------------------------------------------------------------
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 247 mslLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLY 326
Cdd:COG3914 139 ---LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNL------------GNALQDLGRLEEAIAAY 203
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 320038307 327 TAGLEIDPTNKDINSKLLqnRAQAHVNLNEYEQAIEDCTKALELDPT 373
Cdd:COG3914 204 RRALELDPDNADAHSNLL--FALRQACDWEVYDRFEELLAALARGPS 248
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
70-165 |
2.74e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 2.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90
....*....|....*.
gi 320038307 150 TALGRPSEALAIYSQI 165
Cdd:COG4783 83 LKAGDYDEALALLEKA 98
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
71-406 |
3.40e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.79 E-value: 3.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 71 AEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALedcKRADELepgnpkimhrLARIyt 150
Cdd:TIGR02917 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE---KHADAL----------LKKA-- 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 151 algrPSEALAIYSQIQPPASTKDKAPAeamlryIAQAEETLKQDKGGGSMVLYsldqavrgLGTGMTQPRKWLLMR--IE 228
Cdd:TIGR02917 258 ----PNSPLAHYLKALVDFQKKNYEDA------RETLQDALKSAPEYLPALLL--------AGASEYQLGNLEQAYqyLN 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 229 AYLKM--GNINALgdaQNIAMSLLRENSQDpdalflrgrlfylqgdneQAIKHFKRALSLDPDSTETVKYLrmvqkllrh 306
Cdd:TIGR02917 320 QILKYapNSHQAR---RLLASIQLRLGRVD------------------EAIATLSPALGLDPDDPAALSLL--------- 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 307 kdeGNAAFKARRYREAIKLYTAGLEIDPTNKDINSKLlqnrAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYG 386
Cdd:TIGR02917 370 ---GEAYLALGDFEKAAEYLAKATELDPENAAARTQL----GISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYL 442
|
330 340
....*....|....*....|
gi 320038307 387 GTGDWEKALNELKSIAESNP 406
Cdd:TIGR02917 443 RSGQFDKALAAAKKLEKKQP 462
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
81-164 |
4.03e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 56.72 E-value: 4.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 81 FFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEdCKRADELEPGNPKIMHRLARIYTALGRPSEALA 160
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....
gi 320038307 161 IYSQ 164
Cdd:COG3063 81 YLER 84
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
310-434 |
6.67e-10 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 59.51 E-value: 6.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 310 GNAAFKARRYREAIKLYTAGLE-IDPTNKDINSKLlqnrAQAHVNLNEYEQAIEDCTKALELDPTY--SKAKRVRAKAYG 386
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALTgIFADDPHILLGL----AQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALE 171
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 320038307 387 GTGDWEKALNELKSIAE--SNPHERgiqeeIRNAEWELKKSQRKDYYKIL 434
Cdd:COG4700 172 ALGDLEAAEAELEALARrySGPEAR-----YRYAKFLARQGRTAEAKELL 216
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
255-406 |
9.10e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.66 E-value: 9.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 255 QDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLRMVQKLLRHKDEGNAAFKARRYREAIKLYTAGLEIDP 334
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP 85
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 320038307 335 TNKDInsklLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNP 406
Cdd:COG5010 86 NNPEL----YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
83-427 |
1.38e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.87 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 83 KAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIY 162
Cdd:TIGR02917 341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADL 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 163 SQiqppASTKDKAPAEAMLRYIAQAEETLKQDKGggsmvlyslDQAVRGLGTGM-TQPRKWLLMRIeAYLKMGNINALGD 241
Cdd:TIGR02917 421 ET----AAQLDPELGRADLLLILSYLRSGQFDKA---------LAAAKKLEKKQpDNASLHNLLGA-IYLGKGDLAKARE 486
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 242 AQNIAMSLlreNSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPdstetvKYLRMVQKLlrhkdegnAAFKARRYR- 320
Cdd:TIGR02917 487 AFEKALSI---EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP------KNLRAILAL--------AGLYLRTGNe 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 321 -EAIKLYTAGLEIDPTNkdINSKLlqNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELK 399
Cdd:TIGR02917 550 eEAVAWLEKAAELNPQE--IEPAL--ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFK 625
|
330 340
....*....|....*....|....*...
