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Concise Results
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Full Results
Type III site-specific deoxyribonuclease [Ruminococcus albus 7 = DSM 20455]
Protein Classification
type III restriction-modification system endonuclease ( domain architecture ID 11466451 )
type III restriction-modification system endonuclease cleaves DNA some 25 base-pairs downstream from the recognition site; may also act as a helicase involved in unwinding DNA at the cleavage site
List of domain hits
Name
Accession
Description
Interval
E-value
PM0699
COG3587 Restriction endonuclease, type III RM system [Defense mechanisms];
4-1033
0e+00
Restriction endonuclease, type III RM system [Defense mechanisms];
Pssm-ID: 442806 [Multi-domain]
Cd Length: 983
Bit Score: 1541.30
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 4 MK F KF TI Q P YQT E AVE S VV NV FAGQ SFNDR f TYRR D VEV E RTL L NAQKSD eely M GF A N a R V QL DGT QLL A NI R K I Q G RN 83
Cdd:COG3587 1 MK L KF KP Q D YQT D AVE A VV DL FAGQ PKCRS - NFTV D PGR E QGQ L GLEEDE ---- L GF G N - R L QL TDD QLL E NI Q K V Q L RN 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 84 NIKL S D SL T tk L G CCSLD VEMETGTGKTYVYI K T M FELNKRYGWSKFI V VVPSIAIREGV R KS FDVMQ EHF H E Q YGKK - A 162
Cdd:COG3587 75 GLPP S E SL E -- K G GYNFT VEMETGTGKTYVYI R T I FELNKRYGWSKFI I VVPSIAIREGV Y KS LQITE EHF K E L YGKK p A 152
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 163 R F F V YDSK N L SEIDD F SQ S AD I H VMIIN T QAFN S S FNE A knvegrkgdaaa RI I FSKR DDF SS RRPIDVIAA NN PI I I M D 242
Cdd:COG3587 153 R Y F I YDSK K L GQVRN F AS S SG I Q VMIIN I QAFN K S GKD A ------------ NR I YREL DDF GG RRPIDVIAA TR PI V I I D 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 243 EPQ KMG G D KT QA AL KQ F K PLF V L N YSATHK QH H E LVY V LDA L DAYNK H LVK R IEV K G FDI K N l R G T D S YLYL S SI II S p K 322
Cdd:COG3587 221 EPQ SVD G K KT KE AL AS F N PLF T L R YSATHK DK H N LVY R LDA V DAYNK K LVK K IEV A G ITV K G - A G N D A YLYL E SI EN S - K 298
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 323 KPP M ARIE FEIGYDK - S IN R E TR LLGVD DDLY S LS KNMN QY R GY RI SEID -- PVRGIVT FTNGE IIHS GE VQ GDV S E SD L 399
Cdd:COG3587 299 KPP T ARIE LDVKTKS g S VK R K TR TVKKG DDLY E LS GGRE QY K GY IV SEID ae KGNEYIE FTNGE VLRL GE AI GDV D E DA L 378
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 400 RR V QIRETI RS H FE KE KE LF D KGIK C LSLFFIDEVAKYR C YDEDGN E V NS EY GE IFE Q EY TDIL NE YL tlfdtp Y EK YL R 479
Cdd:COG3587 379 RR I QIRETI KE H LD KE LR LF P KGIK V LSLFFIDEVAKYR D YDEDGN P V KG EY AR IFE E EY KKLI NE PK ------ Y QT YL K 452
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 480 S -- I E V HQT H A GYFSIDKKGR KI D SSL KR GTDE SDD IS AYDLI L KDKERLLSF NT P V RFIFSHSALREGWDNPNVFQICT 557
Cdd:COG3587 453 D ie I D V EKV H N GYFSIDKKGR LK D TKV KR RGET SDD ED AYDLI M KDKERLLSF DE P L RFIFSHSALREGWDNPNVFQICT 532
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 558 LK H g GS S PTQ KRQE V GRGLRLCVNQNG D RMD SDT lgdlvq Q IN Q LTVIAS DG Y SE F VAD LQ RG I R EDL YD R PT KA SAE YF 637
Cdd:COG3587 533 LK E - SD S EIK KRQE I GRGLRLCVNQNG E RMD GFA ------ D IN V LTVIAS ES Y ED F AEG LQ KE I E EDL GI R FG KA EEH YF 605
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 638 T GK TLVL - N G QDITIT E KQG K D IY R YL I KN D YIDD EDH ITD QYLTD L ANRV LA s LPE SCIEIT E GVH AL VQ S I ydeh A LD 716
Cdd:COG3587 606 A GK VVTD e D G EEVPLG E EEA K A IY K YL V KN G YIDD KGK ITD KLKEA L KDGT LA - LPE ELEPYA E QII AL LK S V ---- A GK 680
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 717 DM I R N GNSTTI qe NA LN - D NF Y KKEFQ T LWN Y INHK YA Y T V E FDSEELIKK A I AY LD EKMF V A KL Q YTVT T G K Q ED klnn 795
Cdd:COG3587 681 LE I K N ARKRKV -- VK LN k A NF L KKEFQ E LWN R INHK TT Y R V D FDSEELIKK C I KA LD KNLR V S KL R YTVT K G E Q DI ---- 754
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 796 etik TG AG FST E K S K T Y T L D RT E G S SIPY DL I G EIAAGVK LTR RSTAR IL A GI k PTTY A YYC NNPEEFI S KA I RLI L EQK 875
Cdd:COG3587 755 ---- GK AG VKA E E S E T E T V D VD E N S QVLP DL L G KLQDETN LTR KTIVE IL K GI - SGRF A DFK NNPEEFI E KA S RLI N EQK 829
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 876 AT M IV EH I S Y NQTDGT YD SA IFT A E K - NNDF SK - A YR A Q K HIQ DYV FT D G yakdgq S VERKF V ED I D KAD EV C VYAKLP K 953
Cdd:COG3587 830 AT L IV DG I K Y DKLGDR YD QE IFT E E E l TGYL SK n A VK A K K SVY DYV VY D S ------ D VERKF A ED L D TSE EV K VYAKLP R 903
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 954 GF S IPTPVGNY S PDWAI A F HVGM VKH IF F I AETKG T M E SL N L KR IE Q AKI D CA K K L F AQ LS KA DV V Y HE VD N Y QH LL DKI 1033
Cdd:COG3587 904 GF K IPTPVGNY N PDWAI L F EEDG VKH LY F V AETKG S M S SL D L RE IE K AKI E CA R K H F KA LS ND DV K Y DV VD S Y EE LL EIV 983
Name
Accession
Description
Interval
E-value
PM0699
COG3587 Restriction endonuclease, type III RM system [Defense mechanisms];
4-1033
0e+00
Restriction endonuclease, type III RM system [Defense mechanisms];
Pssm-ID: 442806 [Multi-domain]
Cd Length: 983
Bit Score: 1541.30
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 4 MK F KF TI Q P YQT E AVE S VV NV FAGQ SFNDR f TYRR D VEV E RTL L NAQKSD eely M GF A N a R V QL DGT QLL A NI R K I Q G RN 83
Cdd:COG3587 1 MK L KF KP Q D YQT D AVE A VV DL FAGQ PKCRS - NFTV D PGR E QGQ L GLEEDE ---- L GF G N - R L QL TDD QLL E NI Q K V Q L RN 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 84 NIKL S D SL T tk L G CCSLD VEMETGTGKTYVYI K T M FELNKRYGWSKFI V VVPSIAIREGV R KS FDVMQ EHF H E Q YGKK - A 162
Cdd:COG3587 75 GLPP S E SL E -- K G GYNFT VEMETGTGKTYVYI R T I FELNKRYGWSKFI I VVPSIAIREGV Y KS LQITE EHF K E L YGKK p A 152
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 163 R F F V YDSK N L SEIDD F SQ S AD I H VMIIN T QAFN S S FNE A knvegrkgdaaa RI I FSKR DDF SS RRPIDVIAA NN PI I I M D 242
Cdd:COG3587 153 R Y F I YDSK K L GQVRN F AS S SG I Q VMIIN I QAFN K S GKD A ------------ NR I YREL DDF GG RRPIDVIAA TR PI V I I D 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 243 EPQ KMG G D KT QA AL KQ F K PLF V L N YSATHK QH H E LVY V LDA L DAYNK H LVK R IEV K G FDI K N l R G T D S YLYL S SI II S p K 322
Cdd:COG3587 221 EPQ SVD G K KT KE AL AS F N PLF T L R YSATHK DK H N LVY R LDA V DAYNK K LVK K IEV A G ITV K G - A G N D A YLYL E SI EN S - K 298
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 323 KPP M ARIE FEIGYDK - S IN R E TR LLGVD DDLY S LS KNMN QY R GY RI SEID -- PVRGIVT FTNGE IIHS GE VQ GDV S E SD L 399
Cdd:COG3587 299 KPP T ARIE LDVKTKS g S VK R K TR TVKKG DDLY E LS GGRE QY K GY IV SEID ae KGNEYIE FTNGE VLRL GE AI GDV D E DA L 378
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 400 RR V QIRETI RS H FE KE KE LF D KGIK C LSLFFIDEVAKYR C YDEDGN E V NS EY GE IFE Q EY TDIL NE YL tlfdtp Y EK YL R 479
Cdd:COG3587 379 RR I QIRETI KE H LD KE LR LF P KGIK V LSLFFIDEVAKYR D YDEDGN P V KG EY AR IFE E EY KKLI NE PK ------ Y QT YL K 452
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 480 S -- I E V HQT H A GYFSIDKKGR KI D SSL KR GTDE SDD IS AYDLI L KDKERLLSF NT P V RFIFSHSALREGWDNPNVFQICT 557
Cdd:COG3587 453 D ie I D V EKV H N GYFSIDKKGR LK D TKV KR RGET SDD ED AYDLI M KDKERLLSF DE P L RFIFSHSALREGWDNPNVFQICT 532
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 558 LK H g GS S PTQ KRQE V GRGLRLCVNQNG D RMD SDT lgdlvq Q IN Q LTVIAS DG Y SE F VAD LQ RG I R EDL YD R PT KA SAE YF 637
Cdd:COG3587 533 LK E - SD S EIK KRQE I GRGLRLCVNQNG E RMD GFA ------ D IN V LTVIAS ES Y ED F AEG LQ KE I E EDL GI R FG KA EEH YF 605
