NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|312261217|ref|NP_001185967|]
View 

serine incorporator 2 isoform 4 [Homo sapiens]

Protein Classification

serine incorporator domain-containing protein( domain architecture ID 10505724)

serine incorporator domain-containing protein similar to Homo sapiens serine incorporators that may incorporate serine into membranes and facilitate the synthesis of serine-derived lipids such as phosphatidylserine, and to Saccharomyces cerevisiae membrane protein TMS1

Gene Ontology:  GO:0016020
PubMed:  16120614|31907454

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Serinc pfam03348
Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which ...
 24-461 2.01e-180

Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis.


:

Pssm-ID: 460891  Cd Length: 434  Bit Score: 511.34  E-value: 2.01e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217   24 SCLCGSAPC-ILCSCCPASRNSTVSRLIFTFFLFLGVLVSIIMLSPGVESQLYKLPW---VCEEGagiptvlQGHIDCgs 99
Cdd:pfam03348   1 ACCCGSAACsLCCSCCPSCKSSTSTRLAYALLLLLNSLVSWIMLSPWVQKKLKKLSLkwpGCPGG-------KGGGEC-- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  100 lLGYRAVYRMCFATAAFFFFFTLLMLCVSSSRDPRAAIQNGFWFFKFLILVGLTVGAFYIPDGsFTNIWFYFGVVGSFLF 179
Cdd:pfam03348  72 -YGYSAVYRVCFALALFFLLLALLLIGVKSSKDPRAAIQNGFWFFKFLALLGLVVGAFFIPNG-FFTFWGYIGLIGGFLF 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  180 ILIQLVLLIDFAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTePSGCHEGKVFISLNLTFCVCV 259
Cdd:pfam03348 150 ILIQLILLVDFAHSWNESWVEKYEETNSKLWYAALLGSTLLMYALAIALTVLMYIFFT-GSGCGLNKFFISINLILCVIV 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  260 SIAAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALSSIP-EQKCNPHLPTQLGNETvvagpegyetqwwdAPSIVGLII 338
Cdd:pfam03348 229 SVVSILPKVQEANPRSGLLQSSVVSLYCTYLTWSALSSEPdDKNCNPLLRSSEGTRT--------------ASVVLGAIF 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  339 FLLCTLFISLRSSDHRQVNSLMQTEECPPMLDATQQQQQVAACE--------------GRAFDNEQDGVTYSYSFFHFCL 404
Cdd:pfam03348 295 TFLCVAYSTTRAASNSAVLGLQGSGTTQEGSRDSLRFEALRAAVeegslpasaldddgGKVLDDEKEGVAYSYSFFHFIF 374

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  405 VLASLHVMMTLTNWYKP---GETRKMISTWTAVWVKICASWAGLLLYLWTLVAPLLLRNR 461
Cdd:pfam03348 375 FLASLYVAMLLTNWYSPddaGDFTPVGRSWAAVWVKIVSSWVCYLLYIWTLVAPLVLPDR 434
 
Name Accession Description Interval E-value
Serinc pfam03348
Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which ...
 24-461 2.01e-180

Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis.