gi 320038307 400 SIAESNPHERGIQEEIRNAEWELKKSQR 427
Cdd:TIGR02917 626 KLLALQPDSALALLLLADAYAVMKNYAK 653
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
308-377 |
1.76e-09 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 59.42 E-value: 1.76e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 308 DEGNAAFKARRYREAIKLYTAGLEIDPTNKDinskLLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKA 377
Cdd:PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAE----LYADRAQANIKLGNFTEAVADANKAIELDPSLAKA 72
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
266-372 |
2.07e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 2.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 266 LFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLYTAgLEIDPTNKDInsklLQ 345
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL------------GLLLLEQGRYDEAIALEKA-LKLDPNNAEA----LL 63
|
90 100
....*....|....*....|....*..
gi 320038307 346 NRAQAHVNLNEYEQAIEDCTKALELDP 372
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDP 90
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
70-166 |
3.94e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 59.24 E-value: 3.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:COG3914 145 FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFAL 224
|
90
....*....|....*..
gi 320038307 150 TALGRPSEALAIYSQIQ 166
Cdd:COG3914 225 RQACDWEVYDRFEELLA 241
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
312-406 |
8.69e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 8.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 312 AAFKARRYREAIKLYTAGLEIDPTNKDInsklLQNRAQAHVNLNEYEQAIEdCTKALELDPTYSKAKRVRAKAYGGTGDW 391
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADA----LNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDY 75
|
90
....*....|....*
gi 320038307 392 EKALNELKSIAESNP 406
Cdd:COG3063 76 DEALAYLERALELDP 90
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
111-328 |
1.42e-08 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 56.46 E-value: 1.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 111 RAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQIQppastKDKA-PAEAMLRYIAQAEE 189
Cdd:COG3071 91 RAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALR-----KHKAlSAEEAQALERRAYL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 190 TLKQDKGGGSMVLYSLDQ---------------AVRGL-GTGMTQP-RKWLLMRIEA------YLKMGNINALGDAQNIA 246
Cdd:COG3071 166 GLLRQAARDAEALKALWKalpraerrdpelaaaYARALiALGDHDEaERLLREALKRqwdprlVRLYGRLQGGDPAKQLK 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 247 M--SLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDStETvkyLRMVQKLLRHKDEGNAAFKArrYREAIK 324
Cdd:COG3071 246 RaeKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSA-EA---YAELARLLEQLGDPEEAAEH--YRKALA 319
|
....
gi 320038307 325 LYTA 328
Cdd:COG3071 320 LALG 323
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
76-456 |
1.86e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.40 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 76 LAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRP 155
Cdd:TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDF 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 156 SEALAIYSQIqppastKDKAPAEAMLrYIAQAeeTLKQDKGGGSMVLYSLDQAVRgLGTGMTQPRkwlLMRIEAYLKMGN 235
Cdd:TIGR02917 380 EKAAEYLAKA------TELDPENAAA-RTQLG--ISKLSQGDPSEAIADLETAAQ-LDPELGRAD---LLLILSYLRSGQ 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 236 INAlgdAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYL------------------ 297
Cdd:TIGR02917 447 FDK---ALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLaridiqegnpddaiqrfe 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 298 RMVQKLLRHKD--EGNAAFKARRYR--EAIKLYTAGLEIDPTNKD-----INSKLLQNR-AQAHVNLNEY---------- 357
Cdd:TIGR02917 524 KVLTIDPKNLRaiLALAGLYLRTGNeeEAVAWLEKAAELNPQEIEpalalAQYYLGKGQlKKALAILNEAadaapdspea 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 358 --------------EQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNPHERGIQeeIRNAEWELK 423
Cdd:TIGR02917 604 wlmlgraqlaagdlNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ--IGLAQLLLA 681
|
410 420 430
....*....|....*....|....*....|...
