NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|313850994|ref|NP_001186390|]
View 

programmed cell death protein 2 isoform 3 [Homo sapiens]

Protein Classification

zinc finger MYND domain-containing protein( domain architecture ID 10484396)

MYND (myeloid-Nervy-DEAF-1) domain-containing protein, defined by a C6HC zinc-chelating motif, does not bind DNA, but instead mediates interactions with other proteins

CATH:  3.30.60.180
Gene Ontology:  GO:0045892|GO:0008270|GO:0005515
PubMed:  19925420
SCOP:  4000530

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
zf-MYND pfam01753
MYND finger;
135-172 3.00e-08

MYND finger;


:

Pssm-ID: 460312  Cd Length: 39  Bit Score: 48.18  E-value: 3.00e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 313850994  135 CRVCGC--LGPKTCSRCHKAYYCSKEHQTLDWrLGHKQAC 172
Cdd:pfam01753   1 CAVCGKeaLKLLRCSRCKSVYYCSKECQKADW-PYHKKEC 39
 
Name Accession Description Interval E-value
zf-MYND pfam01753
MYND finger;
135-172 3.00e-08

MYND finger;


Pssm-ID: 460312  Cd Length: 39  Bit Score: 48.18  E-value: 3.00e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 313850994  135 CRVCGC--LGPKTCSRCHKAYYCSKEHQTLDWrLGHKQAC 172
Cdd:pfam01753   1 CAVCGKeaLKLLRCSRCKSVYYCSKECQKADW-PYHKKEC 39
 
Name Accession Description Interval E-value
zf-MYND pfam01753
MYND finger;
135-172 3.00e-08

MYND finger;


Pssm-ID: 460312  Cd Length: 39  Bit Score: 48.18  E-value: 3.00e-08
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 313850994  135 CRVCGC--LGPKTCSRCHKAYYCSKEHQTLDWrLGHKQAC 172
Cdd:pfam01753   1 CAVCGKeaLKLLRCSRCKSVYYCSKECQKADW-PYHKKEC 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH