|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-306 |
3.34e-92 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 277.09 E-value: 3.34e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLMLNNNMNIqineSFT 80
Cdd:MTH00160 14 LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFN----NIS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 81 SMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKNLLLISVILSVIVGAIGGLNQTSLRK 160
Cdd:MTH00160 90 SMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 161 LMAFSSINHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMNLLSLGGLPPF 240
Cdd:MTH00160 170 ILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPF 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 317119878 241 LGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFMLNYFENNWIINTQFNNFYINL 306
Cdd:MTH00160 250 LGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL 315
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
11-264 |
9.35e-34 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 124.73 E-value: 9.35e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 11 SNSWLGAWMGLEINLLSFIPLLSDN-NNLMSTEASLKYFLTQALASTVLLFSVI-------------LLMLNNNMNIQIN 76
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISlmynytgtlsfdeLSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 77 ESFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMN-ALMLMTWQKIAPLMLI--------SYLNIKNLLLISVILSVIV 147
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 148 GAIGGLNQTSLRKLMAFSSINHLGWMLSAISI----SESVWMIYFMFYSFLSLILTFMFNIF-----KLFHFNQLFSWFM 218
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 317119878 219 NKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMV 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
1-285 |
2.91e-26 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 107.51 E-value: 2.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQALASTVLLF--------------SVILL 65
Cdd:COG1007 111 ATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIAA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 66 MLNNNMNIQINESFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIA----------PLMLISYLNIKN 135
Cdd:COG1007 191 ALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGLAADWQL 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 136 LLLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAI----SISESVWMIYFMFYSFLSL----ILTFM----FN 203
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLgafaVILLLsrkgGE 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 204 IFKLFHFNQLFSwfmNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAA 283
Cdd:COG1007 351 AEEIEDLAGLAR---RSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAM 427
|
..
gi 317119878 284 FM 285
Cdd:COG1007 428 YF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
2-285 |
1.38e-24 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 102.72 E-value: 1.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 2 IIGTMITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQALASTVLLF--------------SVILLM 66
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 67 LNNNMNIQINESFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLI----------SYLNIKNL 136
Cdd:TIGR01770 192 LSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfgFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 137 LLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAISISESVWMIYFMFY----------SFLSLILTFMFNIFK 206
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYifiyalmslgAFGVLSLLRSYKDEW 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 317119878 207 LFHFNQLFSWFMNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFM 285
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYF 430
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-306 |
3.34e-92 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 277.09 E-value: 3.34e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLMLNNNMNIqineSFT 80
Cdd:MTH00160 14 LIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLNLMLFN----NIS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 81 SMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKNLLLISVILSVIVGAIGGLNQTSLRK 160
Cdd:MTH00160 90 SMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIIILSAIIGAIGGLNQTSLRK 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 161 LMAFSSINHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMNLLSLGGLPPF 240
Cdd:MTH00160 170 ILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLFLNLLSLGGLPPF 249
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 317119878 241 LGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFMLNYFENNWIINTQFNNFYINL 306
Cdd:MTH00160 250 LGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLIL 315
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-285 |
3.18e-68 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 215.84 E-value: 3.18e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLMLNN-NMNI-QINES 78
Cdd:MTH00112 13 LILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTgQWDItQLTNP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 79 FTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAP---LMLISYLNIKNLLLISVILSVIVGAIGGLNQ 155