gi 320038307 424 KSQRKDYYKILgvektatdQEIKKAYRKLAIQH 456
Cdd:TIGR02917 682 AKRTESAKKIA--------KSLQKQHPKAALGF 706
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
89-303 |
2.08e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.70 E-value: 2.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 89 RAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQIqpp 168
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERA--- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 169 astkdkapaeamlryiaqaeetlkqdkgggsmvlysldqavrglgtgmtqprkwllmrieaylkmgninalgdaqniams 248
Cdd:COG4235 --------------------------------------------------------------------------------
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 249 lLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLRMVQKL 303
Cdd:COG4235 78 -LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| ZUO1 |
COG5269 |
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ... |
421-494 |
2.30e-08 |
|
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 227594 [Multi-domain] Cd Length: 379 Bit Score: 56.19 E-value: 2.30e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320038307 421 ELKKSQRKDYYKILGVEK---TATDQEIKKAYRKLAIQHHPDKNRDSDK--SDELFKEIGEAYEVLSDPQKRASYDNGD 494
Cdd:COG5269 36 DFKNWKKVDLYALLGLSKyrtKAIPPQILKAHKKKVYKYHPDKTAAGGNkgCDEFFKLIQKAREVLGDRKLRLQYDSND 114
|
|
| PTZ00341 |
PTZ00341 |
Ring-infected erythrocyte surface antigen; Provisional |
397-491 |
1.33e-07 |
|
Ring-infected erythrocyte surface antigen; Provisional
Pssm-ID: 173534 [Multi-domain] Cd Length: 1136 Bit Score: 54.79 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 397 ELKSIAESNPHERG--IQEEIRNAEWELKKSQRKD---------YYKILGVEKTATDQEIKKAYRKLAIQHHPDKnRDSD 465
Cdd:PTZ00341 531 EEPTIAEEHVEEEIstAEEHIEEPASDVQQDSEAAptieipdtlFYDILGVGVNADMKEISERYFKLAENYYPPK-RSGN 609
|
90 100
....*....|....*....|....*.
gi 320038307 466 KSDELFKEIGEAYEVLSDPQKRASYD 491
Cdd:PTZ00341 610 EGFHKFKKINEAYQILGDIDKKKMYN 635
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
229-334 |
1.41e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 229 AYLKMGNINAlgdAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAIKhFKRALSLDPDSTETVKYLrmvqkllrhkd 308
Cdd:COG3063 1 LYLKLGDLEE---AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNL----------- 65
|
90 100
....*....|....*....|....*.
gi 320038307 309 eGNAAFKARRYREAIKLYTAGLEIDP 334
Cdd:COG3063 66 -AELLLELGDYDEALAYLERALELDP 90
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
265-384 |
2.07e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 265 RLFYLQGDNEQAIKHFKRALSLDPDStetvKYLRMVQKLLrhkdeGNAAFKARRYREAIKLYTAGLEIDPTNKDInSKLL 344
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNS----PLAPDALYWL-----GEAYYALGDYDEAAEAFEKLLKRYPDSPKA-PDAL 70
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 320038307 345 QNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKA 384
Cdd:COG1729 71 LKLGLSYLELGDYDKARATLEELIKKYPDSEAAKEARARL 110
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
70-382 |
2.29e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 50.47 E-value: 2.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTylSNRAAAYISANRYNEALEDCKRAdeLEPGNPkimhRLARIY 149
Cdd:PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN--RDKWESLLKVNRYWLLIQQGDAA--LKANNL----AQAERL 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 150 TALGR---PSEALAIYSQIQPPASTKDKAPAEamlRYIAQAeetLKQDKGGGSmvlysldqAVRGLGTGMTQ--PRKWLl 224
Cdd:PRK11447 374 YQQARqvdNTDSYAVLGLGDVAMARKDYAAAE---RYYQQA---LRMDPGNTN--------AVRGLANLYRQqsPEKAL- 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 225 mrieAYlkmgnINALGDAQNIAMSLLrENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTeTVKYlRMVQKLL 304
Cdd:PRK11447 439 ----AF-----IASLSASQRRSIDDI-ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV-WLTY-RLAQDLR 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 305 R--HKDEGNAAFK---ARRYREAIKLYTAGLEIDPTNKDinskllqnrAQAHVNLNEYEQA-----IEDCTKALELDPTY 374
Cdd:PRK11447 507 QagQRSQADALMRrlaQQKPNDPEQVYAYGLYLSGSDRD---------RAALAHLNTLPRAqwnsnIQELAQRLQSDQVL 577
|
....*...
gi 320038307 375 SKAKRVRA 382
Cdd:PRK11447 578 ETANRLRD 585
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
80-165 |
2.41e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.52 E-value: 2.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 80 KFFKAGNYQRAILEYTKAVEAQPISPTY---LSNRAAAYISANRYNEALEDCKRADELEPGNPKI---MHRLARIYTALG 153
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdaLLKLGLSYLELG 81
|
90
....*....|..
gi 320038307 154 RPSEALAIYSQI 165
Cdd:COG1729 82 DYDKARATLEEL 93
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
341-374 |
2.80e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.95 E-value: 2.80e-06
10 20 30
....*....|....*....|....*....|....
gi 320038307 341 SKLLQNRAQAHVNLNEYEQAIEDCTKALELDPTY 374
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
257-289 |
6.84e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 42.79 E-value: 6.84e-06
10 20 30
....*....|....*....|....*....|...
gi 320038307 257 PDALFLRGRLFYLQGDNEQAIKHFKRALSLDPD 289
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
223-373 |
8.00e-06 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 48.01 E-value: 8.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 223 LLMRIEAYLKMGNinaLGDAQNIAMSLLRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTeTVKYLRMVQk 302
Cdd:cd24142 3 LLEKAEELLDQGN---FELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGG-YEKYLYLGQ- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 303 LLrhkdEGnaafkarryREAIKLYTAGLEI----------DPTNKDINSKLLQNR-AQAHVNLNE-Y----------EQA 360
Cdd:cd24142 78 LS----GG---------EEALQYYEKGIEIleeelqalqaASAEAEEEAEELKRKlSSALCALAEiYmtdlcdepdaEQR 144
|
170
....*....|....
gi 320038307 361 IEDC-TKALELDPT 373
Cdd:cd24142 145 CEELiTKALELDPT 158
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
173-334 |
9.94e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 9.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 173 DKAPAEAMLRYIAQAEETLKQDKGGGSMVLYSLDQAVRGLGTGMTQPRKWLLMRIEAYLKMGNINAlgdAQNIAMSLLRE 252
Cdd:COG5010 7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEE---SLALLEQALQL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 253 NSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLrmvqkllrhkdeGNAAFKARRYREAIKLYTAGLEI 332
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNL------------AALLLSLGQDDEAKAALQRALGT 151
|
..
gi 320038307 333 DP 334
Cdd:COG5010 152 SP 153
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
341-374 |
1.02e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.43 E-value: 1.02e-05
10 20 30
....*....|....*....|....*....|....
gi 320038307 341 SKLLQNRAQAHVNLNEYEQAIEDCTKALELDPTY 374
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
257-289 |
1.09e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 42.43 E-value: 1.09e-05
10 20 30
....*....|....*....|....*....|...
gi 320038307 257 PDALFLRGRLFYLQGDNEQAIKHFKRALSLDPD 289
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
86-136 |
1.43e-05 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 47.47 E-value: 1.43e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 320038307 86 NYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEP 136
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP 67
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
70-138 |
1.56e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 1.56e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGN 138
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
118-180 |
2.29e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 42.19 E-value: 2.29e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 320038307 118 ANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQIqPPASTKDKAPAEAM 180
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAAL-PAADPDDPRYAALL 62
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
70-183 |
2.35e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 47.39 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNraAAYISANRYN-EALEDCKRADELEPGNPKIMHRLARI 148
Cdd:TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNN--LAWLYLELKDpRALEYAERALKLAPNIPAILDTLGWL 846
|
90 100 110
....*....|....*....|....*....|....*
gi 320038307 149 YTALGRPSEALAIYSQiqppAStkDKAPAEAMLRY 183
Cdd:TIGR02917 847 LVEKGEADRALPLLRK----AV--NIAPEAAAIRY 875
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
257-289 |
3.42e-05 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.97 E-value: 3.42e-05
10 20 30
....*....|....*....|....*....|...
gi 320038307 257 PDALFLRGRLFYLQGDNEQAIKHFKRALSLDPD 289
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
78-182 |
9.31e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.75 E-value: 9.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 78 GNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSE 157
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKA 193
|
90 100
....*....|....*....|....*.
gi 320038307 158 ALAIYSQIQPPA-STKDKAPAEAMLR 182
Cdd:COG4785 194 LALLLEDWATAYlLQGDTEEARELFK 219
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
341-408 |
1.13e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 44.16 E-value: 1.13e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 320038307 341 SKLLQnRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNPHE 408
Cdd:cd24142 1 DELLE-KAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
252-327 |
1.42e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.52 E-value: 1.42e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 320038307 252 ENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVKYLRMVqkllrhkdeGNAAFKARRYREAIKLYT 327
Cdd:COG1729 25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKL---------GLSYLELGDYDKARATLE 91
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
312-406 |
1.91e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.13 E-value: 1.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 312 AAFKARRYREAIKLYTAGLEIDPTNKdINSKLLQNRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRV---RAKAYGGT 388
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSP-LAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDAllkLGLSYLEL 80
|
90
....*....|....*...
gi 320038307 389 GDWEKALNELKSIAESNP 406
Cdd:COG1729 81 GDYDKARATLEELIKKYP 98
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
318-376 |
2.25e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 43.39 E-value: 2.25e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 320038307 318 RYREAIKLYTAGLEIDPTNkdinSKLLQNRAQAHVNLNEYEQAIEDCTKALELDP--TYSK 376
Cdd:cd24142 15 NFELALKFLQRALELEPNN----VEALELLGEILLELGDVEEAREVLLRAIELDPdgGYEK 71
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
77-193 |
2.59e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.95 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 77 AGNKFFKAGNYQRAILEYTKAVEaqpISPTYlSNR---AAAYISANRYNEAL---EDCkrADELEPGNPKIMHRLARIYT 150
Cdd:COG4700 62 VQRAARNALDPGRELRELEKALE---FADTV-QNRvrlADALLELGRYDEAIelyEEA--LTGIFADDPHILLGLAQALF 135
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 320038307 151 ALGRPSEALAIYSQIQppASTKDKAPAEAMLRY---------IAQAEETLKQ 193
Cdd:COG4700 136 ELGRYAEALETLEKLI--AKNPDFKSSDAHLLYaralealgdLEAAEAELEA 185
|
|
| PHA03102 |
PHA03102 |
Small T antigen; Reviewed |
432-501 |
4.76e-04 |
|
Small T antigen; Reviewed
Pssm-ID: 222986 [Multi-domain] Cd Length: 153 Bit Score: 40.81 E-value: 4.76e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 320038307 432 KILGVEKTATDQE--IKKAYRKLAIQHHPDKNRDSDKSdelfKEIGEAYEVLSDPQKRASYDNGDDLLDPSD 501
Cdd:PHA03102 9 DLLGLPRSAWGNLplMRKAYLRKCLEFHPDKGGDEEKM----KELNTLYKKFRESVKSLRDLDGEEDSSSEE 76
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
114-160 |
5.23e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 5.23e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 320038307 114 AYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALA 160
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA 47
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
264-290 |
6.68e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.45 E-value: 6.68e-04
10 20
....*....|....*....|....*..
gi 320038307 264 GRLFYLQGDNEQAIKHFKRALSLDPDS 290
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDN 27
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
342-373 |
7.55e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.12 E-value: 7.55e-04
10 20 30
....*....|....*....|....*....|..
gi 320038307 342 KLLQNRAQAHVNLNEYEQAIEDCTKALELDPT 373
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
316-383 |
8.77e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 8.77e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 320038307 316 ARRYREAIKLYTAGLEIDPTNKDINSKLlqnrAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAK 383
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGL----AEALLALGRLDEAEALLAALPAADPDDPRYAALLAK 64
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
70-164 |
9.48e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 9.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 70 DAEACKLAGNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIY 149
Cdd:COG5010 19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98
|
90
....*....|....*
gi 320038307 150 TALGRPSEALAIYSQ 164
Cdd:COG5010 99 SRSGDKDEAKEYYEK 113
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
347-415 |
1.05e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.25 E-value: 1.05e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320038307 347 RAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNPHERGIQEEI 415
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL 82
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
350-424 |
1.10e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 1.10e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 350 AHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNPHERGIQEEIRNAEWELKK 424
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQ 137
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
308-375 |
1.76e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.93 E-value: 1.76e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 320038307 308 DEGNAAFKARRYREAIKLYTAGLEIDPTNKDINSKLLqNRAQAHVNLNEYEQAIEDCTKALELDPTYS 375
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALARFPESPDAAAALL-LLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
108-292 |
1.89e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.22 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 108 LSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQI--QPPASTkDKAPAEAMlrYIA 185
Cdd:PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLaqQKPNDP-EQVYAYGL--YLS 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 186 QAEetlkQDkgggsmvlyslDQAVRGLGtgmTQPR-KW------LLMRIEAYLKMGNINALGDA--QNIAMSLLRENSQD 256
Cdd:PRK11447 541 GSD----RD-----------RAALAHLN---TLPRaQWnsniqeLAQRLQSDQVLETANRLRDSgkEAEAEALLRQQPPS 602
|
170 180 190
....*....|....*....|....*....|....*.
gi 320038307 257 PDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTE 292
Cdd:PRK11447 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638
|
|
| BTAD |
smart01043 |
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ... |
111-162 |
2.02e-03 |
|
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.
Pssm-ID: 198111 [Multi-domain] Cd Length: 145 Bit Score: 38.82 E-value: 2.02e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 320038307 111 RAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIY 162
Cdd:smart01043 67 LAEALLALGRHEEALALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAY 118
|
|
| TPR_6 |
pfam13174 |
Tetratricopeptide repeat; |
258-290 |
2.03e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463800 [Multi-domain] Cd Length: 33 Bit Score: 35.91 E-value: 2.03e-03
10 20 30
....*....|....*....|....*....|...
gi 320038307 258 DALFLRGRLFYLQGDNEQAIKHFKRALSLDPDS 290
Cdd:pfam13174 1 DALLKLALAYLELGDTDEAKEALERLIKKYPDS 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
108-164 |
2.07e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 36.98 E-value: 2.07e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 108 LSNRAAAYISANRYNEALEDCKRA-----DELEPGNPKI---MHRLARIYTALGRPSEALAIYSQ 164
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKAleiarRLLGPDHPLTattLLNLGRLYLELGRYEEALELLER 70
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
83-164 |
2.13e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.90 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 83 KAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIY 162
Cdd:COG4785 51 AALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDF 130
|
..
gi 320038307 163 SQ 164
Cdd:COG4785 131 DR 132
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
108-138 |
2.58e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.47 E-value: 2.58e-03
10 20 30
....*....|....*....|....*....|.
gi 320038307 108 LSNRAAAYISANRYNEALEDCKRADELEPGN 138
Cdd:pfam00515 4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
342-372 |
2.68e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 35.45 E-value: 2.68e-03
10 20 30
....*....|....*....|....*....|.
gi 320038307 342 KLLQNRAQAHVNLNEYEQAIEDCTKALELDP 372
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
78-136 |
2.86e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.79 E-value: 2.86e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 320038307 78 GNKFFKAGNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEP 136
Cdd:COG5010 95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
110-286 |
3.17e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.92 E-value: 3.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 110 NRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQ-IQP-PASTKDK--------APAEA 179
Cdd:cd24142 5 EKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRaIELdPDGGYEKylylgqlsGGEEA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 180 mLRYIAQA----EETLKQDKGGGSMVLYSLDQAVRGLGTG--------MTQprkwLLM------RIEAYLKMgninalgd 241
Cdd:cd24142 85 -LQYYEKGieilEEELQALQAASAEAEEEAEELKRKLSSAlcalaeiyMTD----LCDepdaeqRCEELITK-------- 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 320038307 242 aqniAMSLlreNSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSL 286
Cdd:cd24142 152 ----ALEL---DPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
259-429 |
4.29e-03 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 39.51 E-value: 4.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 259 ALFLRGRLFYLQGDNEQAIKHFKRALSLDPdsTETVKYLRMVQkllrhkdegnAAFKARRYREAIKLYTAGLEIDPTNKD 338
Cdd:COG3071 18 AALLEGLLALAEGRYARAEKLLSKAAEHSE--APLLAYLLAAR----------AAQALGDYERRDEYLAQALELAPEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 339 inSKLLQnRAQAHVNLNEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESN-PHERGIQEEIRN 417
Cdd:COG3071 86 --AVLLT-RAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKaLSAEEAQALERR 162
|
170
....*....|..