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 638 T GK TLVL - N G QDITIT E KQG K D IY R YL I KN D YIDD EDH ITD QYLTD L ANRV LA s LPE SCIEIT E GVH AL VQ S I ydeh A LD 716
Cdd:COG3587 606 A GK VVTD e D G EEVPLG E EEA K A IY K YL V KN G YIDD KGK ITD KLKEA L KDGT LA - LPE ELEPYA E QII AL LK S V ---- A GK 680
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 717 DM I R N GNSTTI qe NA LN - D NF Y KKEFQ T LWN Y INHK YA Y T V E FDSEELIKK A I AY LD EKMF V A KL Q YTVT T G K Q ED klnn 795
Cdd:COG3587 681 LE I K N ARKRKV -- VK LN k A NF L KKEFQ E LWN R INHK TT Y R V D FDSEELIKK C I KA LD KNLR V S KL R YTVT K G E Q DI ---- 754
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 796 etik TG AG FST E K S K T Y T L D RT E G S SIPY DL I G EIAAGVK LTR RSTAR IL A GI k PTTY A YYC NNPEEFI S KA I RLI L EQK 875
Cdd:COG3587 755 ---- GK AG VKA E E S E T E T V D VD E N S QVLP DL L G KLQDETN LTR KTIVE IL K GI - SGRF A DFK NNPEEFI E KA S RLI N EQK 829
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 876 AT M IV EH I S Y NQTDGT YD SA IFT A E K - NNDF SK - A YR A Q K HIQ DYV FT D G yakdgq S VERKF V ED I D KAD EV C VYAKLP K 953
Cdd:COG3587 830 AT L IV DG I K Y DKLGDR YD QE IFT E E E l TGYL SK n A VK A K K SVY DYV VY D S ------ D VERKF A ED L D TSE EV K VYAKLP R 903
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 954 GF S IPTPVGNY S PDWAI A F HVGM VKH IF F I AETKG T M E SL N L KR IE Q AKI D CA K K L F AQ LS KA DV V Y HE VD N Y QH LL DKI 1033
Cdd:COG3587 904 GF K IPTPVGNY N PDWAI L F EEDG VKH LY F V AETKG S M S SL D L RE IE K AKI E CA R K H F KA LS ND DV K Y DV VD S Y EE LL EIV 983
PRK15483
PRK15483 type III restriction-modification system endonuclease;
4-1036
1.38e-107
type III restriction-modification system endonuclease;
Pssm-ID: 237972 [Multi-domain]
Cd Length: 986
Bit Score: 358.58
E-value: 1.38e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 4 M KFKFTIQ P Y Q TE A VESVVNV F A G qsfndrftyrrdvevertl LNAQKS D EEL Y mgf AN ARVQ L DGTQLLAN irkiqgrn 83
Cdd:PRK15483 1 M GILLEEL P H Q EQ A LAAILAA F T G ------------------- IDIASA D PNH Y --- AN PLIK L RYENGIPG -------- 50
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 84 ni KLSDSLTT K LG ccs L D VE METGTGKTYVY IKT M F EL NKR YG WS KFI V VVP SI AI R EG V R K -- SF D VMQE HF HEQ Y --- 158
Cdd:PRK15483 51 -- RSRTRIDD K AN --- I D IK METGTGKTYVY TRL M Y EL HQK YG LF KFI I VVP TP AI K EG T R N fi QS D YAKQ HF SQF Y ent 125
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 159 --------- G K K AR ffv YDS KN L - SEIDD F SQ ----- S AD IHV MI IN TQAF NS SF neaknvegrkgdaaariif SK RDD F 223
Cdd:PRK15483 126 rielyvina G D K KK --- SGR KN F p AQLSN F VK asrqn S NT IHV LL IN AGML NS AS ------------------- MT RDD Y 183
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 224 SS ------ RR P I D VI AA NN P II I M DEP QKMGG D - K TQA A LKQF KP LFVLNYS AT -------------- H K QHHE L VYV L D 282
Cdd:PRK15483 184 DQ tllggf TS P V D AL AA TR P VV I I DEP HRFPR D n K FYQ A IEAL KP QMIIRFG AT fpditegkgknkct R K DYYN L QFD L N 263
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 283 A L D AY N KH LVK RIEVKGFDIKNLRGTDSY lylssi I ISPKKPPMARIEF eigydksi NRE T RL L G V DDD L YSLSKNMN qy 362
Cdd:PRK15483 264 A V D SF N DG LVK GVDIFYPEMPEEQANNVK ------ I VDSVTAKKLILRR -------- GKK T FE L A V GEN L ADIDPGFE -- 327
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 363 r G YR I SEID pv RGI V TFT NG EIIHS G EV - QGDVSESDLRRVQ I RET I RS HFE K E KEL F DKG ----- IK C LSLFFID EV A K 436
Cdd:PRK15483 328 - G LT I EYAG -- KTS V VLS NG LELEK G MA l VPGTYSQSYQELM I QQA I DK HFE T E RAN F LRR neppk IK T LSLFFID SI A S 404
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 437 YR cy D EDGN E -- VNSEYGEIFEQEYTDILNE Y --- LTLFDTP Y EK YL RS -- IEVHQT HAGYFS I D K kgrkidsslkrg TD 509
Cdd:PRK15483 405 YR -- D DNEL E gw LKLKFERLLKKKLERLIKT Y qrk TLPREVE Y LS YL QA tl ADLSSV HAGYFS E D N ------------ GS 470
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 510 ESDD I S A - YDL IL KD KE R LLSF N ------ TPV RF I FS HSA LREGWDNPNVFQI CT L KHG GS S p T Q K R QEVGRGLRL C V NQ 582
Cdd:PRK15483 471 SDEA I Q A e VND IL HN KE K LLSF K dedgnw NTR RF L FS KWT LREGWDNPNVFQI AK L RSS GS E - T S K L QEVGRGLRL P V DE 549
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 583 NG D R MDSDTL gdlvqqin Q L TVIA sd G Y S E -- F VAD L QRG I RE D L ydr PTKASA E YF T -- GKTLVLNGQDITITEKQGKD 658
Cdd:PRK15483 550 NG H R VSQEEF -------- R L NYLI -- D Y D E kd F ASK L VGE I NS D S --- KVQLNE E KL T ee MIQKIVTEKQKVDPDFTELR 616
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 659 IYRY L IKNDY ID DEDHITD qylt D LANRV L ASL PE S cie ITE G VHA lvqsiydehald DMI R NGNSTTIQENA L NDNF Y k 738
Cdd:PRK15483 617 LLED L DDKKI ID RSNNFKE ---- D GFDWL L EAY PE L --- FQT G LRK ------------ GKV R DNKPASKLTVK L RKEN Y - 676
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 739 K E FQT LW NY IN HK Y AYTV E FD SE ELIKKAI A YLDEKMFVAKL Q YT vttgkqe DKLNNETIKTG -- AGFSTEKSKTYTLDR 816
Cdd:PRK15483 677 E E LKS LW EQ IN RR Y MLQF E II SE ASLEQLA A EVLRDPALYIR Q IP ------- TQVQQRLVSND dn GRVEVSQREGELAAS 749
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 817 TEGSSIP Y - DLIGEI A AGV KL TRRS tarilag IKPTTY A YY ---- CNNPEEFISKAIRL I LEQKATMIV EH I ---- SY NQ 887
Cdd:PRK15483 750 EYLNGMK Y g EFLKQL A QRT KL PVNV ------- LHQALM A LL kevl HGDSRYLNEITLDN I IRAFNRWLN EH F aqrf SY KP 822
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 888 T D GTYDSAI FT AEKN --- NDF S KA ---- YRAQKH I Q D -- Y VF t D GYAK D g QSV E RKFVEDI D KA D E V C V YA K L P KG f SI P 958
Cdd:PRK15483 823 L D FQASTTA FT DKDG qfr EEI S AG iigk NVDTGA I P D er Y LY - D PLRY D - SPD E ELNILKN D YI D Q V S V FG K I P RR - SI Q 899
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 959 T P V --- G NY SPD WAIAFHVGMV K HIFFIA ETK GTM E SL NL KRI E QA KID C AKK L F AQ LS K -- AD VV YHEVDNYQHLLDK I 1033
Cdd:PRK15483 900 I P K ytg G TT SPD FMYVIEKDGG K SLNLVV ETK AVD E AE NL RVG E ER KID A AKK F F DM LS E dg IN VV FKTQTSAKAVASL I 979
...
gi 315448053 1034 N E L 1036
Cdd:PRK15483 980 N G L 982
RE_endonuc
pfam19778 Endonuclease domain; This represents the C-terminal endonuclease domain found in a variety of ...
913-1026
4.60e-34
Endonuclease domain; This represents the C-terminal endonuclease domain found in a variety of class III restriction endonuclease proteins.
Pssm-ID: 437610 [Multi-domain]
Cd Length: 109
Bit Score: 126.22
E-value: 4.60e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 913 K HIQ DYV FT D gyakdg QS VER K F V ED IDKADE V CVYA KLPK G F S IPTP V G N Y S PDWAI AF - HV G MVKHIF F I AETKGT ME 991
Cdd:pfam19778 2 K SLY DYV VY D ------ SE VER E F A ED LENDED V KLFV KLPK W F K IPTP L G T Y N PDWAI VV k RD G GGEKLY F V AETKGT LD 75
90 100 110
....*....|....*....|....*....|....*
gi 315448053 992 SLN L KRI E Q AKI D CAKK L F AQ LS k AD V VYHE V D N Y 1026
Cdd:pfam19778 76 KSD L RDS E K AKI R CAKK H F KA LS - EG V KFKV V T N E 109
DEXDc
smart00487 DEAD-like helicases superfamily;
102-191
2.66e-06
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain]
Cd Length: 201
Bit Score: 49.41
E-value: 2.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 102 VEME TG T GKT YVYIKTMF E LN KR YGWSKFI V V VP SIAIR E GV rks FDVMQEHFHEQYG K KARFFVY DSK NLSEIDDF S QS 181
Cdd:smart00487 29 LAAP TG S GKT LAALLPAL E AL KR GKGGRVL V L VP TRELA E QW --- AEELKKLGPSLGL K VVGLYGG DSK REQLRKLE S GK 105
90
....*....|
gi 315448053 182 A DI H V MIINT 191
Cdd:smart00487 106 T DI L V TTPGR 115
DEXHc_RE
cd17926 DEXH-box helicase domain of DEAD-like helicase restriction enzyme family proteins; This family ...
102-270
1.28e-05
DEXH-box helicase domain of DEAD-like helicase restriction enzyme family proteins; This family is composed of helicase restriction enzymes and similar proteins such as TFIIH basal transcription factor complex helicase XPB subunit. These proteins are part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350684 [Multi-domain]
Cd Length: 146
Bit Score: 46.14
E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 102 VEME TG T GKT YVYIKTMFE L NKR ygws KFIV VVP SI A IR egvrksf D VMQ E H F heqygkk AR F FVYD S KN L SEIDDFSQS 181
Cdd:cd17926 23 LVLP TG S GKT LTALALIAY L KEL ---- RTLI VVP TD A LL ------- D QWK E R F ------- ED F LGDS S IG L IGGGKKKDF 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 182 A D IH V MIINT Q afn S SF N E A KNVE grkgdaaari IFSKRDDF ssrrpidviaannpi I I M DE PQKMGGDKTQAA LK QFKP 261
Cdd:cd17926 85 D D AN V VVATY Q --- S LS N L A EEEK ---------- DLFDQFGL --------------- L I V DE AHHLPAKTFSEI LK ELNA 136
....*....
gi 315448053 262 LFV L NYS AT 270
Cdd:cd17926 137 KYR L GLT AT 145
Name
Accession
Description
Interval
E-value
PM0699
COG3587 Restriction endonuclease, type III RM system [Defense mechanisms];
4-1033
0e+00
Restriction endonuclease, type III RM system [Defense mechanisms];
Pssm-ID: 442806 [Multi-domain]
Cd Length: 983
Bit Score: 1541.30
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 4 MK F KF TI Q P YQT E AVE S VV NV FAGQ SFNDR f TYRR D VEV E RTL L NAQKSD eely M GF A N a R V QL DGT QLL A NI R K I Q G RN 83
Cdd:COG3587 1 MK L KF KP Q D YQT D AVE A VV DL FAGQ PKCRS - NFTV D PGR E QGQ L GLEEDE ---- L GF G N - R L QL TDD QLL E NI Q K V Q L RN 74
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 84 NIKL S D SL T tk L G CCSLD VEMETGTGKTYVYI K T M FELNKRYGWSKFI V VVPSIAIREGV R KS FDVMQ EHF H E Q YGKK - A 162
Cdd:COG3587 75 GLPP S E SL E -- K G GYNFT VEMETGTGKTYVYI R T I FELNKRYGWSKFI I VVPSIAIREGV Y KS LQITE EHF K E L YGKK p A 152
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 163 R F F V YDSK N L SEIDD F SQ S AD I H VMIIN T QAFN S S FNE A knvegrkgdaaa RI I FSKR DDF SS RRPIDVIAA NN PI I I M D 242
Cdd:COG3587 153 R Y F I YDSK K L GQVRN F AS S SG I Q VMIIN I QAFN K S GKD A ------------ NR I YREL DDF GG RRPIDVIAA TR PI V I I D 220
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 243 EPQ KMG G D KT QA AL KQ F K PLF V L N YSATHK QH H E LVY V LDA L DAYNK H LVK R IEV K G FDI K N l R G T D S YLYL S SI II S p K 322
Cdd:COG3587 221 EPQ SVD G K KT KE AL AS F N PLF T L R YSATHK DK H N LVY R LDA V DAYNK K LVK K IEV A G ITV K G - A G N D A YLYL E SI EN S - K 298
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 323 KPP M ARIE FEIGYDK - S IN R E TR LLGVD DDLY S LS KNMN QY R GY RI SEID -- PVRGIVT FTNGE IIHS GE VQ GDV S E SD L 399
Cdd:COG3587 299 KPP T ARIE LDVKTKS g S VK R K TR TVKKG DDLY E LS GGRE QY K GY IV SEID ae KGNEYIE FTNGE VLRL GE AI GDV D E DA L 378
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 400 RR V QIRETI RS H FE KE KE LF D KGIK C LSLFFIDEVAKYR C YDEDGN E V NS EY GE IFE Q EY TDIL NE YL tlfdtp Y EK YL R 479
Cdd:COG3587 379 RR I QIRETI KE H LD KE LR LF P KGIK V LSLFFIDEVAKYR D YDEDGN P V KG EY AR IFE E EY KKLI NE PK ------ Y QT YL K 452
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 480 S -- I E V HQT H A GYFSIDKKGR KI D SSL KR GTDE SDD IS AYDLI L KDKERLLSF NT P V RFIFSHSALREGWDNPNVFQICT 557
Cdd:COG3587 453 D ie I D V EKV H N GYFSIDKKGR LK D TKV KR RGET SDD ED AYDLI M KDKERLLSF DE P L RFIFSHSALREGWDNPNVFQICT 532
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 558 LK H g GS S PTQ KRQE V GRGLRLCVNQNG D RMD SDT lgdlvq Q IN Q LTVIAS DG Y SE F VAD LQ RG I R EDL YD R PT KA SAE YF 637
Cdd:COG3587 533 LK E - SD S EIK KRQE I GRGLRLCVNQNG E RMD GFA ------ D IN V LTVIAS ES Y ED F AEG LQ KE I E EDL GI R FG KA EEH YF 605
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 638 T GK TLVL - N G QDITIT E KQG K D IY R YL I KN D YIDD EDH ITD QYLTD L ANRV LA s LPE SCIEIT E GVH AL VQ S I ydeh A LD 716
Cdd:COG3587 606 A GK VVTD e D G EEVPLG E EEA K A IY K YL V KN G YIDD KGK ITD KLKEA L KDGT LA - LPE ELEPYA E QII AL LK S V ---- A GK 680
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 717 DM I R N GNSTTI qe NA LN - D NF Y KKEFQ T LWN Y INHK YA Y T V E FDSEELIKK A I AY LD EKMF V A KL Q YTVT T G K Q ED klnn 795
Cdd:COG3587 681 LE I K N ARKRKV -- VK LN k A NF L KKEFQ E LWN R INHK TT Y R V D FDSEELIKK C I KA LD KNLR V S KL R YTVT K G E Q DI ---- 754
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 796 etik TG AG FST E K S K T Y T L D RT E G S SIPY DL I G EIAAGVK LTR RSTAR IL A GI k PTTY A YYC NNPEEFI S KA I RLI L EQK 875
Cdd:COG3587 755 ---- GK AG VKA E E S E T E T V D VD E N S QVLP DL L G KLQDETN LTR KTIVE IL K GI - SGRF A DFK NNPEEFI E KA S RLI N EQK 829
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 876 AT M IV EH I S Y NQTDGT YD SA IFT A E K - NNDF SK - A YR A Q K HIQ DYV FT D G yakdgq S VERKF V ED I D KAD EV C VYAKLP K 953
Cdd:COG3587 830 AT L IV DG I K Y DKLGDR YD QE IFT E E E l TGYL SK n A VK A K K SVY DYV VY D S ------ D VERKF A ED L D TSE EV K VYAKLP R 903
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 954 GF S IPTPVGNY S PDWAI A F HVGM VKH IF F I AETKG T M E SL N L KR IE Q AKI D CA K K L F AQ LS KA DV V Y HE VD N Y QH LL DKI 1033
Cdd:COG3587 904 GF K IPTPVGNY N PDWAI L F EEDG VKH LY F V AETKG S M S SL D L RE IE K AKI E CA R K H F KA LS ND DV K Y DV VD S Y EE LL EIV 983
PRK15483
PRK15483 type III restriction-modification system endonuclease;
4-1036
1.38e-107
type III restriction-modification system endonuclease;
Pssm-ID: 237972 [Multi-domain]
Cd Length: 986
Bit Score: 358.58
E-value: 1.38e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 4 M KFKFTIQ P Y Q TE A VESVVNV F A G qsfndrftyrrdvevertl LNAQKS D EEL Y mgf AN ARVQ L DGTQLLAN irkiqgrn 83
Cdd:PRK15483 1 M GILLEEL P H Q EQ A LAAILAA F T G ------------------- IDIASA D PNH Y --- AN PLIK L RYENGIPG -------- 50
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 84 ni KLSDSLTT K LG ccs L D VE METGTGKTYVY IKT M F EL NKR YG WS KFI V VVP SI AI R EG V R K -- SF D VMQE HF HEQ Y --- 158
Cdd:PRK15483 51 -- RSRTRIDD K AN --- I D IK METGTGKTYVY TRL M Y EL HQK YG LF KFI I VVP TP AI K EG T R N fi QS D YAKQ HF SQF Y ent 125
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 159 --------- G K K AR ffv YDS KN L - SEIDD F SQ ----- S AD IHV MI IN TQAF NS SF neaknvegrkgdaaariif SK RDD F 223
Cdd:PRK15483 126 rielyvina G D K KK --- SGR KN F p AQLSN F VK asrqn S NT IHV LL IN AGML NS AS ------------------- MT RDD Y 183
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 224 SS ------ RR P I D VI AA NN P II I M DEP QKMGG D - K TQA A LKQF KP LFVLNYS AT -------------- H K QHHE L VYV L D 282
Cdd:PRK15483 184 DQ tllggf TS P V D AL AA TR P VV I I DEP HRFPR D n K FYQ A IEAL KP QMIIRFG AT fpditegkgknkct R K DYYN L QFD L N 263
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 283 A L D AY N KH LVK RIEVKGFDIKNLRGTDSY lylssi I ISPKKPPMARIEF eigydksi NRE T RL L G V DDD L YSLSKNMN qy 362
Cdd:PRK15483 264 A V D SF N DG LVK GVDIFYPEMPEEQANNVK ------ I VDSVTAKKLILRR -------- GKK T FE L A V GEN L ADIDPGFE -- 327
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 363 r G YR I SEID pv RGI V TFT NG EIIHS G EV - QGDVSESDLRRVQ I RET I RS HFE K E KEL F DKG ----- IK C LSLFFID EV A K 436
Cdd:PRK15483 328 - G LT I EYAG -- KTS V VLS NG LELEK G MA l VPGTYSQSYQELM I QQA I DK HFE T E RAN F LRR neppk IK T LSLFFID SI A S 404
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 437 YR cy D EDGN E -- VNSEYGEIFEQEYTDILNE Y --- LTLFDTP Y EK YL RS -- IEVHQT HAGYFS I D K kgrkidsslkrg TD 509
Cdd:PRK15483 405 YR -- D DNEL E gw LKLKFERLLKKKLERLIKT Y qrk TLPREVE Y LS YL QA tl ADLSSV HAGYFS E D N ------------ GS 470
