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Conserved domains on  [gi|315192483|gb|ADT90627|]
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Nfil3, partial [Xenopus laevis]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Vert_IL3-reg_TF super family cl05841
Vertebrate interleukin-3 regulated transcription factor; This family includes vertebrate ...
 2-112 1.57e-63

Vertebrate interleukin-3 regulated transcription factor; This family includes vertebrate transcription factors, some of which are regulated by IL-3/adenovirus E4 promoter binding protein. Others were found to strongly repress transcription in a DNA-binding-site-dependent manner.


The actual alignment was detected with superfamily member pfam06529:

Pssm-ID: 368956  Cd Length: 332  Bit Score: 195.81  E-value: 1.57e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315192483    2 KSQRIKQEQMEAGNFSRDAREESNTFQGSIYANYIGNTFSGYSHSPPLLHINRSSSNSPRTSEADEGVVGKTSDVEDEQQ 81
Cdd:pfam06529  85 KFQAIKQEPVELESYAREPRDDRGSYPASIYQNYMGSSFPGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQ 164

                          90       100       110
                  ....*....|....*....|....*....|..
gi 315192483   82 VPKGPIHSPIELKNGHATIIKVPEVN-SALPH 112
Cdd:pfam06529 165 VPKGPIHSPVELKSVHATVVKVPEVNsSALPH 196
 
Name Accession Description Interval E-value
Vert_IL3-reg_TF pfam06529
Vertebrate interleukin-3 regulated transcription factor; This family includes vertebrate ...
 2-112 1.57e-63

Vertebrate interleukin-3 regulated transcription factor; This family includes vertebrate transcription factors, some of which are regulated by IL-3/adenovirus E4 promoter binding protein. Others were found to strongly repress transcription in a DNA-binding-site-dependent manner.


Pssm-ID: 368956  Cd Length: 332  Bit Score: 195.81  E-value: 1.57e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315192483    2 KSQRIKQEQMEAGNFSRDAREESNTFQGSIYANYIGNTFSGYSHSPPLLHINRSSSNSPRTSEADEGVVGKTSDVEDEQQ 81
Cdd:pfam06529  85 KFQAIKQEPVELESYAREPRDDRGSYPASIYQNYMGSSFPGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQ 164

                          90       100       110
                  ....*....|....*....|....*....|..
gi 315192483   82 VPKGPIHSPIELKNGHATIIKVPEVN-SALPH 112
Cdd:pfam06529 165 VPKGPIHSPVELKSVHATVVKVPEVNsSALPH 196
 
Name Accession Description Interval E-value
Vert_IL3-reg_TF pfam06529
Vertebrate interleukin-3 regulated transcription factor; This family includes vertebrate ...
 2-112 1.57e-63

Vertebrate interleukin-3 regulated transcription factor; This family includes vertebrate transcription factors, some of which are regulated by IL-3/adenovirus E4 promoter binding protein. Others were found to strongly repress transcription in a DNA-binding-site-dependent manner.


Pssm-ID: 368956  Cd Length: 332  Bit Score: 195.81  E-value: 1.57e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315192483    2 KSQRIKQEQMEAGNFSRDAREESNTFQGSIYANYIGNTFSGYSHSPPLLHINRSSSNSPRTSEADEGVVGKTSDVEDEQQ 81
Cdd:pfam06529  85 KFQAIKQEPVELESYAREPRDDRGSYPASIYQNYMGSSFPGYSHSPPLLQVNRSSSNSPRTSETDDGVVGKSSDGEDEQQ 164

                          90       100       110
                  ....*....|....*....|....*....|..
gi 315192483   82 VPKGPIHSPIELKNGHATIIKVPEVN-SALPH 112
Cdd:pfam06529 165 VPKGPIHSPVELKSVHATVVKVPEVNsSALPH 196
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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