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Conserved domains on  [gi|311088294|gb|ADP68349|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Lepilemur ruficaudatus]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 585.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294   1 MFAANLLLLIIPIIVAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALS 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  81 IALTMWTPMPMPFPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 161 TLSTLITTQEYLWLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088294 241 LFLGALYKPNMPETYTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQM 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 585.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294   1 MFAANLLLLIIPIIVAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALS 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  81 IALTMWTPMPMPFPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 161 TLSTLITTQEYLWLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088294 241 LFLGALYKPNMPETYTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQM 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
15-305 2.77e-120

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 347.54  E-value: 2.77e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294   15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPM--P 92
Cdd:pfam00146  11 LAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFgpG 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294   93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYL 172
Cdd:pfam00146  91 LVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGG 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  173 WLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNMP 252
Cdd:pfam00146 171 WFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLGPFPL 250
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 311088294  253 EtYTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYI 305
Cdd:pfam00146 251 P-GLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
15-299 2.70e-110

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 323.24  E-value: 2.70e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPM--P 92
Cdd:COG1005   24 LLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpG 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQE-Y 171
Cdd:COG1005  104 LVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgG 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 172 LWLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNM 251
Cdd:COG1005  184 LWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFP 263
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 311088294 252 PETYTT-----NFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005  264 ILPLGGlpgilWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 585.05  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294   1 MFAANLLLLIIPIIVAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALS 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  81 IALTMWTPMPMPFPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 161 TLSTLITTQEYLWLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 311088294 241 LFLGALYKPNMPETYTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQM 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
15-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 529.85  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFP 94
Cdd:MTH00111  20 IAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFP 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWL 174
Cdd:MTH00111 100 LADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEPLWL 179
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 175 VIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNMPET 254
Cdd:MTH00111 180 IFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLPPEL 259
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 311088294 255 YTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQM 318
Cdd:MTH00111 260 FTINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
16-317 3.71e-180

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 500.30  E-value: 3.71e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFPL 95
Cdd:MTH00071  21 AVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNNL 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  96 INLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWLV 175
Cdd:MTH00071 101 SNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQEFMWLI 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNMPETY 255
Cdd:MTH00071 181 IPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLGSTYNHLQPELS 260
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088294 256 TTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQ 317
Cdd:MTH00071 261 TMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
16-318 1.00e-179

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 499.13  E-value: 1.00e-179
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFPL 95
Cdd:MTH00134  22 AVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMPYPV 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  96 INLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWLV 175
Cdd:MTH00134 102 TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQESIWLL 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNMPETY 255
Cdd:MTH00134 182 LPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIPTLPELT 261
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 311088294 256 TTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPPQM 318
Cdd:MTH00134 262 TINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
15-316 8.47e-145

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 410.07  E-value: 8.47e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFP 94
Cdd:MTH00218  17 LAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFS 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWL 174
Cdd:MTH00218  97 LINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQETIWL 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 175 VIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKpnmpet 254
Cdd:MTH00218 177 LIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGTSLT------ 250
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 311088294 255 yTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00218 251 -TINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
16-316 6.26e-143

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 405.90  E-value: 6.26e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFPL 95
Cdd:MTH00040  20 AVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPT 99
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  96 INLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWLV 175
Cdd:MTH00040 100 LNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQNGSWLL 179
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 176 IPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNmpETY 255
Cdd:MTH00040 180 FPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGGGSPFN--EIF 257
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 311088294 256 TTNFIT---KTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00040 258 PINIIIvgiKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
15-313 1.84e-121

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 350.97  E-value: 1.84e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFP 94
Cdd:MTH00195  17 LAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFG 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWL 174
Cdd:MTH00195  97 FSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFSWV 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 175 VIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGAlykpnmpeT 254
Cdd:MTH00195 177 ILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGG--------G 248
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088294 255 YTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSY 313
Cdd:MTH00195 249 GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
NADHdh pfam00146
NADH dehydrogenase;
15-305 2.77e-120

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 347.54  E-value: 2.77e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294   15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPM--P 92
Cdd:pfam00146  11 LAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFgpG 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294   93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYL 172
Cdd:pfam00146  91 LVLADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGG 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  173 WLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNMP 252
Cdd:pfam00146 171 WFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLGGWLGPFPL 250
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 311088294  253 EtYTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYI 305
Cdd:pfam00146 251 P-GLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
15-311 7.68e-118

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 341.75  E-value: 7.68e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFP 94
Cdd:MTH00193  17 VSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFN 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWL 174
Cdd:MTH00193  97 LISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYIWF 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 175 VIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNMpet 254
Cdd:MTH00193 177 IFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGDLLSLL--- 253
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 311088294 255 yttnFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILM 311
Cdd:MTH00193 254 ----FYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
15-302 3.69e-116

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 337.23  E-value: 3.69e-116
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFP 94
Cdd:MTH00143  16 LAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFS 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWL 174
Cdd:MTH00143  96 SSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWL 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 175 VIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNMpeT 254
Cdd:MTH00143 176 GFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGGSSVLFL--L 253
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 311088294 255 YTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCM 302
Cdd:MTH00143 254 GGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILV 301
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
15-307 7.87e-111

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 323.91  E-value: 7.87e-111
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFP 94
Cdd:MTH00225  16 LSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSMFS 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWL 174
Cdd:MTH00225  96 IYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYFWF 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 175 VIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYkpnmpET 254
Cdd:MTH00225 176 MFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFF-----VT 250
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 311088294 255 YTTNFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISL 307
Cdd:MTH00225 251 IDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLII 303
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
15-299 2.70e-110