Pssm-ID: 460891  Cd Length: 434  Bit Score: 511.34  E-value: 2.01e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217   24 SCLCGSAPC-ILCSCCPASRNSTVSRLIFTFFLFLGVLVSIIMLSPGVESQLYKLPW---VCEEGagiptvlQGHIDCgs 99
Cdd:pfam03348   1 ACCCGSAACsLCCSCCPSCKSSTSTRLAYALLLLLNSLVSWIMLSPWVQKKLKKLSLkwpGCPGG-------KGGGEC-- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  100 lLGYRAVYRMCFATAAFFFFFTLLMLCVSSSRDPRAAIQNGFWFFKFLILVGLTVGAFYIPDGsFTNIWFYFGVVGSFLF 179
Cdd:pfam03348  72 -YGYSAVYRVCFALALFFLLLALLLIGVKSSKDPRAAIQNGFWFFKFLALLGLVVGAFFIPNG-FFTFWGYIGLIGGFLF 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  180 ILIQLVLLIDFAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTePSGCHEGKVFISLNLTFCVCV 259
Cdd:pfam03348 150 ILIQLILLVDFAHSWNESWVEKYEETNSKLWYAALLGSTLLMYALAIALTVLMYIFFT-GSGCGLNKFFISINLILCVIV 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  260 SIAAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALSSIP-EQKCNPHLPTQLGNETvvagpegyetqwwdAPSIVGLII 338
Cdd:pfam03348 229 SVVSILPKVQEANPRSGLLQSSVVSLYCTYLTWSALSSEPdDKNCNPLLRSSEGTRT--------------ASVVLGAIF 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  339 FLLCTLFISLRSSDHRQVNSLMQTEECPPMLDATQQQQQVAACE--------------GRAFDNEQDGVTYSYSFFHFCL 404
Cdd:pfam03348 295 TFLCVAYSTTRAASNSAVLGLQGSGTTQEGSRDSLRFEALRAAVeegslpasaldddgGKVLDDEKEGVAYSYSFFHFIF 374

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  405 VLASLHVMMTLTNWYKP---GETRKMISTWTAVWVKICASWAGLLLYLWTLVAPLLLRNR 461
Cdd:pfam03348 375 FLASLYVAMLLTNWYSPddaGDFTPVGRSWAAVWVKIVSSWVCYLLYIWTLVAPLVLPDR 434
 
Name Accession Description Interval E-value
Serinc pfam03348
Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which ...
 24-461 2.01e-180

Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis.


Pssm-ID: 460891  Cd Length: 434  Bit Score: 511.34  E-value: 2.01e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217   24 SCLCGSAPC-ILCSCCPASRNSTVSRLIFTFFLFLGVLVSIIMLSPGVESQLYKLPW---VCEEGagiptvlQGHIDCgs 99
Cdd:pfam03348   1 ACCCGSAACsLCCSCCPSCKSSTSTRLAYALLLLLNSLVSWIMLSPWVQKKLKKLSLkwpGCPGG-------KGGGEC-- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  100 lLGYRAVYRMCFATAAFFFFFTLLMLCVSSSRDPRAAIQNGFWFFKFLILVGLTVGAFYIPDGsFTNIWFYFGVVGSFLF 179
Cdd:pfam03348  72 -YGYSAVYRVCFALALFFLLLALLLIGVKSSKDPRAAIQNGFWFFKFLALLGLVVGAFFIPNG-FFTFWGYIGLIGGFLF 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  180 ILIQLVLLIDFAHSWNQRWLGKAEECDSRAWYAGLFFFTLLFYLLSIAAVALMFMYYTePSGCHEGKVFISLNLTFCVCV 259
Cdd:pfam03348 150 ILIQLILLVDFAHSWNESWVEKYEETNSKLWYAALLGSTLLMYALAIALTVLMYIFFT-GSGCGLNKFFISINLILCVIV 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  260 SIAAVLPKVQDAQPNSGLLQASVITLYTMFVTWSALSSIP-EQKCNPHLPTQLGNETvvagpegyetqwwdAPSIVGLII 338
Cdd:pfam03348 229 SVVSILPKVQEANPRSGLLQSSVVSLYCTYLTWSALSSEPdDKNCNPLLRSSEGTRT--------------ASVVLGAIF 294

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  339 FLLCTLFISLRSSDHRQVNSLMQTEECPPMLDATQQQQQVAACE--------------GRAFDNEQDGVTYSYSFFHFCL 404
Cdd:pfam03348 295 TFLCVAYSTTRAASNSAVLGLQGSGTTQEGSRDSLRFEALRAAVeegslpasaldddgGKVLDDEKEGVAYSYSFFHFIF 374

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 312261217  405 VLASLHVMMTLTNWYKP---GETRKMISTWTAVWVKICASWAGLLLYLWTLVAPLLLRNR 461
Cdd:pfam03348 375 FLASLYVAMLLTNWYSPddaGDFTPVGRSWAAVWVKIVSSWVCYLLYIWTLVAPLVLPDR 434
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH