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Conserved domains on  [gi|3169232|gb|AAC41291|]
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cytochrome b, partial (mitochondrion) [Cyanopsitta spixii]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 645.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00119  47 LTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00119 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00119 207 NNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00119 287 NKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIL 366

                        330
                 ....*....|...
gi 3169232   321 LPIVSFLENKILN 333
Cdd:MTH00119 367 FPLLGALENKMLN 379
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 645.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00119  47 LTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00119 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00119 207 NNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00119 287 NKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIL 366

                        330
                 ....*....|...
gi 3169232   321 LPIVSFLENKILN 333
Cdd:MTH00119 367 FPLLGALENKMLN 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-328 2.78e-115

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 339.07  E-value: 2.78e-115
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYlyKE----TWNTGILLLL 76
Cdd:COG1290  55 LTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLL 132

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   77 TLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFLITSLVLIHLTFL 155
Cdd:COG1290 133 LTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLL 212

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232  156 HESGSNNPLGI----PSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNllGDTENFTPANPLVTPPHIKPEWYFLW 231
Cdd:COG1290 213 HRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLP 290

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232  232 AYAILRSIP--NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVehPFILIGQLA 309
Cdd:COG1290 291 FYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSIN 368

                       330
                ....*....|....*....
gi 3169232  310 SLAYFTNILILLPIVSFLE 328
Cdd:COG1290 369 TVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-161 3.53e-71

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 219.55  E-value: 3.53e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSY--LYKETWNTGILLLLTL 78
Cdd:cd00284  38 LTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   79 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHES 158
Cdd:cd00284 118 MATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQ 197


                ...
gi 3169232  159 GSN 161
Cdd:cd00284 198 GSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-159 1.04e-61

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 194.91  E-value: 1.04e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232      1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYG--SYLYKETWNTGILLLLTL 78
Cdd:pfam00033  29 LTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLT 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     79 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHES 158
Cdd:pfam00033 109 MSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHET 188


                  .
gi 3169232    159 G 159
Cdd:pfam00033 189 G 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 191-280 9.35e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 9.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    191 LSLLTTLALFSPNLLGDtenftPANPLVTPPHIKPEWYFLWAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRAM 270
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGE-----PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|.
gi 3169232    271 TF-RPMSQLLF 280
Cdd:TIGR01156 123 PFrRPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 645.03  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00119  47 LTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00119 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00119 207 NNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00119 287 NKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIL 366

                        330
                 ....*....|...
gi 3169232   321 LPIVSFLENKILN 333
Cdd:MTH00119 367 FPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 588.54  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00131  46 LTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMM 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00131 126 TAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGS 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00131 206 NNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00131 286 NKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVL 365

                        330
                 ....*....|...
gi 3169232   321 LPIVSFLENKILN 333
Cdd:MTH00131 366 MPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 586.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00100  46 LTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMA 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00100 126 TAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGS 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00100 206 NNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIP 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00100 286 NKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILIL 365

                        330
                 ....*....|..
gi 3169232   321 LPIVSFLENKIL 332
Cdd:MTH00100 366 MPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-333 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 572.01  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00074  47 ITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00074 127 TAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00074 207 NNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00074 287 NKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIII 366

                        330
                 ....*....|...
gi 3169232   321 LPIVSFLENKILN 333
Cdd:MTH00074 367 IPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 1-323 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 545.67  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00191  43 LTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMA 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00191 123 TAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGS 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00191 203 NNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIP 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00191 283 NKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLL 362


                 ...
gi 3169232   321 LPI 323
Cdd:MTH00191 363 FPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-320 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 537.83  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00156  36 ITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMA 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00156 116 TAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGS 195

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00156 196 NNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIP 275

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00156 276 NKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 1-332 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 524.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00145  47 LTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMG 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00145 127 TAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00145 207 NNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTnILIL 320
Cdd:MTH00145 287 NKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFL-FFLI 365

                        330
                 ....*....|..
gi 3169232   321 LPIVSFLENKIL 332
Cdd:MTH00145 366 LPLVQKLWDNIL 377
CYTB MTH00034
cytochrome b; Validated
 1-333 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 521.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00034  46 ITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTML 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00034 126 TAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGS 205

