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Conserved domains on  [gi|312234606|gb|ADQ54309|]
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NADH dehydrogenase subunit 1, partial (mitochondrion) [Madracis pharensis]

Protein Classification

complex I subunit 1 family protein( domain architecture ID 103)

complex I subunit 1 family protein similar to NADH dehydrogenase subunit 1, which is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

EC:  7.1.1.-
Gene Ontology:  GO:0016655|GO:0016020
PubMed:  23417064|24059520
SCOP:  4005664

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06076 super family cl00469
NADH-quinone oxidoreductase subunit NuoH;
1-146 3.53e-69

NADH-quinone oxidoreductase subunit NuoH;


The actual alignment was detected with superfamily member MTH00216:

Pssm-ID: 469782  Cd Length: 327  Bit Score: 211.52  E-value: 3.53e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606   1 MWFTFFYLIKSIIIIIPLLIAVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAP 79
Cdd:MTH00216   2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGvYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312234606  80 VISFTLAFFVWGFIPYEKGVSISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00216  82 VLSFTLALIVWGVIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMI 148
 
Name Accession Description Interval E-value
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-146 3.53e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 211.52  E-value: 3.53e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606   1 MWFTFFYLIKSIIIIIPLLIAVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAP 79
Cdd:MTH00216   2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGvYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312234606  80 VISFTLAFFVWGFIPYEKGVSISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00216  82 VLSFTLALIVWGVIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMI 148
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 21-146 2.39e-52

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 168.39  E-value: 2.39e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEKGV 99
Cdd:COG1005   25 LAAYLTWAERKVLARMQDRIGPNRVGpFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFGPGL 104

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:COG1005  105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMI 151
NADHdh pfam00146
NADH dehydrogenase;
21-146 1.75e-51

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 165.34  E-value: 1.75e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606   21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEKGV 99
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGpFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 312234606  100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:pfam00146  92 VLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMI 138
 
Name Accession Description Interval E-value
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-146 3.53e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 211.52  E-value: 3.53e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606   1 MWFTFFYLIKSIIIIIPLLIAVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAP 79
Cdd:MTH00216   2 MVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGvYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAP 81

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 312234606  80 VISFTLAFFVWGFIPYEKGVSISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00216  82 VLSFTLALIVWGVIPYERGVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMI 148
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 21-146 9.17e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 182.23  E-value: 9.17e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEKGV 99
Cdd:MTH00054  18 SIAYLTLAERKVLGYIQCRKGPNVVGvYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPYGEGV 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00054  98 VLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMI 144
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 21-146 2.39e-52

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 168.39  E-value: 2.39e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEKGV 99
Cdd:COG1005   25 LAAYLTWAERKVLARMQDRIGPNRVGpFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFGPGL 104

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:COG1005  105 VLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMI 151
NADHdh pfam00146
NADH dehydrogenase;
21-146 1.75e-51

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 165.34  E-value: 1.75e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606   21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEKGV 99
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGpFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 312234606  100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:pfam00146  92 VLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMI 138
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 21-146 3.67e-51

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 165.07  E-value: 3.67e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVGG-GLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWgfIPYEKGV 99
Cdd:MTH00111  21 AVAFLTLLERKILGYMQLRKGPNIVGPfGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIW--TPLPMPF 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00111  99 PLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTI 145
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 21-146 5.42e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 162.10  E-value: 5.42e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVGG-GLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWgfIPYEKGV 99
Cdd:MTH00071  21 AVAFLTLVERKVLGYMQLRKGPNIVGPmGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIW--TPLPMPN 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00071  99 NLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTI 145
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 21-146 2.96e-49

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 160.16  E-value: 2.96e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVGG-GLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEkgV 99
Cdd:MTH00134  22 AVAFLTLLERKVLGYMQLRKGPNIVGPyGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMP--Y 99

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00134 100 PVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTI 146
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 21-146 1.61e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 158.15  E-value: 1.61e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEKgv 99
Cdd:MTH00218  18 AVAFLTLLERKVLGYMQLRKGPNVVGpYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPF-- 95

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00218  96 SLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTI 142
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
22-146 2.11e-48

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 158.05  E-value: 2.11e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  22 VAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEKGVS 100
Cdd:PRK06076  27 VAFLIWFERKVLARMQLRYGPNRVGpFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFGPELV 106

