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Conserved domains on  [gi|315001577|emb|CAQ63576|]
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cytochrome b, partial (mitochondrion) [Chelonoidis denticulatus]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 721.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00119   6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00119  86 NGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00119 166 WGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLAL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00119 246 FSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPMTGVIENKMLNL 375
Cdd:MTH00119 326 FWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 721.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00119   6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00119  86 NGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00119 166 WGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLAL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00119 246 FSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPMTGVIENKMLNL 375
Cdd:MTH00119 326 FWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-369 9.47e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 374.90  E-value: 9.47e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   7 IKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIF 86
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  87 FMCIYLHIGRGLYYGSylYKE----TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWG 162
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 163 GFSVDNATLTRFFTFH-FLLPFTIIGLAIVHLLFLHETGSNNPMG----LNSNADKIPFHPYFSYKDLLGLILMLALLLT 237
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 238 LTLFSPNllGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIP--NKLGGVLALLFSILVLFMMPILHTSKQRSTMFRP 315
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 315001577 316 LSQILLWCLTADLLTLTWIGGQPVenPFITIGQMASMLYFTILLILMPMTGVIE 369
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-202 1.65e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 285.80  E-value: 1.65e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   5 PMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGAS 84
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  85 IFFMCIYLHIGRGLYYGSY--LYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWG 162
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 315001577 163 GFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSN 202
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-200 4.63e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 261.16  E-value: 4.63e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   14 FIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFFMCIYLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   94 IGRGLYYG--SYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATL 171
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 315001577  172 TRFFTFHFLLPFTIIGLAIVHLLFLHETG 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 254-314 9.10e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.25  E-value: 9.10e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 315001577  254 PANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFR 314
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 721.30  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00119   6 RKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00119  86 NGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00119 166 WGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLAL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00119 246 FSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPMTGVIENKMLNL 375
Cdd:MTH00119 326 FWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-374 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 702.95  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLAL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00131 245 FSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPMTGVIENKMLN 374
Cdd:MTH00131 325 FWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 1-373 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 699.47  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00100   5 RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00100  85 NGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00100 165 WGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00100 245 FSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPMTGVIENKML 373
Cdd:MTH00100 325 FWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 682.18  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00074   6 RKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00074  86 NGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00074 166 WGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00074 246 FSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQIL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPMTGVIENKMLNL 375
Cdd:MTH00074 326 FWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-364 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 644.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPM 364
Cdd:MTH00191 322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 1-374 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 609.78  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00034 245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPMTGVIENKMLN 374
Cdd:MTH00034 325 FWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00156
cytochrome b; Provisional
 7-362 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 606.39  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   7 IKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIF 86
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  87 FMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSV 166
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 167 DNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTLFSPNLL 246
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 247 GDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQILLWCLTA 326
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 315001577 327 DLLTLTWIGGQPVENPFITIGQMASMLYFTILLILM 362
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-373 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 593.42  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00145   6 RKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00145  86 NGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00145 166 WGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00145 246 FFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILmPMTGVIENKML 373
Cdd:MTH00145 326 FWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL-PLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-373 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 560.45  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00016   6 RKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00016  86 NGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWL 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00016 166 WGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00016 246 LWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQIL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|...
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLIlMPMTGVIENKML 373
Cdd:MTH00016 326 FWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMI-NPLLMKLWDKLL 377
CYTB MTH00053
cytochrome b; Provisional
 1-375 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 531.20  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00053   6 RKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00053  86 NGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWV 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00053 166 WGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVF 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00053 246 LFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKIL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPMTGVIENKMLNL 375
Cdd:MTH00053 326 FWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00022
cytochrome b; Validated
 1-374 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 521.57  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00022 244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMA 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTILLILMPMTGVIENKMLN 374
Cdd:MTH00022 324 FWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-374 1.96e-179

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 503.30  E-value: 1.96e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   1 RKTHPMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHA 80
Cdd:MTH00224   6 RTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  81 NGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWI 160
Cdd:MTH00224  86 NGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWI 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 161 WGGFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:MTH00224 166 WGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVL 245

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 241 FSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQIL 320
Cdd:MTH00224 246 FEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLL 325

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 315001577 321 LWCLTADLLTLTWIGGQPVENPFITIGQMASMLYFTiLLILMPMTGVIENKMLN 374
Cdd:MTH00224 326 FWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 12-370 3.01e-135

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 391.22  E-value: 3.01e-135
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  12 NSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFFMCIY 91
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  92 LHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATL 171
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 172 TRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTLFS--PNLLGDP 249
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 250 DNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQILLWCLTADLL 329
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 315001577 330 TLTWIGGQPV-ENPFITIGQMASMLYFTILLILMPMTGVIEN 370
Cdd:MTH00033 333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
7-369 9.47e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 374.90  E-value: 9.47e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   7 IKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIF 86
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  87 FMCIYLHIGRGLYYGSylYKE----TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWG 162
Cdd:COG1290  100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 163 GFSVDNATLTRFFTFH-FLLPFTIIGLAIVHLLFLHETGSNNPMG----LNSNADKIPFHPYFSYKDLLGLILMLALLLT 237
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 238 LTLFSPNllGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIP--NKLGGVLALLFSILVLFMMPILHTSKQRSTMFRP 315
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 315001577 316 LSQILLWCLTADLLTLTWIGGQPVenPFITIGQMASMLYFTILLILMPMTGVIE 369
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 8-362 4.25e-122

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 356.56  E-value: 4.25e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   8 KIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFF 87
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  88 MCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVD 167
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 168 NATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDlLGLILMLALLLTLTLFSPNLLG 247
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 248 DPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSkqrSTMFRPLSQILLWCLTAD 327
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 315001577 328 LLTLTWIGGQPVENPFITIGQMASMLYFTILLILM 362
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 5-202 1.65e-96

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 285.80  E-value: 1.65e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   5 PMIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGAS 84
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  85 IFFMCIYLHIGRGLYYGSY--LYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWG 162
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 315001577 163 GFSVDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSN 202
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 6-360 5.07e-93

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 282.64  E-value: 5.07e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   6 MIKIINNSFIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASI 85
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  86 FFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFS 165
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 166 VDNATLTRFFTFHFLLPFTIIGLAIVHLLFLHETGSNNPMGL-NSNADKIPFHPYFSYKDLLGLILMLALLLTLTLFSPN 244
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 245 LLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGvLALLFSILVLFMMPilhtSKQRSTMFRPLSQILLWCL 324
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLI 315

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 315001577 325 TADLLTLTWIGGQPVENPFITIGQMASMLYFTILLI 360
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
14-200 4.63e-87

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 261.16  E-value: 4.63e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   14 FIDLPSPSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFFMCIYLH 93
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   94 IGRGLYYG--SYLYKETWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATL 171
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 315001577  172 TRFFTFHFLLPFTIIGLAIVHLLFLHETG 200
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 203-350 5.85e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 162.04  E-value: 5.85e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 203 NPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTLFSPNLLGDPDNFTPANPLSTPPHIKPEWNFLFAYAILRSIPN 282
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 315001577 283 KLGGVLALLFSILVLFMMPILHTSKQRSTmFRPLSQILLWCLTADLLTLTWIGGQPVENPFITIGQMA 350
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
84-249 2.66e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 153.17  E-value: 2.66e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577   84 SIFFMCIYLHIGRGLYYGSYLYKE--TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIW 161
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  162 GGFSVDNATLTRFFTFHF-LLPFTIIGLAIVHLLFLHETGSNNPMGLNSNADKIPFHPYFSYKDLLGLILMLALLLTLTL 240
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 315001577  241 FSPNLLGDP 249
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
254-354 5.18e-44

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 147.63  E-value: 5.18e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  254 PANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFRPLSQILLWCLTADLLTLTW 333
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 315001577  334 IGGQPVENPFITIGQMASMLY 354
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 29-205 1.39e-38

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 137.54  E-value: 1.39e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  29 FGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKE- 107
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 108 -TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATLTRFFTFH-FLLPFTI 185
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 315001577 186 IGLAIVHLLFLHETGSNNPM 205
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 20-205 3.79e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 125.60  E-value: 3.79e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577  20 PSNISAWWNFGSLLGICLMLQIITGIFLAMHYSPNISLAFSSVTHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLY 99
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 315001577 100 YGSYLYKE--TWNTGIILLLLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGNTLVQWIWGGFSVDNATLTRFFTF 177
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 315001577 178 H-FLLPFTIIGLAIVHLLFLHETGSNNPM 205
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 254-314 1.49e-07

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 50.56  E-value: 1.49e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 315001577 254 PANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFR 314
Cdd:COG5679   66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPFR 126
petD CHL00058
cytochrome b6/f complex subunit IV
 254-314 1.86e-07

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 50.39  E-value: 1.86e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 315001577 254 PANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFR 314
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFR 125
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 254-314 9.10e-07

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 48.25  E-value: 9.10e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 315001577  254 PANPLSTPPHIKPEWNFLFAYAILRSIPNKLGGVLALLFSILVLFMMPILHTSKQRSTMFR 314
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFR 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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