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 510 ESDD I S A - YDL IL KD KE R LLSF N ------ TPV RF I FS HSA LREGWDNPNVFQI CT L KHG GS S p T Q K R QEVGRGLRL C V NQ 582
Cdd:PRK15483 471 SDEA I Q A e VND IL HN KE K LLSF K dedgnw NTR RF L FS KWT LREGWDNPNVFQI AK L RSS GS E - T S K L QEVGRGLRL P V DE 549
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 583 NG D R MDSDTL gdlvqqin Q L TVIA sd G Y S E -- F VAD L QRG I RE D L ydr PTKASA E YF T -- GKTLVLNGQDITITEKQGKD 658
Cdd:PRK15483 550 NG H R VSQEEF -------- R L NYLI -- D Y D E kd F ASK L VGE I NS D S --- KVQLNE E KL T ee MIQKIVTEKQKVDPDFTELR 616
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 659 IYRY L IKNDY ID DEDHITD qylt D LANRV L ASL PE S cie ITE G VHA lvqsiydehald DMI R NGNSTTIQENA L NDNF Y k 738
Cdd:PRK15483 617 LLED L DDKKI ID RSNNFKE ---- D GFDWL L EAY PE L --- FQT G LRK ------------ GKV R DNKPASKLTVK L RKEN Y - 676
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 739 K E FQT LW NY IN HK Y AYTV E FD SE ELIKKAI A YLDEKMFVAKL Q YT vttgkqe DKLNNETIKTG -- AGFSTEKSKTYTLDR 816
Cdd:PRK15483 677 E E LKS LW EQ IN RR Y MLQF E II SE ASLEQLA A EVLRDPALYIR Q IP ------- TQVQQRLVSND dn GRVEVSQREGELAAS 749
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 817 TEGSSIP Y - DLIGEI A AGV KL TRRS tarilag IKPTTY A YY ---- CNNPEEFISKAIRL I LEQKATMIV EH I ---- SY NQ 887
Cdd:PRK15483 750 EYLNGMK Y g EFLKQL A QRT KL PVNV ------- LHQALM A LL kevl HGDSRYLNEITLDN I IRAFNRWLN EH F aqrf SY KP 822
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 888 T D GTYDSAI FT AEKN --- NDF S KA ---- YRAQKH I Q D -- Y VF t D GYAK D g QSV E RKFVEDI D KA D E V C V YA K L P KG f SI P 958
Cdd:PRK15483 823 L D FQASTTA FT DKDG qfr EEI S AG iigk NVDTGA I P D er Y LY - D PLRY D - SPD E ELNILKN D YI D Q V S V FG K I P RR - SI Q 899
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 959 T P V --- G NY SPD WAIAFHVGMV K HIFFIA ETK GTM E SL NL KRI E QA KID C AKK L F AQ LS K -- AD VV YHEVDNYQHLLDK I 1033
Cdd:PRK15483 900 I P K ytg G TT SPD FMYVIEKDGG K SLNLVV ETK AVD E AE NL RVG E ER KID A AKK F F DM LS E dg IN VV FKTQTSAKAVASL I 979
...
gi 315448053 1034 N E L 1036
Cdd:PRK15483 980 N G L 982
RE_endonuc
pfam19778 Endonuclease domain; This represents the C-terminal endonuclease domain found in a variety of ...
913-1026
4.60e-34
Endonuclease domain; This represents the C-terminal endonuclease domain found in a variety of class III restriction endonuclease proteins.
Pssm-ID: 437610 [Multi-domain]
Cd Length: 109
Bit Score: 126.22
E-value: 4.60e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 913 K HIQ DYV FT D gyakdg QS VER K F V ED IDKADE V CVYA KLPK G F S IPTP V G N Y S PDWAI AF - HV G MVKHIF F I AETKGT ME 991
Cdd:pfam19778 2 K SLY DYV VY D ------ SE VER E F A ED LENDED V KLFV KLPK W F K IPTP L G T Y N PDWAI VV k RD G GGEKLY F V AETKGT LD 75
90 100 110
....*....|....*....|....*....|....*
gi 315448053 992 SLN L KRI E Q AKI D CAKK L F AQ LS k AD V VYHE V D N Y 1026
Cdd:pfam19778 76 KSD L RDS E K AKI R CAKK H F KA LS - EG V KFKV V T N E 109
ResIII
pfam04851 Type III restriction enzyme, res subunit;
102-270
7.19e-15
Type III restriction enzyme, res subunit;
Pssm-ID: 398492 [Multi-domain]
Cd Length: 162
Bit Score: 73.09
E-value: 7.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 102 VE M E TG T GKT YVYI K TMFE L N K RYGWS K FIVV VP SIAIR E GVRKS F dvmqehfh EQYGKKARFF vyd SKNL S EIDDFSQS 181
Cdd:pfam04851 28 IV M A TG S GKT LTAA K LIAR L F K KGPIK K VLFL VP RKDLL E QALEE F -------- KKFLPNYVEI --- GEII S GDKKDESV 96
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 182 A D IHVMIINT Q AFNSSFNE A KNVEGRK gdaaariifskrddfssrrpidviaa NNPI II M DE PQKM G GDKTQAA L KQ FKP 261
Cdd:pfam04851 97 D D NKIVVTTI Q SLYKALEL A SLELLPD -------------------------- FFDV II I DE AHRS G ASSYRNI L EY FKP 150
....*....
