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Conserved domains on  [gi|311088364|gb|ADP68414|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Lepilemur scottorum]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 558.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 161 TLSTLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088364 241 LFLGTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 558.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 161 TLSTLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088364 241 LFLGTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
6-303 2.85e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 332.52  E-value: 2.85e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364    6 LFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALTM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   86 WAPLPMPHPLV--NLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  164 TLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  244 GTLYKPNMPEtYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:pfam00146 242 GGWLGPFPLP-GLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 6-299 5.78e-101

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 299.74  E-value: 5.78e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   6 LFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALTM 85
Cdd:COG1005   15 ALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  86 WAPLPMPHPLV--NLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:COG1005   95 FAVIPFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLS 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 164 TLITTQE-HLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLF 242
Cdd:COG1005  175 EIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLF 254

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088364 243 LGTLYKPNMPETYTTNFTTK-----ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005  255 LGGWLGPFPILPLGGLPGILwfllkTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 558.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 161 TLSTLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088364 241 LFLGTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 4-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 511.75  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   4 TNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIAL 83
Cdd:MTH00111   9 INPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLAL 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  84 TMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:MTH00111  89 TIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQ 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 164 TLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFL 243
Cdd:MTH00111 169 TLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFL 248

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 311088364 244 GTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00111 249 NPSTLNLPPELFTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 1-317 9.14e-176

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 489.13  E-value: 9.14e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:MTH00071   6 SLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALT 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00071  86 LALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGF 165

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 161 TLSTLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00071 166 SLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTI 245

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 311088364 241 LFLGTLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQ 317
Cdd:MTH00071 246 LFLGSTYNHLQPELSTMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 5-318 5.08e-175

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 487.19  E-value: 5.08e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   5 NLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALT 84
Cdd:MTH00134  11 NPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  85 MWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLST 164
Cdd:MTH00134  91 LWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQT 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 165 LITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFLG 244
Cdd:MTH00134 171 FNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLG 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 311088364 245 TLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPPQM 318
Cdd:MTH00134 251 ASHIPTLPELTTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 5-316 1.73e-143

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 406.99  E-value: 1.73e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   5 NLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALT 84
Cdd:MTH00218   7 NLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  85 MWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLST 164
Cdd:MTH00218  87 LWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 165 LITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFLG 244
Cdd:MTH00218 167 FNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLG 246

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088364 245 TLYKpnmpetyTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPP 316
Cdd:MTH00218 247 TSLT-------TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 1-316 7.68e-139

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 395.50  E-value: 7.68e-139
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:MTH00040   5 LFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLF 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00040  85 LALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSF 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 161 TLSTLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00040 165 SLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVI 244

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 311088364 241 LFLG-TLYKPNMPETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPP 316
Cdd:MTH00040 245 LFLGgGSPFNEIFPINIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 8-312 6.14e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 337.10  E-value: 6.14e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   8 LLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALTMWA 87
Cdd:MTH00195  10 IQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWV 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  88 PLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLSTLIT 167
Cdd:MTH00195  90 PIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVI 169

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 168 TQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFLGTly 247
Cdd:MTH00195 170 SQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGG-- 247

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 311088364 248 kpnmpeTYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMS 312
Cdd:MTH00195 248 ------GGTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALN 306
NADHdh pfam00146
NADH dehydrogenase;
6-303 2.85e-114

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 332.52  E-value: 2.85e-114
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364    6 LFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALTM 85
Cdd:pfam00146   2 ILLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   86 WAPLPMPHPLV--NLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:pfam00146  82 FAVIPFGPGLVlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLS 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  164 TLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFL 243
Cdd:pfam00146 162 EIVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFL 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  244 GTLYKPNMPEtYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:pfam00146 242 GGWLGPFPLP-GLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 1-311 4.41e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 324.41  E-value: 4.41e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:MTH00193   3 MMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00193  83 LSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSF 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 161 TLSTLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00193 163 NLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVL 242

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 311088364 241 LFLGTLYKPNMpetyttnFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILM 311
Cdd:MTH00193 243 MFLGGDLLSLL-------FYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 7-302 1.33e-106

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 312.96  E-value: 1.33e-106
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   7 FLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALTMW 86
Cdd:MTH00143   8 VFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLW 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  87 APLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLSTLI 166
Cdd:MTH00143  88 QLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEIS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 167 TTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFLGTL 246
Cdd:MTH00143 168 ESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGS 247

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 311088364 247 YKPNMpeTYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCM 302
Cdd:MTH00143 248 SVLFL--LGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 1-316 2.13e-103

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 305.50  E-value: 2.13e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:MTH00054   3 IIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLT 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPMPHPLV--NLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSG 158
Cdd:MTH00054  83 LAFIAWGVIPYGEGVVlsDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 159 SFTLSTLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALT 238
Cdd:MTH00054 163 SLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFG 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 239 TMLFLGTLYKPNMPETYTTNFTTK---ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIP 315
Cdd:MTH00054 243 VILFLGGWLVISGPTSYFSNFVWFgikIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALP 322


                 .
gi 311088364 316 P 316
Cdd:MTH00054 323 P 323
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 1-307 6.64e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 301.18  E-value: 6.64e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:MTH00225   2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00225  82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 161 TLSTLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00225 162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 311088364 241 LFLGTLYkpnmpETYTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISL 307
Cdd:MTH00225 242 LFFGGFF-----VTIDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 6-299 5.78e-101

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 299.74  E-value: 5.78e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   6 LFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALTM 85
Cdd:COG1005   15 ALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  86 WAPLPMPHPLV--NLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:COG1005   95 FAVIPFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLS 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 164 TLITTQE-HLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLF 242
Cdd:COG1005  175 EIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLF 254