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 312234606 101 ISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:PRK06076 107 IADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMI 152
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 21-146 2.62e-47

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 155.17  E-value: 2.62e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVGG-GLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWgfIPYEKGV 99
Cdd:MTH00104  16 AVAFLTLVERKVLGYMQLRKGPNIVGPyGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMW--IPLPMPY 93

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00104  94 PLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTI 140
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 21-146 4.19e-47

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 154.75  E-value: 4.19e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVGG-GLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYekGV 99
Cdd:MTH00040  20 AVAFLTLVERKVLGYMQFRKGPNVVGPyGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPV--PT 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00040  98 PTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTI 144
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 21-146 3.09e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 151.95  E-value: 3.09e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEkgV 99
Cdd:MTH00143  17 AVAFFTLLERKGLGYFQIRKGPNKVGlMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSY--F 94

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00143  95 SSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTI 141
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 21-146 9.36e-46

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 152.09  E-value: 9.36e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVGG-GLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEKGV 99
Cdd:MTH00029  23 SVAYLTLAERKVLGLMQNRKGPAIVGPwGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDQGV 102

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00029 103 FLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMI 149
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 21-146 5.49e-44

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 146.07  E-value: 5.49e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEkgV 99
Cdd:MTH00193  18 SVAFLTLLERKVLGYIQIRKGPNKVGfMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYL--F 95

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00193  96 NLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTI 142
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 21-146 1.60e-42

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 142.48  E-value: 1.60e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYekGV 99
Cdd:MTH00225  17 SVAFYTLLERKVLGYIQLRKGPNKVGlMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPS--MF 94

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00225  95 SIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTI 141
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 21-146 3.33e-41

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 139.11  E-value: 3.33e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWgfIPYEKGV 99
Cdd:MTH00195  18 AVAFFTLLERKILGYIQLRKGPNKVGpYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILW--VPIPSPF 95

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00195  96 GFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTI 142
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 21-146 4.50e-32

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 115.65  E-value: 4.50e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEKGV 99
Cdd:MTH00010  19 AMAFYTLLERKALGYFQLRKGPNKVGlAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPS 98

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFkiSLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00010  99 FFLKF--SILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTI 143
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 21-146 1.32e-26

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 100.74  E-value: 1.32e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  21 AVAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFVWGFIPYEkgV 99
Cdd:MTH00090  12 AIAFITLYERHLLGSSQNRLGPNKVSfMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYF--F 89

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 312234606 100 SISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:MTH00090  90 DFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSI 136
ndhA CHL00032
NADH dehydrogenase subunit 1
 29-146 5.65e-24

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 95.02  E-value: 5.65e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  29 ERKILGYMQVRKGPNVVGG-GLLQPFADGVKLFIKEMILPHQANKFVYLLAP---VISFTLAFFVwgfIPYEKGVSISDF 104
Cdd:CHL00032  51 EREISAGIQQRIGPEYAGPlGILQALADGTKLLFKEDLLPSRGDIRLFSIGPsiaVISILLSYLV---IPFGYHLVLADL 127

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 312234606 105 KISL-LWIlAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:CHL00032 128 SIGVfLWI-AISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSI 169
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 22-142 6.38e-24

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 93.84  E-value: 6.38e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  22 VAFLTLAERKILGYMQVRKGPNVVG-GGLLQPFADGVKLFIKEMILPHQANKFVYLLAPVISFTLAFFvwGFIPYEKGVS 100
Cdd:MTH00058  18 VAFFILGERKILGYIQLRKGPNKVGiVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVF--YCFIYGSYYS 95

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 312234606 101 ISDFKISLLWILAISSISVYAILMSGWGSRSKYAFLGAIRAA 142
Cdd:MTH00058  96 GSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSA 137
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
30-146 2.73e-08

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 50.95  E-value: 2.73e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 312234606  30 RKILGYMQVRKGPnvvggGLLQPFADGVKLFIKEMILPHQANkFVYLLAPVISFTLAFFVWGFIPYEKGVSISDFKISLL 109
Cdd:COG0650   26 RKVKARLQGRRGP-----PILQPYYDLLKLLRKETVVPETAS-WLFRAAPYVALAAMLLAALLVPVLTTGPPLSFSGDLI 99

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 312234606 110 WILAISSISVYAILMSGWGSRSKYAFLGAIRAAAQMI 146
Cdd:COG0650  100 VLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSA 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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