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Conserved domains on  [gi|31282459|gb|AAN61522|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Passerella iliaca]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 7.29e-162

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 455.82  E-value: 7.29e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWC 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   81 TGQWDITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  161 STALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|...
gi 31282459  321 TSITIAMLTTMSIMLLPISPMIL 343
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMIL 343
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 7.29e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 455.82  E-value: 7.29e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWC 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   81 TGQWDITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  161 STALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|...
gi 31282459  321 TSITIAMLTTMSIMLLPISPMIL 343
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMIL 343
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.60e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 7.60e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    23 SNHWITAWMGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    91 HPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPT------LLTTLAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   165 GGWMGLNQTQIRKILAFSSISHLGWMVVII----IYNPKLTLLNFYLYAMMTATVFL-----TLNTIKVFKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 31282459   236 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-298 2.81e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.03  E-value: 2.81e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   6 SLIFVAslLLGTTITISSNHWITAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWcTGQ 83
Cdd:COG1007 106 ALLLFA--TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGS 182

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  84 WDITQLTHPTS------------CLILTSAVAMKLGLVPFHFWFPEVLQGSPlttglllstlmklPPIT----------- 140
Cdd:COG1007 183 LNLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaa 249

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459 141 ------LLYMTSPSLNP---TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTL--LNFYL-- 207
Cdd:COG1007 250 faallrLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLla 329

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459 208 YAMMTATVFLTLNTI-KVFKLSTLMTAW----TKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLI 282
Cdd:COG1007 330 YLFMNLGAFAVILLLsRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIA 409

                       330
                ....*....|....*.
gi 31282459 283 SLLSLLSLFFYLRLAY 298
Cdd:COG1007 410 VLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 6.65e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 6.65e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    14 LLGTTITISSNHWITAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    93 TSCLILT------------SAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLP---PITLLYMTSPS----LNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   154 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLN--FYL--YAMMTATVFLTLNTIKVFK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 31282459   227 ---LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-343 7.29e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 455.82  E-value: 7.29e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWC 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   81 TGQWDITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  161 STALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|...
gi 31282459  321 TSITIAMLTTMSIMLLPISPMIL 343
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMIL 343
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-343 1.03e-134

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 386.85  E-value: 1.03e-134
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWC 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   81 TGQWDITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSlNPTLLTTLAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  161 STALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....
gi 31282459  321 -TSITIAMLTTMSIMLLPISPMIL 343
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAIL 343
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-343 5.85e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 380.04  E-value: 5.85e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWC 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   81 TGQWDITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  161 STALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|...
gi 31282459  321 TSITIAMLTTMSIMLLPISPMIL 343
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTIL 343
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-343 7.37e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 336.43  E-value: 7.37e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWC 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   81 TGQWDITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  161 STALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYCTAITLPPhTTNHMK-QWR-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*
gi 31282459  319 KPTSITIAMLTTMSIMLLPISPMIL 343
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-343 2.34e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 286.86  E-value: 2.34e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWC 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   81 TGQWDITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  161 STALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|...
gi 31282459  321 TSITIAMLTTMSIMLLPISPMIL 343
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLL 343
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 2.38e-78

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 243.68  E-value: 2.38e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWC 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   81 TGQWDITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTTLAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  161 STALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 31282459  321 TSITIAMLTTMSIMLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 1.83e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 181.56  E-value: 1.83e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWc 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   81 tgqwdITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTspsLNPTLLTTLAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  161 STALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYcTAITLPPHTTNHMKQWRTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|...
gi 31282459  321 TSITIaMLTTMSIMLLPISPMIL 343
Cdd:MTH00160 312 SLILN-FLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-298 7.72e-42

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 148.11  E-value: 7.72e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    5 ASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   85 DITqlthptscLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNP-TLLTTLAILSTA 163
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  164 LGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTiKVFKLSTLMTAWTKIPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 31282459  244 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAY 298
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFF 290
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 6-340 3.82e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 146.46  E-value: 3.82e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    6 SLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSmtnawcTGQWD 85
Cdd:MTH00011   8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWS 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   86 ITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTTLAILSTALG 165
Cdd:MTH00011  82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  166 GWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTLMTAWTKIPSLNAMLL 245
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  246 LTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYcTAITLPPHTTNhmkqwRTNKPTSITI 325
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-----LKSAPYEPKT 315

                        330
                 ....*....|....*
gi 31282459  326 AMLTTMSIMLLPISP 340
Cdd:MTH00011 316 KILISMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-302 1.22e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 129.02  E-value: 1.22e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    8 IFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAwctgqwdIT 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   88 QLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLymTSPSLNPTLLTTLAILSTALGGW 167
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  168 MGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMMTATVFLTLNTIKVFKLSTlMTAWTKIPSLNAMLLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 31282459  248 LLSLAG-LPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAYCTAI 302
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 7.60e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 7.60e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    23 SNHWITAWMGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    91 HPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPT------LLTTLAILSTAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   165 GGWMGLNQTQIRKILAFSSISHLGWMVVII----IYNPKLTLLNFYLYAMMTATVFL-----TLNTIKVFKLSTLMTAWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 31282459   236 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 5.19e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 95.48  E-value: 5.19e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   13 LLLGTTITISSNHWITAWMGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   79 WCTGQWDITQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNptLLTTLA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  159 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVII----IYNPKLTLLNFYLYAMMTATVFLTLNTIKVFK--LSTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 31282459  233 AWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-296 9.79e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 95.66  E-value: 9.79e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   14 LLGTTITISSNHWITAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQWDITQLTHP 92
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   93 TS------------CLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKL----PPITLLYMTSPSLNPT---L 153
Cdd:PRK05777 193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  154 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTL--LNFYL--YAMMTATVFLTLNTIK------ 223
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggea 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31282459  224 --VFKLSTLmtAWTKiPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRL 296
Cdd:PRK05777 353 esISDFAGL--SKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 6-298 2.81e-21

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 94.03  E-value: 2.81e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   6 SLIFVAslLLGTTITISSNHWITAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWcTGQ 83
Cdd:COG1007 106 ALLLFA--TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGS 182

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  84 WDITQLTHPTS------------CLILTSAVAMKLGLVPFHFWFPEVLQGSPlttglllstlmklPPIT----------- 140
Cdd:COG1007 183 LNLAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAP-------------TPVTaflatapkiaa 249

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459 141 ------LLYMTSPSLNP---TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTL--LNFYL-- 207
Cdd:COG1007 250 faallrLLVEAFPGLAAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLla 329

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459 208 YAMMTATVFLTLNTI-KVFKLSTLMTAW----TKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLI 282
Cdd:COG1007 330 YLFMNLGAFAVILLLsRKGGEAEEIEDLaglaRRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIA 409

                       330
                ....*....|....*.
gi 31282459 283 SLLSLLSLFFYLRLAY 298
Cdd:COG1007 410 VLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 6.65e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 6.65e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    14 LLGTTITISSNHWITAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    93 TSCLILT------------SAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLP---PITLLYMTSPS----LNPTL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   154 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLN--FYL--YAMMTATVFLTLNTIKVFK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 31282459   227 ---LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-267 9.12e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 86.61  E-value: 9.12e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    4 QASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWCTG 82
Cdd:MTH00199  97 QSSPILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTG 176

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   83 QWDI----TQLTHPTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTtlA 158
Cdd:MTH00199 177 ETSIqginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--A 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  159 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMV--VIIIYNPKL--TLLNFYLYAMMTATVFLTLNTIKVFK--LSTLMT 232
Cdd:MTH00199 255 VLSIIYGAIGALNQTKIKRLLAYSGIGHMGFILfgVAIGSFESIqaSLIYMIIYVIMSICSFSIILSLKLTKglIVEVSG 334

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 31282459  233 AWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 335 LSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 1.17e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 74.90  E-value: 1.17e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    3 PQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   74 SMTNAWCTGQ----WDITQLTHPTS----------CLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  140 TLLymTSPSLNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLYAMM-------T 212
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsalaS 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 31282459  213 ATVFLTL------------------NTIKVFKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
ndhB CHL00049
NADH dehydrogenase subunit 2
 1-208 5.48e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.57  E-value: 5.48e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    1 MNPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHP-RAIEAATKYFLTQAAASALVL--FSsmtn 77
Cdd:CHL00049 108 MAITEFLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS---- 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   78 aWCTGQ-------WDI------TQLTHPTSCLI----LTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPIT 140
Cdd:CHL00049 184 -WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASA 262

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  141 L----LYMTSPSLNP---TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIII-------YNPKLTLLNFY 206
Cdd:CHL00049 263 LatriFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFY 342


                 ..
gi 31282459  207 LY 208
Cdd:CHL00049 343 IF 344
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-268 1.47e-11

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 65.17  E-value: 1.47e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  13 LLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQWDITQLTH- 91
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  92 ---------PTSCLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLM-KLPP------ITLLYMTSPSLNP-TLL 154
Cdd:COG0651 196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459 155 TTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLY----AMMTATVFLTLNTIKV----FK 226
Cdd:COG0651 276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERatgtRD 355

                       250       260       270       280
                ....*....|....*....|....*....|....*....|..
gi 31282459 227 LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:COG0651 356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 3.01e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 64.30  E-value: 3.01e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   50 PRAIEAATKYFLTQAAASALVLF-SSMTNAWCTGQwdiTQL--------THPTSCLILT-----SAVAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  116 PEVLQGSPLTTGLLLSTLMKLP----PITLLYMTSPSLNP---TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 31282459  189 WMVV 192
Cdd:PRK02504 314 FVMI 317
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 9.00e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 50.72  E-value: 9.00e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 31282459   291 FFYLRLAYCTAITLPPHTTNHMKQWRTNKPTSIT-IAMLTTMSIMLLPISP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 1.29e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 53.18  E-value: 1.29e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   33 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFS---------SMTNAWCTGQWDITQLTHPTSCL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  102 VAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLmKLPPITLLY-----MTSPSLNPT----LLTTLAILSTALGGWMGLNQ 172
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPSSISAMLLVI-KQAGLYALArvlfsIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQ 308

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  173 TQIRKILAFSSISHLGWM-----VVIIIY-NPKLT----------LLNFYLYAMMTATVFLT-------LNTIKVFKLST 229
Cdd:PRK08376 309 KDVKRLLAYHSVSQIGYMllglgVGLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNELGG 388

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 31282459  230 LMTawtKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 389 LAR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-279 3.75e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.54  E-value: 3.75e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    2 NPQASLIFVASLLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWCT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   82 GQWDIT-------QLTHPTSCLI----LTSAVAMKLGLVPFHFWFPEVLQGSP------------------LTTGLLLST 132
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDAYSEAPqsfsavlsgqlsklgaygFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  133 LMKLPPITLLYMTSPSLNpTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLT----LLNFYLY 208
Cdd:PRK08668 255 GTKLFSEFGTYRGVPLFN-YILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNH 333

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 31282459  209 AMMTATVFLTLNTI----KVFKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTA 279
Cdd:PRK08668 334 ALFKGLFFLIFAAViyrtGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 1.19e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 50.31  E-value: 1.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   96 LILTSAVAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLL------YMTSPSLNPTLLtTLAILSTALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVL-VLGLATMLLGGWRA 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  170 LNQTQIRKILAFSSISHLGWMVVIIIYNPK------LTLLnfYLYAMMTATVFLTLNTI-------KVFKLSTLmtaWTK 236
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIdhstgtrDIRKLSGL---GRR 360

                        170       180
                 ....*....|....*....|....*..
gi 31282459  237 IPSLNAMLLLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 361 QPVLAVVAALAAASMAGLPPLLGFVAK 387
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 1.36e-06

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 49.69  E-value: 1.36e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  49 HPRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQW--DITQLTH-----PTSCLILTS---AVAMKLGLVPFHFWFPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459 119 LQGSPLTTGLLLSTLM-KLP-------PITLLYMTSPSLNPTLLTtLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008 236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                ..
gi 31282459 191 VV 192
Cdd:COG1008 315 LL 316
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 7-192 3.35e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 45.53  E-value: 3.35e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   7 LIFVASLLLgttiTISSNHWITAWMGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQWD 85
Cdd:COG1009 118 LLFMAAMLG----LVLSDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  86 ITQL-----THPTSCLILTSAVAM------KLGLVPFHFWFPEVLQGsPLttglllstlmklPPITLL----------YM 144
Cdd:COG1009 194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEG-PT------------PVSALLhaatmvkagvYL 260

                       170       180       190       200       210
                ....*....|....*....|....*....|....*....|....*....|....*.
gi 31282459 145 ---TSP--SLNPTLLTTLAI--LSTAL-GGWMGLNQTQIRKILAFSSISHLGWMVV 192
Cdd:COG1009 261 larLSPlfALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFL 316
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-194 3.60e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.52  E-value: 3.60e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   13 LLLGTTITISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWCTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   87 TQLTHPTSCL----ILTSAVAM------KLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPT---- 152
Cdd:PRK08676 191 TELAAHASLLspsvLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 31282459  153 ----LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVII 194
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-194 4.16e-05

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 44.93  E-value: 4.16e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    50 PRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQW----DITQLTHPTSC-----LILTSAVAMKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   120 QGSPLTTGLLLSTLMKLPP-------ITLLYMTSPSLNPtLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVV 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310


                  ..
gi 31282459   193 II 194
Cdd:TIGR01972 311 GI 312
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-268 2.59e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 42.76  E-value: 2.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   95 CLILTSAVAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSP--SLNPTLL---TTLAILSTALGGWMG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALiivTIVGSLTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  170 LNQTQIRKILAFSSISHLGWMVVII-IYNPKLTLLNFYLYAMMTATVFLTLNTI--------KVFKLSTLMTAwtkIPSL 240
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLT 369

                        170       180
                 ....*....|....*....|....*...
gi 31282459  241 NAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020 370 YIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 3.99e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 42.17  E-value: 3.99e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   33 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwCTGQWDITQL--------THPTSCLILTSAVA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  104 MKLGLVPFHFWFPEVLQGSPlttglllstlmklPPITLL------------------------YMTSPSLNpTLLTTLAI 159
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAAP-------------PVVTALlsglvtkvavyaliriyftvfggdFRFALGLG-WLLAVLAL 279

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  160 LSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLN--FYL--YAMMTATVFLTLNTIKVF----KLSTLM 231
Cdd:PRK08375 280 LSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELS 359

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 31282459  232 TAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTATLISLLSLLSLFFYLRLAY 298
Cdd:PRK08375 360 GLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-271 4.46e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.87  E-value: 4.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  105 KLGLvpfHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPTLLTTLAI-----LSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  180 AFSSISHLGWMVVIIIY--NPKLTLLNFYLYAMMTATVFLTLNTI---------KVFKLSTLMTAwtkIPSLNAMLLLTL 248
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLIGS 394

                        170       180
                 ....*....|....*....|...
gi 31282459  249 LSLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00032 395 FSIMGLPYLTGFYSKDLIL-ELT 416
PRK12650 PRK12650
DUF4040 family protein;
98-194 5.84e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 41.95  E-value: 5.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   98 LTSAVAM--------KLGLVPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSL--NPT---LLTTLAILSTAL 164
Cdd:PRK12650 206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALM 285

                         90       100       110
                 ....*....|....*....|....*....|
gi 31282459  165 GGWMGLNQTQIRKILAFSSISHLGWMVVII 194
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-203 8.97e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 40.84  E-value: 8.97e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   55 AATKYFLTQAAASALVLFSSMTNAWCTG-------QWDITQLTHPTSCLILTS---AVAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  124 LTTGLLLSTLMKLPPITLL------YMTSPSLNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317