Cdd:MTH00112 93 TSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPltlLLMTSNSLNPTLLLTLAILSTLIGGWGGLNQ 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 156 TSLRKLMAFSSINHLGWMLSAISISESVWMIYFMFYS------FLSLILTFMFNIFKLfhfnqLFSWFMNkKILKFTLFM 229
Cdd:MTH00112 173 TQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYIlmttpmFLTLNTTSTKTLKDM-----MTSWTKS-PTLNTTLML 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 317119878 230 NLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFM 285
Cdd:MTH00112 247 TLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTI 302
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-282 |
9.05e-65 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 207.01 E-value: 9.05e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVI--LLMLNNNMNIQINES 78
Cdd:MTH00105 13 LFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIinLMYSGQWTITKLTNP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 79 FTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLI----SYLNIkNLLLISVILSVIVGAIGGLN 154
Cdd:MTH00105 93 TASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILyqisPSINP-NLLLTLAILSILIGGWGGLN 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 155 QTSLRKLMAFSSINHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMNLLSL 234
Cdd:MTH00105 172 QTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLLSL 251
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 317119878 235 GGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYA 282
Cdd:MTH00105 252 GGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYS 299
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
3-282 |
1.33e-64 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 206.58 E-value: 1.33e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 3 IGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLF-SVILLMLNNNMNI-QINESFT 80
Cdd:MTH00135 15 LGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFaSTTNAWLTGQWDIqQMSHPLP 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 81 SMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKN--LLLISVILSVIVGAIGGLNQTSL 158
Cdd:MTH00135 95 TTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNptLLITLGLTSTLVGGWGGLNQTQL 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 159 RKLMAFSSINHLGWMLSAISISESVWMIYFMFYsflsLILTF-MFNIFKLFH---FNQLFSWFMNKKILKFTLFMNLLSL 234
Cdd:MTH00135 175 RKILAYSSIAHLGWMILVLQFSPSLTLLALLTY----IIMTSsAFLTFKLNSstkINTLATSWTKAPALTALTPLILLSL 250
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 317119878 235 GGLPPFLGFLPKWIVIQQLTNcsQYLQLM--VMMMMTLITLFFYLRICYA 282
Cdd:MTH00135 251 GGLPPLTGFMPKWLILQELTK--QDLPLTatLAALSALLSLYFYLRLSYA 298
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
3-282 |
7.74e-62 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 199.76 E-value: 7.74e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 3 IGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLMLNNN----MNIQINes 78
Cdd:MTH00070 15 LGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGewtiMNMQTP-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 79 FTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLML---ISYLNIKNLLLISVILSVIVGAIGGLNQ 155
Cdd:MTH00070 93 LPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALliqISHLLNSNLLIIMGLLSTLIGGWGGLNQ 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 156 TSLRKLMAFSSINHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMNLLSLG 235
Cdd:MTH00070 173 TQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLTLLSLG 252
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 317119878 236 GLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYA 282
Cdd:MTH00070 253 GLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYA 299
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
2-301 |
3.06e-59 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 192.84 E-value: 3.06e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 2 IIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVIL-LMLNNNMNI-QINESF 79
Cdd:MTH00041 14 ILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIqAWLSGSWSInGPLNTL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 80 TSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLN---IKNLLLISVILSVIVGAIGGLNQT 156
Cdd:MTH00041 94 SSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISnllNSNILILCGILSVLVGGWGGLNQT 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 157 SLRKLMAFSSINHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMNLLSLGG 236
Cdd:MTH00041 174 QTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFILSILSLGG 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 317119878 237 LPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFMLNYFENNWIINTQFNN 301
Cdd:MTH00041 254 LPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNS 318
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
1-292 |
2.62e-52 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 174.30 E-value: 2.62e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLMLNNNMniqineSFT 80
Cdd:MTH00144 13 MVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFS------WFS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 81 SMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLN----IKNLLLISVILSVIVGAIGGLNQT 156
Cdd:MTH00144 87 MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLdlywLAYLLCVISVLSALVGSIGGLNQT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 157 SLRKLMAFSSINHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMnLLSLGG 236
Cdd:MTH00144 167 QVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISL-LLSLGG 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 317119878 237 LPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFMLNYFENN 292
Cdd:MTH00144 246 LPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKK 301
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-286 |
1.01e-51 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 173.04 E-value: 1.01e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLMLNNNMNIqineSFT 80
Cdd:MTH00011 15 MTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLLK----NIT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 81 SMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYL---NIKNLLLISVILSVIVGAIGGLNQTS 157
Cdd:MTH00011 91 ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtshNILPMMTSMAAMSALAGGLGGMNQTQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 158 LRKLMAFSSINHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMNLLSLGGL 237
Cdd:MTH00011 171 LRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGL 250
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 317119878 238 PPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFML 286
Cdd:MTH00011 251 PPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYL 299
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-286 |
1.24e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 173.23 E-value: 1.24e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLMLNNNMN--IQINES 78
Cdd:MTH00200 13 LGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWgiSEMLGP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 79 FTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLML---ISYLNIKNLLLISVILSVIVGAIGGLNQ 155
Cdd:MTH00200 93 LSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALliqLAPALNSNILLLLGLLSVLVGGWGGLNQ 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 156 TSLRKLMAFSSINHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMNLLSLG 235
Cdd:MTH00200 173 TQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLTLLSLG 252
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 317119878 236 GLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFML 286
Cdd:MTH00200 253 GLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLT 303
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
1-292 |
2.82e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 155.99 E-value: 2.82e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLMLNNNMniqinESFT 80
Cdd:MTH00197 7 IFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL-----SLLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 81 SMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYL-NIKNLLLISVILSVIVGAIGGLNQTSLR 159
Cdd:MTH00197 82 VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNsSSFMGLLICSVLSSLIGGIGGMNQSNIR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 160 KLMAFSSINHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMNLLSLGGLPP 239
Cdd:MTH00197 162 QLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLGGLPP 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 317119878 240 FLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFMLNYFENN 292
Cdd:MTH00197 242 LSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMIN 294
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
11-264 |
9.35e-34 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 124.73 E-value: 9.35e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 11 SNSWLGAWMGLEINLLSFIPLLSDN-NNLMSTEASLKYFLTQALASTVLLFSVI-------------LLMLNNNMNIQIN 76
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISlmynytgtlsfdeLSKALTGGLNSSG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 77 ESFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMN-ALMLMTWQKIAPLMLI--------SYLNIKNLLLISVILSVIV 147
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVsALLAATLVKAGGYGLIrrsllylpSSPFIQQILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 148 GAIGGLNQTSLRKLMAFSSINHLGWMLSAISI----SESVWMIYFMFYSFLSLILTFMFNIF-----KLFHFNQLFSWFM 218
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFLCAGSViyrrvHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 317119878 219 NKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMV 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
2-279 |
4.19e-32 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 122.06 E-value: 4.19e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 2 IIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDN-NNLMSTEASLKYFLTQALASTVLLF--------------SVILLM 66
