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Conserved domains on  [gi|316939625|gb|ADU73659|]
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transcription elongation factor GreA/GreB domain-containing protein [Acetivibrio thermocellus DSM 1313]

Protein Classification

GreA/GreB family elongation factor( domain architecture ID 10472640)

GreA/GreB family elongation factor induces cleavage of the nascent transcript to allow the resumption of elongation from the new 3' terminus

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GreA_GreB pfam01272
Transcription elongation factor, GreA/GreB, C-term; This domain has an FKBP-like fold.
 69-146 2.98e-21

Transcription elongation factor, GreA/GreB, C-term; This domain has an FKBP-like fold.


:

Pssm-ID: 426171 [Multi-domain]  Cd Length: 77  Bit Score: 81.80  E-value: 2.98e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 316939625   69 EACPFVIINSIVEVFDCEEEEKCKYRIVLPFskEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGMLHYTILDIT 146
Cdd:pfam01272   1 LPADVVTFGSTVTLEDLDTGEEETYTIVGPD--EADPSKGKISVLSPLGKALLGKKVGDTVEVTAPGGKIKYEILKIE 76
 
Name Accession Description Interval E-value
GreA_GreB pfam01272
Transcription elongation factor, GreA/GreB, C-term; This domain has an FKBP-like fold.
 69-146 2.98e-21

Transcription elongation factor, GreA/GreB, C-term; This domain has an FKBP-like fold.


Pssm-ID: 426171 [Multi-domain]  Cd Length: 77  Bit Score: 81.80  E-value: 2.98e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 316939625   69 EACPFVIINSIVEVFDCEEEEKCKYRIVLPFskEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGMLHYTILDIT 146
Cdd:pfam01272   1 LPADVVTFGSTVTLEDLDTGEEETYTIVGPD--EADPSKGKISVLSPLGKALLGKKVGDTVEVTAPGGKIKYEILKIE 76
GreA COG0782
Transcription elongation factor, GreA/GreB family [Transcription];
74-146 2.43e-13

Transcription elongation factor, GreA/GreB family [Transcription];


Pssm-ID: 440545 [Multi-domain]  Cd Length: 156  Bit Score: 63.61  E-value: 2.43e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 316939625  74 VIINSIVEVFDCEEEEKCKYRIVLPfsKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGMLHYTILDIT 146
Cdd:COG0782   86 VFFGATVTLEDLEDGEEETYTIVGP--DEADPKKGKISIESPLGRALLGKKVGDEVEVTTPGGEREYEILEIE 156
greA PRK00226
transcription elongation factor GreA; Reviewed
 74-145 1.32e-11

transcription elongation factor GreA; Reviewed


Pssm-ID: 234693 [Multi-domain]  Cd Length: 157  Bit Score: 58.97  E-value: 1.32e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 316939625  74 VIINSIVEVFDCEEEEKCKYRIVlpFSKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGMLHYTILDI 145
Cdd:PRK00226  86 VKFGSTVTLKDLDTDEEETYQIV--GSDEADPKQGKISIESPIARALIGKKVGDTVEVTTPGGEYEYEILSV 155
 
Name Accession Description Interval E-value
GreA_GreB pfam01272
Transcription elongation factor, GreA/GreB, C-term; This domain has an FKBP-like fold.
 69-146 2.98e-21

Transcription elongation factor, GreA/GreB, C-term; This domain has an FKBP-like fold.


Pssm-ID: 426171 [Multi-domain]  Cd Length: 77  Bit Score: 81.80  E-value: 2.98e-21
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 316939625   69 EACPFVIINSIVEVFDCEEEEKCKYRIVLPFskEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGMLHYTILDIT 146
Cdd:pfam01272   1 LPADVVTFGSTVTLEDLDTGEEETYTIVGPD--EADPSKGKISVLSPLGKALLGKKVGDTVEVTAPGGKIKYEILKIE 76
GreA COG0782
Transcription elongation factor, GreA/GreB family [Transcription];
74-146 2.43e-13

Transcription elongation factor, GreA/GreB family [Transcription];


Pssm-ID: 440545 [Multi-domain]  Cd Length: 156  Bit Score: 63.61  E-value: 2.43e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 316939625  74 VIINSIVEVFDCEEEEKCKYRIVLPfsKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGMLHYTILDIT 146
Cdd:COG0782   86 VFFGATVTLEDLEDGEEETYTIVGP--DEADPKKGKISIESPLGRALLGKKVGDEVEVTTPGGEREYEILEIE 156
greA PRK00226
transcription elongation factor GreA; Reviewed
 74-145 1.32e-11

transcription elongation factor GreA; Reviewed


Pssm-ID: 234693 [Multi-domain]  Cd Length: 157  Bit Score: 58.97  E-value: 1.32e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 316939625  74 VIINSIVEVFDCEEEEKCKYRIVlpFSKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGMLHYTILDI 145
Cdd:PRK00226  86 VKFGSTVTLKDLDTDEEETYQIV--GSDEADPKQGKISIESPIARALIGKKVGDTVEVTTPGGEYEYEILSV 155
greB PRK01885
transcription elongation factor GreB; Reviewed
 80-145 4.83e-09

transcription elongation factor GreB; Reviewed


Pssm-ID: 179345 [Multi-domain]  Cd Length: 157  Bit Score: 52.16  E-value: 4.83e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 316939625  80 VEVFDCEEEEKcKYRIVLPfsKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGMLHYTILDI 145
Cdd:PRK01885  92 VEIENEDGEEK-RFRIVGP--DEIDGRKGYISIDSPMARALLKKEVGDEVTVNTPAGEAEWYVNEI 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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