                 ....*.
gi 31282459  198 PKLTLL 203
Cdd:PRK06473 318 TPLSIL 323
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.06e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.97  E-value: 1.06e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   48 HHPRAIEAATKYFLTQAAASALVLFSSMTNAWCTGQWDITQLTHPTS---------------CLILTSAVAmKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGAAA-KSAQGPFY 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  113 FWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPT-----LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  188 GWMVVIIIYN----PKLTLL--NFYL--YAMMTATVFLTLN-------TIKVFKLSTLMTawtKIPSLNAMLLLTLLSLA 252
Cdd:PRK12649 315 AYLMTMYGYTtyhePGLGVAaaTFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                        250
                 ....*....|.
gi 31282459  253 GLPPLTGFLPK 263
Cdd:PRK12649 392 GIPPLNGFLSK 402
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-191 1.49e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.39  E-value: 1.49e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   52 AIEAATKYFLTQAAASALVLFSSMTNAWCTGQWDITQLTHPTSCLILTSAVAMKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  116 PEVLQGSPLTTGLLLSTLMKLPPITLLYMTSP--SLNPTLLTTLAILSTA---LGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330


                 .
gi 31282459  191 V 191
Cdd:PRK07376 331 V 331
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 1.83e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 39.91  E-value: 1.83e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459    8 IFVASLLLgttiTISSNHWITAWMGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSS----------MTN 77
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   78 AWCTGQW-DITQLTHPTSCLILTSAVAM-------KLGLVPFHFWFPE-----------VLQGSPLTTGLLLSTLMKlpp 138
Cdd:PRK06458 192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYY--- 268

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 31282459  139 ITLLYMTSPSLNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVV 192
Cdd:PRK06458 269 ILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
92-268 2.13e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.93  E-value: 2.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   92 PTSCLILTSAVAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTLMKLPPI-------TLLYMTSPSLNPTLLTTLAILSTAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  165 GGWMGLNQTQIRKILAFSSISHLGWMVV-IIIYNPK-LTLLNFYLY---AMMTATVFLTLNTIKV---FKLSTLMTAWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLgLALGTPAgINGAIFYLVhdmVVKTALFLIAGSLVRLtgyRSLQYLGGLYRK 365

                        170       180       190
                 ....*....|....*....|....*....|..
gi 31282459  237 IPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 142-267 2.23e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 39.72  E-value: 2.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  142 LYMTSPSLNpTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYNPKLTLLNFYLY----AMMTATVFL 217
Cdd:PRK12662 271 FVFTTLPFN-NVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFM 349

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 31282459  218 TLNTIK----VFKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 350 VSGSISyhfgTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 148-192 2.54e-03

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 39.76  E-value: 2.54e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*...
gi 31282459  148 SLNPTLLTTLAILS--TAL-GGWMGLNQTQIRKILAFSSISHLGWMVV 192
Cdd:PRK06590 275 ELSPEALLFVAIVGavTALfAAFIGLVQTDIKRVLAYSTMSQLGYMFL 322
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-266 2.68e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 39.52  E-value: 2.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  109 VPFHFWFPEVLQGSPLTTGLLLSTLMKLPPITLLYMTSPSLNPT-----LLTTLAILSTALGGWMGLNQTQIRKILAFSS 183
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  184 ISHLGWMVVIIIYNPKLTLLNFYLY----AMMTATVFLTLNTIK-------VFKLSTLmtaWTKIPSLNAMLLLTLLSLA 252
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMA 368

                        170
                 ....*....|....
gi 31282459  253 GLPPLTGFLPKWLI 266
Cdd:PRK12647 369 GLPPLFGFLAKELI 382
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 3.93e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 38.92  E-value: 3.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   55 AATKYFLTQAAASALVLFSSMTNAWCTGQWD------ITQ-LTHPTSCLILTSAV---AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  124 LTTGLLLSTLMKLPPITL------LYMTSPSLNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMVVIIIYN 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  198 PKLTLLN---------------FYLYAMMTATVfltlNTIKVFKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLP 262
Cdd:PRK07363 318 TQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                 ....*.
gi 31282459  263 KWLIIQ 268
Cdd:PRK07363 394 EFIVFQ 399
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 8.71e-03

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 37.87  E-value: 8.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459   50 PRAIEAATKYFLTQAAASALVLFSSMTNAWC----TGQWDITQLTH---PTSCLILT-----SAVAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 31282459  118 VLQGSPLTTGLLLSTLM-KLPPITLLYMTSPsLNP-------TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGW 189
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ....*
gi 31282459  190 MVVII 194
Cdd:PRK05846 316 VTLGI 320
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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