Cdd:MTH00196 3 ALGILCLISSSNWLSVYLAIELQTLSLFILIAQNrGSGYSAEAGLKYFVLGALSSGLFLFgcallcgttgglhlSYINLV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 67 LNNNMNI-QINESFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPL-MLISYLNIKNLLLISVILS 144
Cdd:MTH00196 83 LNSGQSFsSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFsILVSIGLNVNILLIGGLFS 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 145 VIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAISI----SESVWMIYFMFYSFLSL-----ILTFMFNIFKLFHFNQLfs 215
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSIcvfsiILALNVYKNLIIEFSGL-- 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 317119878 216 wFMNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRI 279
Cdd:MTH00196 241 -SRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
2-279 |
8.48e-29 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 114.73 E-value: 8.48e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 2 IIGTMITVTSNSWLGAWMGLEINLLS-FIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLM-LNNNMNIQINESF 79
Cdd:MTH00199 107 ALGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYgLTGETSIQGINSI 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 80 TS-----MMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPL-MLISYLNIKNLLLISVILSVIVGAIGGL 153
Cdd:MTH00199 187 LTgdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFsILVQIGPVTNVVLICAVLSIIYGAIGAL 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 154 NQTSLRKLMAFSSINHLGWMLSAISIS--ES-----VWMIYFMFYSFLSLILTFMFNIFKLFhFNQLFSWFMNKKILKFT 226
Cdd:MTH00199 267 NQTKIKRLLAYSGIGHMGFILFGVAIGsfESiqaslIYMIIYVIMSICSFSIILSLKLTKGL-IVEVSGLSRKNPVIALT 345
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 317119878 227 LFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRI 279
Cdd:MTH00199 346 LALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
1-279 |
2.02e-27 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 111.07 E-value: 2.02e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEI-NLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLL--------------FSVILL 65
Cdd:PRK05777 112 ALLGMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 66 MLNNNMNIQINESFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIA---PLMLISYL-------NIKN 135
Cdd:PRK05777 192 ALADGSGNSLLLLFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaVLLRLLVVafgglseDWQQ 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 136 LLLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAI----SISESVWMIYFMFYSFLSL----ILTFMFNifKL 207
Cdd:PRK05777 272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTLgafgVISLLRR--KG 349
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 317119878 208 FHFNQLFSW---FMNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRI 279
Cdd:PRK05777 350 GEAESISDFaglSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
1-285 |
2.91e-26 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 107.51 E-value: 2.91e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQALASTVLLF--------------SVILL 65
Cdd:COG1007 111 ATLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygatgslnlAGIAA 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 66 MLNNNMNIQINESFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIA----------PLMLISYLNIKN 135
Cdd:COG1007 191 ALAAGGANSPLLLLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAafaallrllvEAFPGLAADWQL 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 136 LLLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAI----SISESVWMIYFMFYSFLSL----ILTFM----FN 203
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLgafaVILLLsrkgGE 350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 204 IFKLFHFNQLFSwfmNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAA 283
Cdd:COG1007 351 AEEIEDLAGLAR---RSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAM 427
|
..
gi 317119878 284 FM 285
Cdd:COG1007 428 YF 429
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
2-285 |
1.38e-24 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 102.72 E-value: 1.38e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 2 IIGTMITVTSNSWLGAWMGLEINLLSFIPLLS-DNNNLMSTEASLKYFLTQALASTVLLF--------------SVILLM 66
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgslnfEDLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 67 LNNNMNIQINESFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLI----------SYLNIKNL 136
Cdd:TIGR01770 192 LSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFlrlflyilfgFSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 137 LLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAISISESVWMIYFMFY----------SFLSLILTFMFNIFK 206
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVLFYifiyalmslgAFGVLSLLRSYKDEW 351
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 317119878 207 LFHFNQLFSWFMNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFM 285
Cdd:TIGR01770 352 IEYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMYF 430
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
3-279 |
8.83e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 83.37 E-value: 8.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 3 IGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMST---------EASLKYFLTQALASTVLLFS------------ 61