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088364 243 LGTLYKPNMPETYTTNFTTK-----ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005  255 LGGWLGPFPILPLGGLPGILwfllkTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 6-316 2.10e-99

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 295.49  E-value: 2.10e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   6 LFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALTM 85
Cdd:MTH00216  12 ILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIV 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  86 WAPLPMPHPLV--NLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:MTH00216  92 WGVIPYERGVLisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSIT 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 164 TLITTQEH-LWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLF 242
Cdd:MTH00216 172 EIVLAQNNgIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILF 251

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 311088364 243 LGTLYKPNMPETYTTNFTTK-ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILMSHIPP 316
Cdd:MTH00216 252 LGGWLSPIKYFKGGAGWFGLkVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
1-303 3.06e-96

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 287.47  E-value: 3.06e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:PRK06076  11 LILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFI 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPM-PH-PLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSG 158
Cdd:PRK06076  91 PAFLAWAVIPFgPElVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAG 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 159 SFTLSTLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALT 238
Cdd:PRK06076 171 SLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALI 250

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088364 239 TMLFLGTLYKPNMPETYTTNFTTKA---LLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:PRK06076 251 TTLFLGGWLPPFPLGGGIPGAIWFVlkvAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 2-311 1.64e-89

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 269.73  E-value: 1.64e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   2 FFTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLI 81
Cdd:MTH00010   5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  82 ALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFT 161
Cdd:MTH00010  85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 162 LSTLITTQeHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTML 241
Cdd:MTH00010 165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088364 242 FLgtlykPNMPETYTTNFTTKALLLTTLFL--WIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPILM 311
Cdd:MTH00010 244 FT-----SFIPSIFISDLMLILKTVFLAFLfiWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 6-316 4.02e-84

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 257.25  E-value: 4.02e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   6 LFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALTM 85
Cdd:MTH00029  13 LLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILA 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  86 WAPLPMPHP--LVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLS 163
Cdd:MTH00029  93 WAIVTMDQGvfLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNIS 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 164 TLITTQEHLWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFL 243
Cdd:MTH00029 173 EIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFL 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 244 GTLYKP--NMPETYTTNFTTKALLLTTLFLWI--------------RASYPRFRYDQLMHLLWKNFLPLTLALCMWHISL 307
Cdd:MTH00029 253 GGWLSPldGIPTPPEAFSIFEQIASSKSSFWFftkssifilffiwsRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGI 332


                 ....*....
gi 311088364 308 PILMSHIPP 316
Cdd:MTH00029 333 LIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 5-298 4.86e-61

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 195.89  E-value: 4.86e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   5 NLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIALT 84
Cdd:MTH00090   1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  85 MWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSFTLSt 164
Cdd:MTH00090  81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFV- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 165 litTQEHLWLIIpswpLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTMLFLG 244
Cdd:MTH00090 160 ---SSFSLSLFV----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK 232

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088364 245 TLYkpnmpetyttnftTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00090 233 FSF-------------LMLFLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSL 273
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 1-298 6.26e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 167.79  E-value: 6.26e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   1 MFFTNLFLLIIpIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALL 80
Cdd:MTH00058   3 GLVSGLEGLLI-ILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  81 IALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSF 160
Cdd:MTH00058  82 LVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSY 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 161 TLSTLITTQEHLWLIIPswPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTM 240
Cdd:MTH00058 162 SLVDFYYSGWLSVLLFP--LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSV 239

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 311088364 241 LFLGtlykpnmpetyTTNFTTKALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00058 240 LFFG-----------GGFVSIMLLFHLLFFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
 3-298 5.51e-42

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 148.95  E-value: 5.51e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   3 FTNLFLLIIPIIMAMAFFTLIERKILGYMQLRKGPNTVGPHGLLQPFADAMKLFIKEPLRPLTSSTLLYITSPMLALLIA 82
Cdd:CHL00032  30 LVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISI 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  83 LTMWAPLPMPHPLV--NLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMSGSf 160
Cdd:CHL00032 110 LLSYLVIPFGYHLVlaDLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS- 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 161 tLSTLITTQEHLWLIIPSWPL------TMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMM 234
Cdd:CHL00032 189 -LSTVDIVEAQSKYGFWGWNLwrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVS 267

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 235 NALTTMLFLG--TLYKP--NMPETYTTNFTTKALLLTTLFLW--------------IRASYPRFRYDQLMHLLWKNFLPL 296
Cdd:CHL00032 268 SLFVTVLYLGgwNLSIPyiFIPELFEINKTGGVFGTTIGIFItlaktylflfisitTRWTLPRLRMDQLLNLGWKFLLPI 347


                 ..
gi 311088364 297 TL 298
Cdd:CHL00032 348 SL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
3-303 1.88e-26

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 106.04  E-value: 1.88e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364   3 FTNLFLLIIPIIMAMA---FFTLIERKILGYMQLRKGPntvgphGLLQPFADAMKLFIKEPLRPLTSSTLLYITsPMLAL 79
Cdd:COG0650    1 MMLILLALLQLLLALLlapLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFRAA-PYVAL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364  80 --LIALTMWAPLPMPHPLVNLNTGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSILLMS 157
Cdd:COG0650   74 aaMLLAALLVPVLTTGPPLSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088364 158 GSFTLSTLITTQEH---LWLIIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMM 234
Cdd:COG0650  154 GSTSLSDIVAYQAAhgpLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088364 235 NALTTMLFLGtlykPNMPETYTTNFTTK---ALLLTTLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:COG0650  234 LSLFVNLFLP----WGIALTLLLALLLFllkLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLA 301
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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