|
Name |
Accession |
Description |
Interval |
E-value |
| PRK09641 |
PRK09641 |
RNA polymerase sigma factor SigW; Provisional |
1-187 |
3.72e-106 |
|
RNA polymerase sigma factor SigW; Provisional
Pssm-ID: 182012 [Multi-domain] Cd Length: 187 Bit Score: 302.00 E-value: 3.72e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 1 MDNMESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNL 80
Cdd:PRK09641 1 MDLLIKRLIKQVKKGDQNAFAELVDLYKDKIYQLCYRMLGNRHEAEDAAQEAFIRAYVNIDSYDINRKFSTWLYRIATNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 81 CIDRLRRRKPTYSLDAEMNDQEGVDGYAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISD 160
Cdd:PRK09641 81 TIDRLRKRKPDYYLDAEVAGTEGLTMYSQLAADDALPEEQVVSLELQETIQEAILQLPEKYRTVIVLKYIEDLSLKEISE 160
|
170 180
....*....|....*....|....*..
gi 309249106 161 VLNLPVTTIKTRVHRGRDFLRKKLEHK 187
Cdd:PRK09641 161 ILDLPVGTVKTRIHRGREALRKQLRHL 187
|
|
| SigW_bacill |
TIGR02948 |
RNA polymerase sigma-W factor; This sigma factor is restricted to certain lineages of the ... |
1-186 |
2.79e-80 |
|
RNA polymerase sigma-W factor; This sigma factor is restricted to certain lineages of the order Bacillales.
Pssm-ID: 131993 [Multi-domain] Cd Length: 187 Bit Score: 236.71 E-value: 2.79e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 1 MDNMESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNL 80
Cdd:TIGR02948 1 MDSIIKKRIKEVRKGDENAFADLVDLYKDKIYQLCYRMLGNVHEAEDVAQEAFIRAYTNIDTYDIQRKFSTWLYRIATNL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 81 CIDRLRRRKPTYSLDAEMNDQEGVDGYAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISD 160
Cdd:TIGR02948 81 TIDRLRKRKPDFYLDDEVQGTDGLTMESQLAADEAPPEDQVISLELRDTIQQEIQALPPKYRMVIVLKYMEDLSLKEISE 160
|
170 180
....*....|....*....|....*.
gi 309249106 161 VLNLPVTTIKTRVHRGRDFLRKKLEH 186
Cdd:TIGR02948 161 ILDLPVGTVKTRIHRGREALRKQLRH 186
|
|
| RpoE |
COG1595 |
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; ... |
3-188 |
1.68e-58 |
|
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family [Transcription]; DNA-directed RNA polymerase specialized sigma subunit, sigma24 family is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 441203 [Multi-domain] Cd Length: 181 Bit Score: 181.35 E-value: 1.68e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 3 NMESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCI 82
Cdd:COG1595 2 SSDEELLERLRAGDEAAFEELYERYRPRLYRYARRLLGDRADAEDLVQETFLRLWRKLDSFRGRGSFRAWLYRIARNLAI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 83 DRLRRRKPTYSLDAEMNDQegvdgyamLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVL 162
Cdd:COG1595 82 DHLRKRRRRRELLDELAEE--------LPDEAADPEEALEAEELLEALLAALERLPPRQREVLVLRYLEGLSYAEIAEIL 153
|
170 180
....*....|....*....|....*.
gi 309249106 163 NLPVTTIKTRVHRGRDFLRKKLEHKL 188
Cdd:COG1595 154 GISEGTVKSRLSRARKKLREALEEEG 179
|
|
| PRK09652 |
PRK09652 |
RNA polymerase sigma factor RpoE; Provisional |
9-185 |
1.81e-55 |
|
RNA polymerase sigma factor RpoE; Provisional
Pssm-ID: 236608 [Multi-domain] Cd Length: 182 Bit Score: 173.45 E-value: 1.81e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 9 VRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRR 88
Cdd:PRK09652 1 VERVQRGDRAAFALLVRRYQPRVKRLLSRLTRDPADAEDLVQETFIKAYRALHSFRGGAAFYTWLYRIARNTAINYLRKQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 89 K-PTYSLDAEMNDQEGVDGYAMLaSEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVT 167
Cdd:PRK09652 81 GrRPPASDVDAEEAEDFDLADAL-RDISTPENELLSAELEQRVRAAIESLPEELRTAITLREIEGLSYEEIAEIMGCPIG 159
|
170
....*....|....*...
gi 309249106 168 TIKTRVHRGRDFLRKKLE 185
Cdd:PRK09652 160 TVRSRIFRAREALRAKLQ 177
|
|
| sigma70-ECF |
TIGR02937 |
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the ... |
18-184 |
2.90e-45 |
|
RNA polymerase sigma factor, sigma-70 family; This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Pssm-ID: 274357 [Multi-domain] Cd Length: 158 Bit Score: 146.72 E-value: 2.90e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 18 RAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKptysldae 97
Cdd:TIGR02937 1 EAFEELYERYLPLVYRYARRYLGDDADAEDLVQEAFLKLLEALDRFDPEGSFKAWLFRIARNLILDYLRRKR-------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 98 mNDQEGVDGYAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGR 177
Cdd:TIGR02937 73 -RLRRELDLLEELLDSDPSPEEELEQEEEREALREALEKLPEREREVLVLRYLEGLSYKEIAEILGISVGTVKRRLKRAR 151
|
....*..
gi 309249106 178 DFLRKKL 184
Cdd:TIGR02937 152 KKLRELL 158
|
|
| PRK11924 |
PRK11924 |
RNA polymerase sigma factor; Provisional |
6-187 |
4.86e-45 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183384 [Multi-domain] Cd Length: 179 Bit Score: 146.65 E-value: 4.86e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 6 SRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRL 85
Cdd:PRK11924 1 GQLMPVDATGDKEAFSELFRPHAPDLLRYARRQLGDRALAEDAVQEAFLRAWRKADLFNGKGSARTWLLTIARNVCYDLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 86 RRRKP--TYSLDAEMNDQEgvdgyamlASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLN 163
Cdd:PRK11924 81 RRRRRekAVLSDDALEPEF--------AETAETPEAALLAKDDLARIDRCLDALPVKQREVFLLRYVEGLSYREIAEILG 152
|
170 180
....*....|....*....|....
gi 309249106 164 LPVTTIKTRVHRGRDFLRKKLEHK 187
Cdd:PRK11924 153 VPVGTVKSRLRRARQLLRECLEAQ 176
|
|
| PRK09647 |
PRK09647 |
RNA polymerase sigma factor SigE; Reviewed |
13-187 |
1.17e-39 |
|
RNA polymerase sigma factor SigE; Reviewed
Pssm-ID: 236606 [Multi-domain] Cd Length: 203 Bit Score: 133.76 E-value: 1.17e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 13 QKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGqKFSTWIYRIATNLCIDRLRRRKpTY 92
Cdd:PRK09647 23 DKATMPSWEELVRQHADRVYRLAYRLSGNQHDAEDLTQETFIRVFRSLQNYQPG-TFEGWLHRITTNLFLDMVRRRA-RI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 93 SLDAEMNDqegvdgYAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTR 172
Cdd:PRK09647 101 RMEALPED------YDRVPGDEPNPEQIYHDARLDPDLQAALDSLPPEFRAAVVLCDIEGLSYEEIAATLGVKLGTVRSR 174
|
170
....*....|....*
gi 309249106 173 VHRGRDFLRKKLEHK 187
Cdd:PRK09647 175 IHRGRQQLRAALAAH 189
|
|
| PRK11922 |
PRK11922 |
RNA polymerase sigma factor; Provisional |
5-188 |
5.12e-39 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237024 [Multi-domain] Cd Length: 231 Bit Score: 133.17 E-value: 5.12e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 5 ESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDR 84
Cdd:PRK11922 17 DRELVARVLAGDEAAFEALMRRHNRRLYRTARAILRNDAEAEDVVQEAYLRAFRALGTFRGDASLSTWLSRIVLNEALGR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 85 LRRRKPTYSLDAEMNDQEGVDGYA-MLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLN 163
Cdd:PRK11922 97 LRRRRRLVNLAEMVMASTIAGGERtPLADPAEDPERAAARREIRALLERAIDALPDAFRAVFVLRVVEELSVEETAQALG 176
|
170 180
....*....|....*....|....*
gi 309249106 164 LPVTTIKTRVHRGRDFLRKKLEHKL 188
Cdd:PRK11922 177 LPEETVKTRLHRARRLLRESLAREI 201
|
|
| PRK05602 |
PRK05602 |
RNA polymerase sigma factor; Reviewed |
8-185 |
3.45e-37 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 235530 [Multi-domain] Cd Length: 186 Bit Score: 127.08 E-value: 3.45e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 8 LVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQ-KFSTWIYRIATNLCIDRLR 86
Cdd:PRK05602 10 LLARVAAGDPAAFRVLVARKLPRLLALATRMLGDPAEAEDVAQETFLRIWKQAPSWRPGEaRFDTWLHRVVLNLCYDRLR 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 87 RRK--PTYSLDAEMNDQEGvdgyamlaseeltPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNL 164
Cdd:PRK05602 90 RRRevPVEDAPDVPDPAPG-------------PDAGLEARQRARRVEQALAALPERQREAIVLQYYQGLSNIEAAAVMDI 156
|
170 180
....*....|....*....|.
gi 309249106 165 PVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK05602 157 SVDALESLLARGRRALRAQLA 177
|
|
| algU |
PRK11923 |
RNA polymerase sigma factor AlgU; Provisional |
4-185 |
7.24e-36 |
|
RNA polymerase sigma factor AlgU; Provisional
Pssm-ID: 171347 [Multi-domain] Cd Length: 193 Bit Score: 123.76 E-value: 7.24e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 4 MESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCID 83
Cdd:PRK11923 6 EDQQLVERVQRGDKRAFDLLVLKYQHKILGLIVRFVHDTAEAQDVAQEAFIKAYRALGNFRGDSAFYTWLYRIAINTAKN 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 84 RL--RRRKPTYSlDAEMNDQEGVDGYAMLASEElTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDV 161
Cdd:PRK11923 86 HLvsRGRRPPDS-DVSSEDAEFYDGDHALKDIE-SPERALLRDEIEGTVHRTIQQLPEDLRTALTLREFDGLSYEDIASV 163
|
170 180
....*....|....*....|....
gi 309249106 162 LNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK11923 164 MQCPVGTVRSRIFRAREAIDKALQ 187
|
|
| PRK12513 |
PRK12513 |
RNA polymerase sigma factor; Provisional |
7-184 |
5.56e-33 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183566 [Multi-domain] Cd Length: 194 Bit Score: 116.33 E-value: 5.56e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 7 RLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLR 86
Cdd:PRK12513 15 ALMLRYRAGDAAAFEALYARHRTGLYRFLLRLARDRALAEDIFQETWLRVIRARAQYQPRARFRTWLYQIARNLLIDHWR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 87 RRKPTYSLDAEMNDQEgvdgyAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPV 166
Cdd:PRK12513 95 RHGARQAPSLDADEQL-----HALADDGAAPEQQLSLFRDRRRLQAALETLPDEQREVFLLREHGDLELEEIAELTGVPE 169
|
170
....*....|....*...
gi 309249106 167 TTIKTRVHRGRDFLRKKL 184
Cdd:PRK12513 170 ETVKSRLRYALQKLRELL 187
|
|
| Sig70_famx3 |
TIGR02954 |
RNA polymerase sigma-70 factor, TIGR02954 family; This group of sigma factors are members of ... |
7-185 |
1.21e-32 |
|
RNA polymerase sigma-70 factor, TIGR02954 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.
Pssm-ID: 213752 [Multi-domain] Cd Length: 169 Bit Score: 114.81 E-value: 1.21e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 7 RLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLR 86
Cdd:TIGR02954 5 ELVKKAKRGNKPAFESLIKKHKEKLYKTAFIYVKNEHDALDVIQETVYKAYLSIDKLKHPKYFNTWLTRILINECIDLLK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 87 RRKPTYSLDAEMNDQEGvdgyamlASEELTPEGSTLLsetqalihDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPV 166
Cdd:TIGR02954 85 KKKKVIPFDPNTSIEKG-------ECETHADSRLDLY--------KAIDTLNDKYQTAIILRYYHDLTIKEIAEVMNKPE 149
|
170
....*....|....*....
gi 309249106 167 TTIKTRVHRGRDFLRKKLE 185
Cdd:TIGR02954 150 GTVKTYLHRALKKLKKRLE 168
|
|
| PRK12518 |
PRK12518 |
RNA polymerase sigma factor; Provisional |
8-187 |
7.80e-32 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237124 [Multi-domain] Cd Length: 175 Bit Score: 112.89 E-value: 7.80e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 8 LVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGnRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRR 87
Cdd:PRK12518 1 LILRCQRGDRQSFRQLYRRYQQKVRSTLYQLCG-RELLDDLVQEVFLRVWKGLPKLRNPAYFSTWLYRITWNVATDARRQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 88 RKPTYSLDAEMNDQEgvdgyaMLASEELTPEGSTLlsETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVT 167
Cdd:PRK12518 80 FAQRPSRIQDDSLND------QPSRPSDTPDLMQL--HYQDLVQQGLQTLSLEHRAVLVLHDLEDLPQKEIAEILNIPVG 151
|
170 180
....*....|....*....|
gi 309249106 168 TIKTRVHRGRDFLRKKLEHK 187
Cdd:PRK12518 152 TVKSRLFYARRQLRKFLQQQ 171
|
|
| PRK09415 |
PRK09415 |
RNA polymerase factor sigma C; Reviewed |
22-185 |
7.81e-32 |
|
RNA polymerase factor sigma C; Reviewed
Pssm-ID: 181835 [Multi-domain] Cd Length: 179 Bit Score: 112.92 E-value: 7.81e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 22 ELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRR--RKPTYSLDAEMN 99
Cdd:PRK09415 20 EIMNEYGQEVLQLVYSYVKNKEVAEDLTQEIFVKCYKSLHTYKGKSSLKTWLYRIAINHCKDYLKSwhNKKVIVTEDIFT 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 100 DQEgvdgyamlaSEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDF 179
Cdd:PRK09415 100 YME---------SQKESVEEEVIQNAEDERLASAVMSLPIKYREVIYLFYYEELSIKEIAEVTGVNENTVKTRLKKAKEL 170
|
....*.
gi 309249106 180 LRKKLE 185
Cdd:PRK09415 171 LKKGLE 176
|
|
| PRK09638 |
PRK09638 |
RNA polymerase sigma factor SigY; Reviewed |
5-185 |
1.23e-30 |
|
RNA polymerase sigma factor SigY; Reviewed
Pssm-ID: 182010 [Multi-domain] Cd Length: 176 Bit Score: 109.72 E-value: 1.23e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 5 ESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDR 84
Cdd:PRK09638 5 EKELIQKAKKGDDAALTTLFQQHYSFLYKYLLKLTLDPDLAEDLVQETMLKAIENLSSFQGRSKFSTWLISIASRLYKDH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 85 LRRRK-PTYSLDAEMNDQEGVDGYAMLASEEltpEGSTLLsetqalihDAIDSLPDKYKTIMVLRYLQELSLQEISDVLN 163
Cdd:PRK09638 85 LRKQKrEKLRLQRAKEETLRKEKWEAAIKGA---EWSEML--------DALSKLDPEFRAPVILKHYYGYTYEEIAKMLN 153
|
170 180
....*....|....*....|..
gi 309249106 164 LPVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK09638 154 IPEGTVKSRVHHGIKQLRKEWG 175
|
|
| Sig70_bacteroi1 |
TIGR02985 |
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors ... |
19-184 |
1.42e-30 |
|
RNA polymerase sigma-70 factor, Bacteroides expansion family 1; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Pssm-ID: 274376 [Multi-domain] Cd Length: 161 Bit Score: 109.19 E-value: 1.42e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 19 AFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEM 98
Cdd:TIGR02985 2 AFEQLYRRYYPKLCAFARRYVKDEEDAEDIVQDVFLKLWENRETLEISESIKAYLFTIVKNRCLNYLRHKQVEEKYQEEL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 99 NDQEgvdgyaMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRD 178
Cdd:TIGR02985 82 AEIE------ERELSEADPEEELEAKELEEIIEEAIEKLPEQCREIFILSRFEGLSNKEIAEELGISVKTVEYHITKALK 155
|
....*.
gi 309249106 179 FLRKKL 184
Cdd:TIGR02985 156 FLRKEL 161
|
|
| PRK09643 |
PRK09643 |
RNA polymerase sigma factor SigM; Reviewed |
8-186 |
8.56e-30 |
|
RNA polymerase sigma factor SigM; Reviewed
Pssm-ID: 236604 [Multi-domain] Cd Length: 192 Bit Score: 108.26 E-value: 8.56e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 8 LVRLVQkGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRR 87
Cdd:PRK09643 18 LAAHVA-GDRYAFGELFRRHHRRLWAVARRTSGTREDAADALQDAMLSAHRAAGSFRGDAAVSSWLHRIVVNACLDRLRR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 88 RK--PTYSLDaemnDQEGVDGYAMLASEEltpegstllSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLP 165
Cdd:PRK09643 97 AKarPTVPLD----DVYPVAQLERDPTAR---------VETALAVQRALMRLPVEQRAALVAVDMQGYSVADAARMLGVA 163
|
170 180
....*....|....*....|.
gi 309249106 166 VTTIKTRVHRGRDFLRKKLEH 186
Cdd:PRK09643 164 EGTVKSRCARGRARLAELLGY 184
|
|
| PRK12538 |
PRK12538 |
RNA polymerase sigma factor; Provisional |
5-184 |
1.79e-29 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139048 [Multi-domain] Cd Length: 233 Bit Score: 108.41 E-value: 1.79e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 5 ESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQ-KFSTWIYRIATNLCID 83
Cdd:PRK12538 50 DEELLDRLATDDEAAFRLLVERHIDRAYAIALRIVGNRADAEDVVQDTMLKVWTHRGRWQHGRaKFSTWLYRVVSNRCID 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 84 rLRRRKPTYSLDAEmndQEGVDGyamlaseelTPEGSTLL--SETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDV 161
Cdd:PRK12538 130 -LRRKPRTENVDAV---PEVADG---------KPDAVSVIerNELSDLLEAAMQRLPEQQRIAVILSYHENMSNGEIAEV 196
|
170 180
....*....|....*....|...
gi 309249106 162 LNLPVTTIKTRVHRGRDFLRKKL 184
Cdd:PRK12538 197 MDTTVAAVESLLKRGRQQLRDLL 219
|
|
| PRK12522 |
PRK12522 |
RNA polymerase sigma factor; Provisional |
22-185 |
9.09e-29 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183571 [Multi-domain] Cd Length: 173 Bit Score: 104.95 E-value: 9.09e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 22 ELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEMNDQ 101
Cdd:PRK12522 7 ELIDIYKQQIYSLCYKLAKTKEDAEDIFQETWIKVFSSRHQLSYVENYKKWITTICVRTFYDFYRKKKRWKDRILDLFHK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 102 EgVDGYAMLASEELTPEgSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLR 181
Cdd:PRK12522 87 E-DGGEIEFADDVNISE-EFIQKVEAEMIREVIQLLNEKYKTVLVLYYYEQYSYKEMSEILNIPIGTVKYRLNYAKKQMR 164
|
....
gi 309249106 182 KKLE 185
Cdd:PRK12522 165 EHLE 168
|
|
| PRK12524 |
PRK12524 |
RNA polymerase sigma factor; Provisional |
8-185 |
1.09e-27 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183573 [Multi-domain] Cd Length: 196 Bit Score: 103.05 E-value: 1.09e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 8 LVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQ-KFSTWIYRIATNLCIDRLR 86
Cdd:PRK12524 16 LLVLYANGDPAAARALTLRLAPRALAVATRVLGDRAEAEDVTQEAMLRLWRIAPDWRQGEaRVSTWLYRVVCNLCTDRLR 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 87 R-RKPTYSLDAemnDQEGVDGYAmlASEELTPEGSTLlsetQALiHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLP 165
Cdd:PRK12524 96 RrRRASVDLDD---APEPADAAP--GAEEALIEGDRM----RAL-DAALAALPERQRQAVVLRHIEGLSNPEIAEVMEIG 165
|
170 180
....*....|....*....|
gi 309249106 166 VTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK12524 166 VEAVESLTARGKRALAALLA 185
|
|
| SigM_subfam |
TIGR02950 |
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a ... |
26-185 |
1.33e-26 |
|
RNA polymerase sigma factor, SigM family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937) and is restricted to certain lineages of the order Bacillales. This family encompasses at least two distinct sigma factors as two proteins are found in each of B. anthracis, B. subtilis subsp. subtilis str. 168, and B. lichiniformis (although these are not apparently the same two in each). One of these is designated as SigM in B. subtilis (Swiss_Prot:
Pssm-ID: 274361 [Multi-domain] Cd Length: 154 Bit Score: 99.07 E-value: 1.33e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 26 LYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHgQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEMNDQEGVD 105
Cdd:TIGR02950 3 EYMHDVFRYLYRLTKDKHLAEDLLQETFLKAYIHLHSFKD-SSIKPWLFRIARNAFIDWYRKDKKIQTIDDDAIGDLEQH 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 106 GYAMlaseeltPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:TIGR02950 82 PVES-------PEHHLLIKIEQEEITHHLSRLPENYRTVLILREFKEFSYKEIAELLNLSLAKVKSNLFRARKELKKLLE 154
|
|
| PRK09640 |
PRK09640 |
RNA polymerase sigma factor SigX; Reviewed |
5-184 |
1.22e-25 |
|
RNA polymerase sigma factor SigX; Reviewed
Pssm-ID: 236603 [Multi-domain] Cd Length: 188 Bit Score: 97.32 E-value: 1.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 5 ESRLVRLVQKG---DQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLC 81
Cdd:PRK09640 10 DEELVARVHVElfhVTRAYEELMRRYQRTLFNVCARYLGNDRDADDVCQEVMLKVLYGLKNFEGKSKFKTWLYSITYNEC 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 82 IDRLR-RRKPTYSLDAEMNDQegvdgyAMLASEELTPEGSTLLSETQALIH-DAIDslpdkyKTIMVLRYLQELSLQEIS 159
Cdd:PRK09640 90 ITQYRkERRKRRLMDALSLDP------LEEASEEKAPKPEERGGLDRWLVHvNPID------REILVLRFVAELEFQEIA 157
|
170 180
....*....|....*....|....*
gi 309249106 160 DVLNLPVTTIKTRVHRGRDFLRKKL 184
Cdd:PRK09640 158 DIMHMGLSATKMRYKRALDKLREKF 182
|
|
| SigZ |
TIGR02959 |
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a ... |
26-185 |
1.29e-25 |
|
RNA polymerase sigma factor, SigZ family; This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).