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGcalyfgftgneg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 62 ---VILLMLNNNMNIQINE-SFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKNLL 137
Cdd:MTH00198 279 mlgTILSATLETTNIELRQgSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 138 LISV-ILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAISI-------SESVWMIYFMFYSFLSLILTFMFNIFKL-- 207
Cdd:MTH00198 359 LLSVaIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAgtyeslqASWTYAVTYLVSALASFTVICTLEEFGTrt 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 208 ---------FHFNQLFSWFMNKKILK-------FTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCS-------QYLQLMV 264
Cdd:MTH00198 439 ptsrqrdgsFGNYNLVRRLVDLTILSrgqpyiaFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAfssslsiYYLVALF 518
|
330
....*....|....*
gi 317119878 265 MMMMTLITLFFYLRI 279
Cdd:MTH00198 519 AIICTCISAFYYIRI 533
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
1-283 |
1.50e-14 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 73.64 E-value: 1.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNSWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILL-----------MLNN 69
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLygatgtlnmadLAAR 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 70 NMNIQINESFTSMMMMST-LLLKSGAAPFHFWFPN-----------MMEGLTWMNAL--MLMTWQKIAPLMLISYLNIkn 135
Cdd:COG0651 196 LAELDPGLLLAAFALLLVgFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-- 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 136 LLLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAISISESV---WMIYFMFYSFLSLILTFM-----FNIFKL 207
Cdd:COG0651 274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNHALAKALLFLaagaiERATGT 353
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 317119878 208 FHFNQLFSWFMNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAA 283
Cdd:COG0651 354 RDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
21-285 |
7.45e-14 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 71.45 E-value: 7.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 21 LEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILL-MLNNNMNIQI--------NESFTSM-MMMSTLLL 90
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLyGVTGTLNMADlagalaenPTVVTAFgFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 91 KSGAAPFHFWFPNMMEGLTWMNALML-MTWQKIAPLMLI------------SYLNIKNLLLISVILSVIVGAIGGLNQTS 157
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLsGLVTKVAVYALIriyftvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQDD 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 158 LRKLMAFSSINHLGWMLSAISISESVWMIYFMFYSF---LSLILTFM--------FNIFKLFHFNQLFSwfmNKKILKFT 226
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLhhaLMKGALFLaagaievtYGTRRLSELSGLGR---RMPLTAAA 371
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 317119878 227 LFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFM 285
Cdd:PRK08375 372 FAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFF 430
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
40-279 |
8.58e-11 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 62.33 E-value: 8.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 40 STEASLKYFLTQALASTVLLFSVILL------------MLNNNMNIQINESFTSMM----MMSTLLLKSGAAPFHFWFPN 103
Cdd:CHL00049 160 SNEATMKYLLMGGASSSILVYGFSWLyglsggeielqeIVNGLINTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPD 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 104 MMEGLTWMNALMLMTWQKIAPLML-ISYLNI---------KNLLLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWM 173
Cdd:CHL00049 240 VYEGSPTPVVAFLSVTSKVAASALaTRIFDIpfyfssnewHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYV 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 174 LSAISISESVW-----MIYFMFYSFLSLILTFMFNIFKLF----HFNQLFSWFMNKKILKFTLFMNLLSLGGLPPFLGFL 244
Cdd:CHL00049 320 IIGIIVGDSNDgyasmITYMLFYIFMNLGTFACIVLFGLRtgtdNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGFF 399
|
250 260 270
....*....|....*....|....*....|....*
gi 317119878 245 PKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRI 279
Cdd:CHL00049 400 GKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
42-285 |
1.09e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 58.96 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 42 EASLKYFLTQALASTVLLFSVILL--------MLNNNMNIQINESFTSMMMMS----TLLLKSGAAPFHFWFPNMM-EGL 108
Cdd:PRK08376 172 EAGIKYMFVGSLASSMVLLGIALLygqygtlnMAYLAVKMSENPTVVAKIALAlfiaGLAMKSGAVPVHMWLPDAYpAAP 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 109 TWMNALMLMTWQ-KIAPLMLISY------LNIKNLLLISVI---LSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAIS 178
Cdd:PRK08376 252 SSISAMLLVIKQaGLYALARVLFsiygpaINLATVGWVIIIlgcLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 179 ISESVW--------------------MIYFMFYSFLSLILTFMFNIFKLFHFNQLFSWFMNKKILKFTLFMNLLSLGGLP 238
Cdd:PRK08376 332 VGLAALgdpamasygeialaggiyhiVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLP 411
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 317119878 239 PFLGFLPKWIVIQQLTNCSQYLQLmVMMMMTLITLFFYLRICYAAFM 285
Cdd:PRK08376 412 PFNGFASKWLIYESSALFNPILGV-IAMIGSVLTLASFVKVFHTAFF 457
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
82-275 |
1.29e-09 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 58.61 E-value: 1.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 82 MMMMSTLLLKSGAAPFHFWFPNM-MEGLTWMNALMLMTWQKIAPLMLISYLNI----------KNLLLISVILSVIVGAI 150
Cdd:PRK08676 210 LFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSALlrqsgaaeqfSNVLIGLGIFSIAVAAF 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 151 GGLNQTSLRKLMAFSSINHLGWMLSAISISESVWMIYFMFYSFL-SLILTFMFNIFKLFH-------FNQLFSWFMNKKI 222
Cdd:PRK08676 290 SMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAhSLVKSGLFFSAGILHrqyrsdrFDRIFDVFRLQPV 369
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 317119878 223 LKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFF 275
Cdd:PRK08676 370 AAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGISVWLVLAVLLLLLLAASSF 422
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
40-279 |
2.08e-09 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 58.14 E-value: 2.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 40 STEASLKYFLTQALASTVLLFSVILLMLNNNMNIQINESFTSMMMMSTLLL-------------KSGAAPFHFWFPNMME 106
Cdd:PRK02504 159 SNEAALKYLLIGAASSAIFLYGSSLLYGLSGGSTQLSAIALALITSPSLGLalalvfviagiafKISAVPFHQWTPDVYE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 107 GLTWMNALMLMTWQKIAPLML-ISYLNI---------KNLLLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGW-MLS 175
Cdd:PRK02504 239 GSPTPVVAFLSVGSKAAGFALaIRLLVTafpsfdeqwKLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvMIG 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 176 AISISESVW--MIYFMfysflsLILTFM----FNIFKLF-------HFNQLFSWFMNKKILKFTLFMNLLSLGGLPPFLG 242
Cdd:PRK02504 319 LVAGTEAGYasMVFYL------LAYLFMnlgaFACVILFslrtgtdQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAG 392
|
250 260 270
....*....|....*....|....*....|....*..
gi 317119878 243 FLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRI 279
Cdd:PRK02504 393 FFGKIYLFWAGWQAGLYLLVLVGLVTSVISIYYYIRV 429
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
136-284 |
2.14e-07 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 51.87 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 136 LLLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAISISESVWM---IYFMFYS-----FLSLILTFMFNIFKL 207
Cdd:PRK12663 274 LLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGIngaIFYLVHDmvvktALFLIAGSLVRLTGY 353
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 317119878 208 FHFNQLFSWFMNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAF 284
Cdd:PRK12663 354 RSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFRIFFLAY 430
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
135-251 |
7.40e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 50.35 E-value: 7.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 135 NLLLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAISISESVWM---IYFMFYSFlsLILTFMFNIFKLFH-- 209
Cdd:PRK12665 274 TLLMVVALLTMVVGILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLsgaIYYVAHHI--TVQTTLFLVVGLIErq 351
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 317119878 210 -----FNQLFSWFMNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQ 251
Cdd:PRK12665 352 agsssLRRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
91-179 |
8.36e-07 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 50.43 E-value: 8.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 91 KSGAAPFHFWFPNMMEGLTWMNALM---LMTWQKIAPLMLISYL----NIKNLLLISV-ILSVIVGAIGGLNQTSLRKLM 162
Cdd:PRK12650 221 KSAQFPFHFWLPEAMAAITPVSAFLhaaAVVKAGIYLLLRFSPVfhdvAVWNWLLIIVgMITALMGAVFAVQKTDLKKLT 300
|
90
....*....|....*..
gi 317119878 163 AFSSINHLGWMLSAISI 179
Cdd:PRK12650 301 AYSTVSQLGWIVATIGV 317
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-294 |
1.05e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 46.73 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 1 MIIGTMITVTSNsWLGAWMGLEINLLSFIPLLSDNNNLMSTEASLKYFLTQALASTVLLFSVILLMLNNNMNIQI----- 75
Cdd:PRK06589 126 ILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTKTGNLDFvsggl 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 76 ---NESFTSMMMMSTLLLKSGAAPFHFWFPNMMEGLTWMNALM----------LMTWQKIAPLMLISYLNI----KNLLL 138
Cdd:PRK06589 205 fskNQSIILLLMFIYGIAKTAIFPVHSWLPAAMVAHYPVSALLhavivvktglFCIYKILLYIFGLSYLQRifaeFNWLI 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 139 ISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAISI----SESVWMIYFMFYSFLSLILTF-MFNIFKLFHFNQL 213
Cdd:PRK06589 285 FIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFIltpkALGAAILHLVSHSFAKICLFYsMGSIYSLKKEDQV 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 214 FSWFMNKKILKFTLFMNL---LSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMM----TLITLFFYLRICYAAFML 286
Cdd:PRK06589 365 DKLHGTSKSFPLISFIISissLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVMLVviasSILSALYLLKILSSIYKP 444
|
....*...
gi 317119878 287 NYFENNWI 294
Cdd:PRK06589 445 SLSENSFI 452
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
135-284 |
2.41e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 45.71 E-value: 2.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 135 NLLLISVILSVIVGAIGGLNQTSLRKLMAFSSINHLGWMLSAISISESVWMIYFMFY--------SFLSLILTFMFNIFK 206
Cdd:PRK07691 276 YLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYlihdmivkAALFLLIGIMIKITG 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 317119878 207 LFHFNQLFSWFMNKKILKFTLFMNLLSLGGLPPFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAF 284
Cdd:PRK07691 356 TTDLKKMGGLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKIFLKGF 433
|
|
| ND2 |
MTH00091 |
NADH dehydrogenase subunit 2; Provisional |
88-275 |
4.98e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177154 Cd Length: 273 Bit Score: 44.09 E-value: 4.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 88 LLLKSGAAPFHFWFPNMMEGLTWMNALMLMTWQKIAPLMLISYLNIKNLLLIsVILSVIVGAIGGLNQTSLRKLMAFSSI 167
Cdd:MTH00091 67 LMMKIGVAPFHFWIFSVTNGLFGWNLMWFLTFQKLPFLLVLLQFFSKNFFFL-LLFGLLICFFQMFLLKSYKNLLILSST 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 168 NHLGWMLSAISISESVWMIYFMFYSFLSLILTFMFNifklfhfnqlfswfmNKKILKFTLFMNLLSLGGLPPFLGFLPKW 247
Cdd:MTH00091 146 ESFNWLILSFFFSFFNVFFLFFYYFLLMLFLIPKFN---------------NVNKLNFVSWETLLVFMNLPFSVTFFVKI 210
|
170 180
....*....|....*....|....*...
gi 317119878 248 IVIQQLTNCSQYLQLMVMMMMTLITLFF 275
Cdd:MTH00091 211 FSLSEILKVLGFFLLFLLFLMFLSVLSL 238
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
40-285 |
1.23e-04 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 43.45 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 40 STEASLKYFLTQALASTVLLFSVILLM-------LNNNMNIQINESFTSMMMMSTLLL------KSGAAPFHFWFPN--- 103
Cdd:PRK08668 145 SRKASLKYFVLSAIGAYAMLYAIFLIYaktgtfdFADISQGLINDTSTGFALIVFLFLlafgvaKAGIFPLHVWAPDays 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 104 ---------MMEGLTWMNALMLMTWQKIAPL--MLISYLNIKNLLLISVIL------SVIVGAIGGLNQTSLRKLMAFSS 166
Cdd:PRK08668 225 eapqsfsavLSGQLSKLGAYGFLLVLYVLPGtkLFSEFGTYRGVPLFNYILawlgniSIIVGTLMAILQEDIKKLIAYSS 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 317119878 167 INHLGWMLSAISISESVWMIYFMFYSF-LSLILTFMFNIFKLFHFNQLFSWF--MNKKILK--FTLFMNL---LSLGGLP 238
Cdd:PRK08668 305 VANGGYILVGLGLGTSLGFAGGLFHVFnHALFKGLFFLIFAAVIYRTGTTKIseMGGLIEKmpFTFAMYLvaiISLAGIP 384
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 317119878 239 PFLGFLPKWIVIQQLTNCSQYLQLMVMMMMTLITLFFYLRICYAAFM 285
Cdd:PRK08668 385 PMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLAGVFL 431
|
|
| |