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00034 206 NNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIP 285

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00034 286 NKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFF 365

                        330
                 ....*....|...
gi 3169232   321 LPIVSFLENKILN 333
Cdd:MTH00034 366 FPLISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 1-332 2.75e-173

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 485.72  E-value: 2.75e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00016  47 LTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00016 127 TAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00016 207 NNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIP 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTnILIL 320
Cdd:MTH00016 287 NKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF-YFMI 365

                        330
                 ....*....|..
gi 3169232   321 LPIVSFLENKIL 332
Cdd:MTH00016 366 NPLLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-333 1.45e-158

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 448.39  E-value: 1.45e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00053  47 ITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMIL 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00053 127 TAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00053 207 NNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIP 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00053 287 NKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLIL 366

                        330
                 ....*....|...
gi 3169232   321 LPIVSFLENKILN 333
Cdd:MTH00053 367 MPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-333 8.06e-158

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 446.45  E-value: 8.06e-158
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00022  45 ITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMA 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00022 125 TAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGS 204

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00022 205 NNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIP 284

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00022 285 NKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVL 364

                        330
                 ....*....|...
gi 3169232   321 LPIVSFLENKILN 333
Cdd:MTH00022 365 IPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-333 1.57e-149

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 425.49  E-value: 1.57e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00224  47 LTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMA 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00224 127 TAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGS 206

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00224 207 NNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIP 286

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTnILIL 320
Cdd:MTH00224 287 NKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFII 365

                        330
                 ....*....|...
gi 3169232   321 LPIVSFLENKILN 333
Cdd:MTH00224 366 SPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-329 2.26e-122

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 356.56  E-value: 2.26e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00033  43 LTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMML 122

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00033 123 TAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGS 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFS--PNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRS 238
Cdd:MTH00033 203 NEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRS 282

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   239 IPNKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPV-EHPFILIGQLASLAYFTNI 317
Cdd:MTH00033 283 IPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYF 362

                        330
                 ....*....|..
gi 3169232   318 LILLPIVSFLEN 329
Cdd:MTH00033 363 LVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-328 2.78e-115

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 339.07  E-value: 2.78e-115
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYlyKE----TWNTGILLLL 76
Cdd:COG1290  55 LTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLL 132

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   77 TLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFLITSLVLIHLTFL 155
Cdd:COG1290 133 LTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLL 212

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232  156 HESGSNNPLGI----PSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNllGDTENFTPANPLVTPPHIKPEWYFLW 231
Cdd:COG1290 213 HRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLP 290

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232  232 AYAILRSIP--NKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTWIGSQPVehPFILIGQLA 309
Cdd:COG1290 291 FYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSIN 368

                       330
                ....*....|....*....
gi 3169232  310 SLAYFTNILILLPIVSFLE 328
Cdd:COG1290 369 TVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-321 2.28e-103

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 307.25  E-value: 2.28e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00086  35 LTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMM 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00086 115 EAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGS 194

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLsLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIP 240
Cdd:MTH00086 195 TSSLYCHGDYDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIP 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   241 NKLGGVLALAASVLILFLSPLLHKSkqrAMTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASLAYFTNILIL 320
Cdd:MTH00086 274 NKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350


                 .
gi 3169232   321 L 321
Cdd:MTH00086 351 L 351
CYTB MTH00046
cytochrome b; Validated
 1-311 5.89e-83

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 255.29  E-value: 5.89e-83
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKETWNTGILLLLTLMA 80
Cdd:MTH00046  37 LTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMV 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    81 TAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHESGS 160
Cdd:MTH00046 117 EAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGS 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   161 NNPLGIPSN-CDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSI 239
Cdd:MTH00046 197 SNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSI 276

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 3169232   240 PNKLGGvLALAASVLILFLSPLLHKSKqramTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLASL 311
Cdd:MTH00046 277 NSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-161 3.53e-71

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 219.55  E-value: 3.53e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSY--LYKETWNTGILLLLTL 78
Cdd:cd00284  38 LTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLT 117

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   79 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHES 158
Cdd:cd00284 118 MATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQ 197


                ...
gi 3169232  159 GSN 161
Cdd:cd00284 198 GSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-159 1.04e-61

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 194.91  E-value: 1.04e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232      1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYG--SYLYKETWNTGILLLLTL 78
Cdd:pfam00033  29 LTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLT 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     79 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLHFLLPFLITSLVLIHLTFLHES 158
Cdd:pfam00033 109 MSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHET 188


                  .
gi 3169232    159 G 159
Cdd:pfam00033 189 G 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 162-309 7.68e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 175.91  E-value: 7.68e-55
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232  162 NPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLALFSPNLLGDTENFTPANPLVTPPHIKPEWYFLWAYAILRSIPN 241
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 3169232  242 KLGGVLALAASVLILFLSPLLHKSKQRAmTFRPMSQLLFWMLAANLFILTWIGSQPVEHPFILIGQLA 309
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
213-313 2.21e-48

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 157.64  E-value: 2.21e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    213 PANPLVTPPHIKPEWYFLWAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRAMTFRPMSQLLFWMLAANLFILTW 292
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 3169232    293 IGSQPVEHPFILIGQLASLAY 313
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
43-207 5.30e-44

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 148.93  E-value: 5.30e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     43 SFFFICIYLHIGRGFFYGSYLYKE--TWNTGILLLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAW 120
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    121 GGFSVDNPTLTRFFTLHF-LLPFLITSLVLIHLTFLHESGSNNPLGIPSNCDKIPFHPYFSLKDLLGFMIMLSLLTTLAL 199
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*...
gi 3169232    200 FSPNLLGD 207
Cdd:pfam13631 161 INPIWLGG 168
PRK03735 PRK03735
cytochrome b6; Provisional
 1-164 2.57e-29

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 112.11  E-value: 2.57e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     1 LTGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKE--TWNTGILLLLTL 78
Cdd:PRK03735  57 LSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVT 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    79 MATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFLITSLVLIHLTFLHE 157
Cdd:PRK03735 137 VGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRK 216


                 ....*..
gi 3169232   158 SGSNNPL 164
Cdd:PRK03735 217 QGISGPL 223
petB CHL00070
cytochrome b6
 2-164 1.34e-26

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 104.42  E-value: 1.34e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232     2 TGLLLAAHYTADTSLAFSSVANMCRNVQHGWLIRNLHANGASFFFICIYLHIGRGFFYGSYLYKE--TWNTGILLLLTLM 79
Cdd:CHL00070  50 TGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTV 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    80 ATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGHTLVEWAWGGFSVDNPTLTRFFTLH-FLLPFLITSLVLIHLTFLHES 158
Cdd:CHL00070 130 SFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQ 209


                 ....*.
gi 3169232   159 GSNNPL 164
Cdd:CHL00070 210 GISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 191-280 1.10e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 62.33  E-value: 1.10e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232   191 LSLLTTLALFSPNLLGDtenftPANPLVTPPHIKPEWYFLWAYAILRSIPNKLGGVLALAASVLILFLSPLLHK-SKQRA 269
Cdd:CHL00058  48 IACNVGLAVLEPSMIGE-----PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQN 122

                         90
                 ....*....|.
gi 3169232   270 MTFRPMSQLLF 280
Cdd:CHL00058 123 PFRRPVATTVF 133
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 191-280 1.82e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 61.73  E-value: 1.82e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232  191 LSLLTTLALFSPNLLGDtenftPANPLVTPPHIKPEWYFLWAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRAM 270
Cdd:COG5679  49 IALCIGLAVLDPAMMGE-----PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQN 123

                        90
                ....*....|.
gi 3169232  271 TF-RPMSQLLF 280
Cdd:COG5679 124 PFrRPVATAVF 134
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 191-280 9.35e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.43  E-value: 9.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 3169232    191 LSLLTTLALFSPNLLGDtenftPANPLVTPPHIKPEWYFLWAYAILRSIPNKLGGVLALAASVLILFLSPLLHKSKQRAM 270
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGE-----PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90
                  ....*....|.
gi 3169232    271 TF-RPMSQLLF 280
Cdd:TIGR01156 123 PFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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