gi 320038307 418 AEWELKKSQRKD 429
Cdd:COG3071 163 AYLGLLRQAARD 174
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
250-289 |
4.62e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.69 E-value: 4.62e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 320038307 250 LRENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPD 289
Cdd:COG3063 52 LKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
85-193 |
5.17e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 39.68 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 85 GNYQRAILEYTKAVEAQPISPTYLSNRAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIYSQ 164
Cdd:PRK11447 617 GDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 320038307 165 IQPPASTKDKAPAEAMLRYIA-----------QAEETLKQ 193
Cdd:PRK11447 697 LIPQAKSQPPSMESALVLRDAarfeaqtgqpqQALETYKD 736
|
|
| DnrI |
COG3629 |
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain ... |
111-162 |
5.22e-03 |
|
DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain [Transcription];
Pssm-ID: 442847 [Multi-domain] Cd Length: 244 Bit Score: 38.67 E-value: 5.22e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 320038307 111 RAAAYISANRYNEALEDCKRADELEPGNPKIMHRLARIYTALGRPSEALAIY 162
Cdd:COG3629 163 LAEALLALGRHAEALAELRRLVAAHPLRERLHRLLMRALYRAGRRAEALAAY 214
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
130-292 |
5.77e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 38.88 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 130 RADELEPGNPKImhRLARIYTALGRPSEALAIYSQiqppasTKDKAPAEAML--RYIAQAEETLKQDKGG--GSMVLYSL 205
Cdd:pfam13429 1 RLARFDPPNEAY--ALATLLYGQGDPRKALAALKE------GAQTAPASDTEfwRTLADLAWALQQDDDArrAYRQLLAS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 320038307 206 DQAVRGLGTGMTQ------PRKWLLMRIEAYLKMGNI----------NALGDAQNIAmSLLRENSQDPDA------LFLR 263
Cdd:pfam13429 73 GKARADDYERLILllydarPKDAARLSELGWRRFRSPrhlysalylyERAGDYDRLA-RLLASLEELPAAeqspafWLAR 151
|
170 180
....*....|....*....|....*....
gi 320038307 264 GRLFYLQGDNEQAIKHFKRALSLDPDSTE 292
Cdd:pfam13429 152 AEYYRQTGEPDAALRDYRRALALAPASTE 180
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
259-332 |
7.13e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 35.44 E-value: 7.13e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 320038307 259 ALFLRGRLFYLQGDNEQAIKHFKRALSL-----DPDSTETVKYLRMVqkllrhkdeGNAAFKARRYREAIKLYTAGLEI 332
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllGPDHPLTATTLLNL---------GRLYLELGRYEEALELLERALAL 74
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
355-406 |
7.35e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.25 E-value: 7.35e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 320038307 355 NEYEQAIEDCTKALELDPTYSKAKRVRAKAYGGTGDWEKALNELKSIAESNP 406
Cdd:pfam14559 2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADP 53
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
228-295 |
8.03e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 36.51 E-value: 8.03e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 320038307 228 EAYLKMGNIN-ALGDAQNIAMSLLR------ENSQDPDALFLRGRLFYLQGDNEQAIKHFKRALSLDPDSTETVK 295
Cdd:COG1729 31 DALYWLGEAYyALGDYDEAAEAFEKllkrypDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAAKE 105
|
|
| |