gi 315448053 262 L F V L NYS AT 270
Cdd:pfam04851 151 A F L L GLT AT 159
DEXDc
smart00487 DEAD-like helicases superfamily;
102-191
2.66e-06
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain]
Cd Length: 201
Bit Score: 49.41
E-value: 2.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 102 VEME TG T GKT YVYIKTMF E LN KR YGWSKFI V V VP SIAIR E GV rks FDVMQEHFHEQYG K KARFFVY DSK NLSEIDDF S QS 181
Cdd:smart00487 29 LAAP TG S GKT LAALLPAL E AL KR GKGGRVL V L VP TRELA E QW --- AEELKKLGPSLGL K VVGLYGG DSK REQLRKLE S GK 105
90
....*....|
gi 315448053 182 A DI H V MIINT 191
Cdd:smart00487 106 T DI L V TTPGR 115
SSL2
COG1061 Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
102-318
5.95e-06
Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair];
Pssm-ID: 440681 [Multi-domain]
Cd Length: 566
Bit Score: 50.02
E-value: 5.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 102 V EME TGTGKT YVYIKTMF EL NKR ygw SKFI V V VP SIAIR E gvrksfdvmqehfheqygkkarffvydsknlseiddfs Q S 181
Cdd:COG1061 105 V VAP TGTGKT VLALALAA EL LRG --- KRVL V L VP RRELL E -------------------------------------- Q W 143
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 182 A D ihvmiintq AFNSSFNEAKNVE G R K g D AA A R I IFSKRDDFSS R RPI D VIAANNPII I M DE PQKM G GDKTQAA L KQ F KP 261
Cdd:COG1061 144 A E --------- ELRRFLGDPLAGG G K K - D SD A P I TVATYQSLAR R AHL D ELGDRFGLV I I DE AHHA G APSYRRI L EA F PA 213
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 315448053 262 LFV L NYS AT ---------- HKQHHEL VY VLDALD A YNKHLVKRI E VK G FDIKNLRGTDS Y LY LS SII 318
Cdd:COG1061 214 AYR L GLT AT pfrsdgreil LFLFDGI VY EYSLKE A IEDGYLAPP E YY G IRVDLTDERAE Y DA LS ERL 280
DEXHc_RE
cd17926 DEXH-box helicase domain of DEAD-like helicase restriction enzyme family proteins; This family ...
102-270
1.28e-05
DEXH-box helicase domain of DEAD-like helicase restriction enzyme family proteins; This family is composed of helicase restriction enzymes and similar proteins such as TFIIH basal transcription factor complex helicase XPB subunit. These proteins are part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350684 [Multi-domain]
Cd Length: 146
Bit Score: 46.14
E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 102 VEME TG T GKT YVYIKTMFE L NKR ygws KFIV VVP SI A IR egvrksf D VMQ E H F heqygkk AR F FVYD S KN L SEIDDFSQS 181
Cdd:cd17926 23 LVLP TG S GKT LTALALIAY L KEL ---- RTLI VVP TD A LL ------- D QWK E R F ------- ED F LGDS S IG L IGGGKKKDF 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315448053 182 A D IH V MIINT Q afn S SF N E A KNVE grkgdaaari IFSKRDDF ssrrpidviaannpi I I M DE PQKMGGDKTQAA LK QFKP 261
Cdd:cd17926 85 D D AN V VVATY Q --- S LS N L A EEEK ---------- DLFDQFGL --------------- L I V DE AHHLPAKTFSEI LK ELNA 136
....*....
gi 315448053 262 LFV L NYS AT 270
Cdd:cd17926 137 KYR L GLT AT 145
nrdA
PHA02572 ribonucleoside-diphosphate reductase subunit alpha; Provisional
880-943
8.87e-03
ribonucleoside-diphosphate reductase subunit alpha; Provisional
Pssm-ID: 222883 [Multi-domain]
Cd Length: 753
Bit Score: 40.09
E-value: 8.87e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 315448053 880 VE HIS YNQTD G T YD SA I FTAEKNNDFSKAYRAQK H IQ D YV FT dg YA KDG Q SV E RKF V E D IDKAD 943
Cdd:PHA02572 101 ID HIS KCVNE G K YD PE I LSKYSAEEITYLESFID H DR D FE FT -- YA GAM Q LK E KYL V Q D RSTGE 162
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