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 323.24  E-value: 2.70e-110
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPM--P 92
Cdd:COG1005   24 LLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFgpG 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQE-Y 171
Cdd:COG1005  104 LVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAgG 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 172 LWLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNM 251
Cdd:COG1005  184 LWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGGWLGPFP 263
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 311088294 252 PETYTT-----NFITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLA 299
Cdd:COG1005  264 ILPLGGlpgilWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLV 316
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
15-316 3.17e-107

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 315.51  E-value: 3.17e-107
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPM--P 92
Cdd:MTH00054  17 ISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPYgeG 96
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYL 172
Cdd:MTH00054  97 VVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNI 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 173 WLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNMP 252
Cdd:MTH00054 177 WFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVISGP 256
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 311088294 253 ETYTTNFI---TKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00054 257 TSYFSNFVwfgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
15-316 3.44e-104

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 307.82  E-value: 3.44e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMP-- 92
Cdd:MTH00216  21 IAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYErg 100
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQ-EY 171
Cdd:MTH00216 101 VLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQnNG 180
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 172 LWLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNM 251
Cdd:MTH00216 181 IWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLGGWLSPIK 260
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 311088294 252 PETYTTN-FITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00216 261 YFKGGAGwFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
15-303 6.73e-103

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 304.42  E-value: 6.73e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPM--P 92
Cdd:PRK06076  25 LCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFgpE 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYL 172
Cdd:PRK06076 105 LVIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLS 184
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 173 WLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKPNMP 252
Cdd:PRK06076 185 WNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLGGWLPPFPL 264
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 311088294 253 ETYTTN---FITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMW 303
Cdd:PRK06076 265 GGGIPGaiwFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
15-311 5.31e-95

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 283.98  E-value: 5.31e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFP 94
Cdd:MTH00010  18 LAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHP 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  95 LINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQeYLWL 174
Cdd:MTH00010  98 SFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ-YSWI 176
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 175 VIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLgalykPNMPET 254
Cdd:MTH00010 177 LLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFT-----SFIPSI 251
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 311088294 255 YTTN--FITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILM 311
Cdd:MTH00010 252 FISDlmLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLL 310
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
15-316 7.78e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 264.19  E-value: 7.78e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  15 VAMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMP-- 92
Cdd:MTH00029  22 LSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDqg 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  93 FPLINLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYL 172
Cdd:MTH00029 102 VFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSV 181
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 173 WLVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGALYKP--- 249
Cdd:MTH00029 182 WLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGGWLSPldg 261
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 250 --NMPETYTTN-----------FITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISLPILMSYIPP 316
Cdd:MTH00029 262 ipTPPEAFSIFeqiasskssfwFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
16-307 5.28e-67

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 211.30  E-value: 5.28e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  16 AMAFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFPL 95
Cdd:MTH00090  12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDF 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  96 INLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLStlitTQEYLWLV 175
Cdd:MTH00090  92 LSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFV----SSFSLSLF 167
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 176 IpswpLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGalykpnmpety 255
Cdd:MTH00090 168 V----IYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFK----------- 232
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 311088294 256 tTNFITKTLLLtSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYISL 307
Cdd:MTH00090 233 -FSFLMLFLIF-SLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVL 282
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
18-298 3.02e-50

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 168.56  E-value: 3.02e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  18 AFFTLVERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFPLIN 97
Cdd:MTH00058  19 AFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSY 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  98 LNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQEYLWLVIP 177
Cdd:MTH00058  99 SSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFYYSGWLSVLLFP 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 178 swPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGAlykpnmpeTYTT 257
Cdd:MTH00058 179 --LIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGG--------GFVS 248
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 311088294 258 NFITKTLLltsLFLWIRASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:MTH00058 249 IMLLFHLL---FFMWARATLPRVRYDYFVNFFWEYCLVLLI 286
ndhA CHL00032
NADH dehydrogenase subunit 1
24-298 6.48e-49

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 167.05  E-value: 6.48e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  24 ERKILGYMQLRKGPNTVGPHGLLQPFADAVKLYIKEPLRPLASSTLLYITAPTLALSIALTMWTPMPMPFPLI--NLNMG 101
Cdd:CHL00032  51 EREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVlaDLSIG 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 102 LLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSftLSTLITTQEYLWLVIPSWPL 181
Cdd:CHL00032 131 VFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNS--LSTVDIVEAQSKYGFWGWNL 208
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 182 ------TMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGA-------LYK 248
Cdd:CHL00032 209 wrqpigFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGwnlsipyIFI 288
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 311088294 249 PNMPETY-------TTNFITKTLLLTSLFLWI----RASYPRFRYDQLMHLLWKNFLPLTL 298
Cdd:CHL00032 289 PELFEINktggvfgTTIGIFITLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
19-305 4.34e-32

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 121.06  E-value: 4.34e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  19 FFTLVERKILGYMQLRKGPntvgphGLLQPFADAVKLYIKEPLRPlASSTLLYITAPTLALSIALT--MWTPMPMPFPLI 96
Cdd:COG0650   20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVALAAMLLaaLLVPVLTTGPPL 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294  97 NLNMGLLFILATSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEITLAIILLSVLLMNGSFTLSTLITTQE---YLW 173
Cdd:COG0650   93 SFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVAYQAahgPLL 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 311088294 174 LVIPSWPLTMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIIMMNALTTTLFLGalykPNMPE 253
Cdd:COG0650  173 LSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFLP----WGIAL 248
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 311088294 254 TYTTN---FITKTLLLTSLFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWYI 305
Cdd:COG0650  249 TLLLAlllFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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