Pssm-ID: 132004 [Multi-domain] Cd Length: 170 Bit Score: 96.67 E-value: 1.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 26 LYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEMNDQEGvd 105
Cdd:TIGR02959 3 EFRSELKAFIKSRVSDASDVEDLLQEVFIKIHRNLPSLKDGQKIQSWLYQIARNTIIDFYRSKSRSVELPESLLAADS-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 106 gyamlaseeltPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:TIGR02959 81 -----------AREETFVKELSQCIPPMIKELPDEYREAIRLTELEGLSQQEIAEKLGLSLSGAKSRVQRGRKKLKELLE 149
|
|
| SigX5 |
TIGR02960 |
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of ... |
15-184 |
4.49e-25 |
|
RNA polymerase sigma-70 factor, TIGR02960 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 132005 [Multi-domain] Cd Length: 324 Bit Score: 98.78 E-value: 4.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 15 GDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRL--RRRKPTy 92
Cdd:TIGR02960 2 VDGAAFTALAEPHRRELLAHCYRMLGSLHEAEDLVQETLLRAWRARDRFEGRSSVRTWLYRIATNACLDALeaRQRRPR- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 93 slDAEMNDQEGVDGYAMLASEELT-------------------PEGSTLLSETQALIH-DAIDSLPDKYKTIMVLRYLQE 152
Cdd:TIGR02960 81 --PVGLGAPSADGTAAASEAAEVTwleplpdltldlddpaaadPSVAAGSRESVRLAFvAAIQYLPPRQRAVLLLRDVLG 158
|
170 180 190
....*....|....*....|....*....|..
gi 309249106 153 LSLQEISDVLNLPVTTIKTRVHRGRDFLRKKL 184
Cdd:TIGR02960 159 WRAAETAELLGTSTASVNSALQRARATLDEVG 190
|
|
| PRK08241 |
PRK08241 |
RNA polymerase subunit sigma-70; |
4-89 |
1.57e-24 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 236196 [Multi-domain] Cd Length: 339 Bit Score: 97.70 E-value: 1.57e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 4 MESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCID 83
Cdd:PRK08241 5 AAAALLARAAAGDRDAFAALVEPHRRELLAHCYRMLGSVHDAEDAVQETLLRAWRGYDRFEGRSSLRTWLYRIATNVCLD 84
|
....*.
gi 309249106 84 RLRRRK 89
Cdd:PRK08241 85 ALEGRA 90
|
|
| PRK09637 |
PRK09637 |
RNA polymerase sigma factor SigZ; Provisional |
41-185 |
3.31e-24 |
|
RNA polymerase sigma factor SigZ; Provisional
Pssm-ID: 236601 [Multi-domain] Cd Length: 181 Bit Score: 93.51 E-value: 3.31e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 41 NRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEmndqegvdgyamLASEELTPEgS 120
Cdd:PRK09637 24 NEADVDDLLQEVLIKTHSNLHSLKDGSSIKSWLYQIANNTIIDFYRKKNRSEELPDD------------LLFEDEERE-E 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 309249106 121 TLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK09637 91 NAKKELAPCLRPFIDALPEKYAEALRLTELEGLSQKEIAEKLGLSLSGAKSRVQRGRVKLKELLE 155
|
|
| SigE-fam_strep |
TIGR02983 |
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors ... |
19-185 |
6.82e-24 |
|
RNA polymerase sigma-70 factor, sigma-E family; This group of similar sigma-70 factors includes the sigE factor from Streptomyces coelicolor. The family appears to include a paralagous expansion in the Streptomycetes lineage, while related Actinomycetales have at most two representatives.
Pssm-ID: 132028 [Multi-domain] Cd Length: 162 Bit Score: 92.07 E-value: 6.82e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 19 AFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEM 98
Cdd:TIGR02983 7 EFTAFVAARYPRLLRTAYLLTGDPHEAEDLVQEALVRTYVRWDRIRDPDAPDAYVRRVLVNLARSRWRRRRLLELPTREL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 99 NDQEGVDGYAMLAseeltpegstllsETQALIhDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRD 178
Cdd:TIGR02983 87 PDAAAPDPAPDVA-------------LRAALA-RALRRLPARQRAVVVLRYYEDLSEAQVAEALGISVGTVKSRLSRALA 152
|
....*..
gi 309249106 179 FLRKKLE 185
Cdd:TIGR02983 153 RLRELLE 159
|
|
| Sigma70_r2 |
pfam04542 |
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. ... |
23-91 |
4.09e-23 |
|
Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime. The aromatic residues of the recognition helix, found at the C-terminus of this domain are though to mediate strand separation, thereby allowing transcription initiation.
Pssm-ID: 427998 [Multi-domain] Cd Length: 71 Bit Score: 87.26 E-value: 4.09e-23
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 309249106 23 LVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDH--GQKFSTWIYRIATNLCIDRLRRRKPT 91
Cdd:pfam04542 1 LVERYLPLVYSLARRYLGDGADAEDLVQEGFLGLWRAIERFDPerGVSFSTWLYTIIRNAIIDYLRKQRRT 71
|
|
| PRK09639 |
PRK09639 |
RNA polymerase sigma factor SigX; Provisional |
20-185 |
6.05e-23 |
|
RNA polymerase sigma factor SigX; Provisional
Pssm-ID: 236602 [Multi-domain] Cd Length: 166 Bit Score: 89.62 E-value: 6.05e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 20 FAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKfsTWIYRIATNLCIDRLRRRKPTYSLDAEMN 99
Cdd:PRK09639 5 FEDLFEQYYPDVVQQIFYIVKDRTQAEDLAQEVFLRLYRSDFKGIENEK--GWLIKSARNVAYNYLRSEKRRRARILGEF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 100 DQEGVDgyamlasEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYlQELSLQEISDVLNLPVTTIKTRVHRGRDF 179
Cdd:PRK09639 83 QWQEVD-------NEPSPEEIWIRKEEITKVQEVLAKMTERDRTVLLLRF-SGYSYKEIAEALGIKESSVGTTLARAKKK 154
|
....*.
gi 309249106 180 LRKKLE 185
Cdd:PRK09639 155 FRKIYE 160
|
|
| PRK12515 |
PRK12515 |
RNA polymerase sigma factor; Provisional |
8-184 |
3.71e-22 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183567 [Multi-domain] Cd Length: 189 Bit Score: 88.25 E-value: 3.71e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 8 LVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRR 87
Cdd:PRK12515 12 LLARIAQGDRTAMQTLYGRHHVRVYRFGLRLVRDEQTAEDLVSEVFLDVWRQAGQFEGRSQVSTWLLSIARFKALSALRR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 88 RKptyslDAEMnDQEGVdgyAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVT 167
Cdd:PRK12515 92 RK-----HEEI-DDEAA---AAIEDGADTPEVALQKSDTSAALRACLAKLSPAHREIIDLVYYHEKSVEEVGEIVGIPES 162
|
170
....*....|....*..
gi 309249106 168 TIKTRVHrgrdFLRKKL 184
Cdd:PRK12515 163 TVKTRMF----YARKKL 175
|
|
| PRK12543 |
PRK12543 |
RNA polymerase sigma factor; Provisional |
15-185 |
6.03e-21 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183582 [Multi-domain] Cd Length: 179 Bit Score: 84.79 E-value: 6.03e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 15 GDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSL 94
Cdd:PRK12543 4 GDQEAFSEIYDVTIQEVYKTVHFLVEDKQDVDDVVNEIYIQLWESLRKYDSNRPFRFWLIGLVIKQIHSWRRKRWRRFRI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 95 DAEMNDQEGVDGYAMlaseeltpEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVH 174
Cdd:PRK12543 84 FEKAEEQRKPVSIDF--------SEDVLSKESNQELIELIHKLPYKLRQVIILRYLHDYSQEEIAQLLQIPIGTVKSRIH 155
|
170
....*....|.
gi 309249106 175 RGRDFLRKKLE 185
Cdd:PRK12543 156 AALKKLRQKEQ 166
|
|
| PRK12519 |
PRK12519 |
RNA polymerase sigma factor; Provisional |
8-184 |
1.13e-20 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237125 [Multi-domain] Cd Length: 194 Bit Score: 84.73 E-value: 1.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 8 LVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNlEKYDHGQ-KFSTWIYRIATNLCIDRLR 86
Cdd:PRK12519 19 LFSALKAGQSAALGVLYDRHAGLVYGLALKILGNSQEAEDLTQEIFLSLWRK-SSYDPKRgSLSSYLLTLTRSRAIDRLR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 87 RRKPTYSLDAEMNDQEGVDGYAMLASEELTpegstlLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPV 166
Cdd:PRK12519 98 SRRSRQRLLERWQQELLGEASEDTPLEQAS------LAERSQRVQTALAQLPESQRQVLELAYYEGLSQSEIAKRLGIPL 171
|
170
....*....|....*...
gi 309249106 167 TTIKTRVHRGRDFLRKKL 184
Cdd:PRK12519 172 GTVKARARQGLLKLRELL 189
|
|
| PRK12533 |
PRK12533 |
RNA polymerase sigma factor; Provisional |
18-177 |
3.54e-20 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237129 [Multi-domain] Cd Length: 216 Bit Score: 83.63 E-value: 3.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 18 RAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYdHGQKFSTWIYRIATNLCIDRLRRRKPTYS--LD 95
Cdd:PRK12533 18 ERFRQLVLPHLDAAYNLARWLCGNASDADDVVQEACMRALRFFDSF-RGDNARPWLLAIVRHTWYSEWRRRANAHEvaAP 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 96 AEMNDQEGVDGYAMLASEeltPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHR 175
Cdd:PRK12533 97 DTLDDADSLDDWQPAGED---PLALLLRAEDVRLVNAALAKLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLAR 173
|
..
gi 309249106 176 GR 177
Cdd:PRK12533 174 AR 175
|
|
| PRK12531 |
PRK12531 |
RNA polymerase sigma factor; Provisional |
12-185 |
5.89e-20 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105726 [Multi-domain] Cd Length: 194 Bit Score: 82.67 E-value: 5.89e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 12 VQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDhGQK--FSTWIYRIATNLCIDRLRRRK 89
Cdd:PRK12531 21 VKSRDKQAFALVFSYYAPKLKQFAMKHVGNEQVAMEMVQETMSTVWQKAHLFD-GQKsaLSTWIYTIIRNLCFDLLRKQK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 90 PTySLDAEMNDQEGVDGYAMLASEELTPEGSTLLSETQALIhdaiDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTI 169
Cdd:PRK12531 100 GK-DLHIHADDIWPSDYYPPDLVDHYSPEQDMLKEQVMKFL----DRLPKAQRDVLQAVYLEELPHQQVAEMFDIPLGTV 174
|
170
....*....|....*.
gi 309249106 170 KTRVHRGRDFLRKKLE 185
Cdd:PRK12531 175 KSRLRLAVEKLRHSMD 190
|
|
| PRK12514 |
PRK12514 |
RNA polymerase sigma factor; Provisional |
6-185 |
1.65e-19 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 105710 [Multi-domain] Cd Length: 179 Bit Score: 81.02 E-value: 1.65e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 6 SRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYD-HGQKFSTWIYRIATNLCIDR 84
Cdd:PRK12514 7 EKLIVRVSLGDRDAFSSLYDATSAKLFGICLRVLKDRSEAEEALQDVYVKIWTKADRFAvSGLSPMTWLITIARNHAIDR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 85 LRRRKPTysldaemndQEGVDGYAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNL 164
Cdd:PRK12514 87 LRARKAV---------AVDIDEAHDLADPSPGPEAEVIAGDEGQRIDACLEELEKDRAAAVRRAYLEGLSYKELAERHDV 157
|
170 180
....*....|....*....|.
gi 309249106 165 PVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK12514 158 PLNTMRTWLRRSLLKLRECLS 178
|
|
| PRK12526 |
PRK12526 |
RNA polymerase sigma factor; Provisional |
8-173 |
1.23e-18 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237127 [Multi-domain] Cd Length: 206 Bit Score: 79.46 E-value: 1.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 8 LVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDhGQK--FSTWIYRIATNLCIDRL 85
Cdd:PRK12526 28 LILVAISRDKQAFTHLFQFFAPKIKRFGIKQLGNEAQANELVQETMSNVWRKAHLYN-GDKgaATTWVYTVMRNAAFDML 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 86 RRRKptysLDAEMNDQEGVDGYA-MLASEELTPEG-STLLSETQALIHdaIDSLPDKYKTIMVLRYLQELSLQEISDVLN 163
Cdd:PRK12526 107 RKIK----AKKEQNLGDDIWPIEqALAESQSESEEfSDHLMDKQILSY--IEKLPEAQQTVVKGVYFQELSQEQLAQQLN 180
|
170
....*....|
gi 309249106 164 LPVTTIKTRV 173
Cdd:PRK12526 181 VPLGTVKSRL 190
|
|
| PRK09644 |
PRK09644 |
RNA polymerase sigma factor SigM; Provisional |
22-181 |
1.65e-18 |
|
RNA polymerase sigma factor SigM; Provisional
Pssm-ID: 170033 [Multi-domain] Cd Length: 165 Bit Score: 78.38 E-value: 1.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 22 ELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHgQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEMNDQ 101
Cdd:PRK09644 5 EIYKMYINDVYRYLFSLTKSHHAAEDLLQETFYRAYIYLEDYDN-QKVKPWLFKVAYHTFIDFVRKEKKVSFVGTDEIEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 102 egvdgyaMLASeelTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLR 181
Cdd:PRK09644 84 -------IQAE---STEEYVVAKNSYEKLIQIIHTLPVIEAQAILLCDVHELTYEEAASVLDLKLNTYKSHLFRGRKRLK 153
|
|
| PRK09645 |
PRK09645 |
ECF RNA polymerase sigma factor SigL; |
21-185 |
2.71e-17 |
|
ECF RNA polymerase sigma factor SigL;
Pssm-ID: 236605 [Multi-domain] Cd Length: 173 Bit Score: 75.12 E-value: 2.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 21 AELVELYKDR---IFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDH-GQKFSTWIYRIATNLCID--RLRR-RKPTYS 93
Cdd:PRK09645 9 ALMRALYDEHaapLWRYALRLTGDRARAEDVVQETLLRAWQHPEVLADtGRSARAWLFTVARNLVIDerRSARaRPVEGG 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 94 LDAEMNDQEGVDGYAMLASEELtpegstllsetqaLIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRV 173
Cdd:PRK09645 89 DDVLGVPEQSAPDEVDRALDRL-------------LVADALAQLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRL 155
|
170
....*....|..
gi 309249106 174 HRGRDFLRKKLE 185
Cdd:PRK09645 156 HYALRALRLALQ 167
|
|
| PRK12517 |
PRK12517 |
RNA polymerase sigma factor; Provisional |
17-185 |
3.56e-16 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183569 [Multi-domain] Cd Length: 188 Bit Score: 72.41 E-value: 3.56e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 17 QRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSlDA 96
Cdd:PRK12517 22 QRRYEALVKALHADIYRYAYWLCKDKHIAEDLVQETFLRAWRSLDSLKDEKAAKAWLITILRRENARRFERKQFDLV-DI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 97 emnDQEGVDGYAMLASEELTpegstllseTQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRG 176
Cdd:PRK12517 101 ---EDDSIEDDASHSSEEEM---------EQEWLRRQIAKLDPEYREPLLLQVIGGFSGEEIAEILDLNKNTVMTRLFRA 168
|
....*....
gi 309249106 177 RDFLRKKLE 185
Cdd:PRK12517 169 RNQLKEALE 177
|
|
| Sig-70_gvs1 |
TIGR02989 |
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma ... |
18-181 |
5.32e-16 |
|
RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family; This group of sigma factors are members of the sigma-70 family (TIGR02937) and are abundantly found in the species Rhodopirellula baltica (11), and Verrucomicrobium spinosum (16) and to a lesser extent in Gemmata obscuriglobus (2).
Pssm-ID: 274379 [Multi-domain] Cd Length: 159 Bit Score: 71.58 E-value: 5.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 18 RAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRrkptYSLDAE 97
Cdd:TIGR02989 1 KAFVRLLTRHERALRAFVRSLVADRDDVDDVLQETFVVAWRKFDQFDPGTNFVAWARGIARNKVLNYRRK----LGRDRL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 98 MNDQEGVDGYAMLASEELTPEGSTllsETQALiHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGR 177
Cdd:TIGR02989 77 VFDDDLLEALAAEAEPTEAERLSD---DRQAL-EGCLEKLPERQRELLDLRYQRGQKATALAEQTGRTVNAVYKALQRIR 152
|
....
gi 309249106 178 DFLR 181
Cdd:TIGR02989 153 VSLR 156
|
|
| PRK12542 |
PRK12542 |
RNA polymerase sigma factor; Provisional |
12-177 |
2.65e-15 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183581 [Multi-domain] Cd Length: 185 Bit Score: 70.47 E-value: 2.65e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 12 VQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYD--HGQKFSTWIYRIATNLCIDRLR--R 87
Cdd:PRK12542 3 VTNNDYEKMEELYELYEQKVYYVAYSILNNIQQAEDAVQETFITLYKNLEKLHslNTQELKRYILRVAKNKAIDSYRknK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 88 RKPTYSLDAEMNDQEGVDgyamlasEELTPEGSTLLSETQalIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVT 167
Cdd:PRK12542 83 RHETFLEEYERESIEAVD-------ENIEEWEKRKMSEVQ--IDTLLKELNESNRQVFKYKVFYNLTYQEISSVMGITEA 153
|
170
....*....|
gi 309249106 168 TIKTRVHRGR 177
Cdd:PRK12542 154 NVRKQFERAR 163
|
|
| PRK06811 |
PRK06811 |
RNA polymerase factor sigma-70; Validated |
1-185 |
3.95e-15 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 180707 [Multi-domain] Cd Length: 189 Bit Score: 69.97 E-value: 3.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 1 MDNMESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHE---AEDLVQETFLRVYRNLEKYDhGQK--FSTWIYR 75
Cdd:PRK06811 1 MKINEDNFIKELKKKNEKALEFIVDTYGNLVKKIVHKVLGTVNYsqlIEECVNDIFLSIWNNIDKFD-EEKgsFKKWIAA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 76 IATNLCIDRLRRRKPTYSLDAEMNDqegvdgyaMLASEELTPEGSTLLSETQALIhDAIDSLPDKYKTIMVLRYLQELSL 155
Cdd:PRK06811 80 ISKYKAIDYKRKLTKNNEIDSIDEF--------ILISEESIENEIILKENKEEIL-KLINDLEKLDREIFIRRYLLGEKI 150
|
170 180 190
....*....|....*....|....*....|
gi 309249106 156 QEISDVLNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK06811 151 EEIAKKLGLTRSAIDNRLSRGRKKLQKNKL 180
|
|
| PRK12534 |
PRK12534 |
RNA polymerase sigma factor; Provisional |
2-185 |
7.53e-14 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183576 [Multi-domain] Cd Length: 187 Bit Score: 66.62 E-value: 7.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 2 DNMESRLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQ-KFSTWIYRIATNL 80
Cdd:PRK12534 9 DDETGRLLTATAGGDRHAFEALYRQTSPKLFGVCLRMIPQRAEAEEVLQDVFTLIWHKAGQFDPSRaRGLTWLAMIARNK 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 81 CIDRLRRRKPTysldaemNDQEGVDGYAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISD 160
Cdd:PRK12534 89 AIDHLRANAPQ-------RRNVALDDAGELRAADASPLERTERASTRRRIDHCLAELEPPRSELIRTAFFEGITYEELAA 161
|
170 180
....*....|....*....|....*
gi 309249106 161 VLNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK12534 162 RTDTPIGTVKSWIRRGLAKLKACLE 186
|
|
| PRK13919 |
PRK13919 |
putative RNA polymerase sigma E protein; Provisional |
8-184 |
7.91e-14 |
|
putative RNA polymerase sigma E protein; Provisional
Pssm-ID: 184395 [Multi-domain] Cd Length: 186 Bit Score: 66.48 E-value: 7.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 8 LVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFS-TWIYRIATNLCIDRLR 86
Cdd:PRK13919 13 LLALVARGEEEALRALFRRYAGAFLALARRMGLDGAAAEDVVQEVFIRVWKKAKEFDPRRGSArAWLLALAHHAAVDHVR 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 87 RR--KPTySLDAEMNDQEGVDgyamLASEELTPEGStlLSETQalIHDAIDSL-PDKYKTIMVLrYLQELSLQEISDVLN 163
Cdd:PRK13919 93 RRaaRPQ-PLEPDEREPEAFD----LPGPGLDEEGH--LDRTR--LGRALKALsPEERRVIEVL-YYQGYTHREAAQLLG 162
|
170 180
....*....|....*....|.
gi 309249106 164 LPVTTIKTRVHRGRDFLRKKL 184
Cdd:PRK13919 163 LPLGTLKTRARRALSRLKEVL 183
|
|
| SigX4 |
TIGR02957 |
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of ... |
22-140 |
9.50e-14 |
|
RNA polymerase sigma-70 factor, TIGR02957 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Pssm-ID: 132002 [Multi-domain] Cd Length: 281 Bit Score: 67.38 E-value: 9.50e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 22 ELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRvyrnLEKYDHGQKFST--WIYRIATNLCIDRL---RRRKPTY---- 92
Cdd:TIGR02957 1 EEFEALRPLLFSLAYRMLGSVADAEDIVQETFLR----WQEADRAQIENPkaYLTKVVTRRCIDVLrsaRARREVYvgpw 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 93 ---SLDAEMND-------QEGVDGYAMLASEELTPEGST--LLSETQALIHDAIDSLPDK 140
Cdd:TIGR02957 77 lpePLLTTSADpaesvelAESLSMAYLLLLERLSPLERAvfVLREVFDYPYEEIASIVGK 136
|
|
| Sigma70_r4 |
cd06171 |
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in ... |
127-181 |
1.28e-13 |
|
Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplasmic stress and pathogenesis. Ec sigmaE SR4 also contacts the -35 element, but recognizes a different consensus (a 7-base-pair GGAACTT). Plant SFs recognize sigma70 type promoters and direct transcription of the major plastid RNA polymerase, plastid-encoded RNA polymerase (PEP).
Pssm-ID: 100119 [Multi-domain] Cd Length: 55 Bit Score: 62.12 E-value: 1.28e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 309249106 127 QALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLR 181
Cdd:cd06171 1 RERLEEALDKLPEREREVILLRFGEGLSYEEIAEILGISRSTVRQRLHRALKKLR 55
|
|
| PRK12511 |
PRK12511 |
RNA polymerase sigma factor; Provisional |
41-181 |
1.37e-13 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237123 [Multi-domain] Cd Length: 182 Bit Score: 65.58 E-value: 1.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 41 NRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEmndqegvdgyAMLASEELTP--- 117
Cdd:PRK12511 27 DSAEAEDLVHDALVRALERRASFRSGGNLRTWLMSILHNAFIDELRRRRVEARRADE----------LAVLADASLPaaq 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 309249106 118 EGSTLLSEtqalIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLR 181
Cdd:PRK12511 97 EHAVRLAQ----IRDAFFDLPEEQRAALHLVAIEGLSYQEAAAVLGIPIGTLMSRIGRARAALR 156
|
|
| PRK09636 |
PRK09636 |
RNA polymerase sigma factor SigJ; Provisional |
21-117 |
2.82e-13 |
|
RNA polymerase sigma factor SigJ; Provisional
Pssm-ID: 236600 [Multi-domain] Cd Length: 293 Bit Score: 66.48 E-value: 2.82e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 21 AELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVY-------RNLEkydhgqkfsTWIYRIATNLCIDRL---RRRKP 90
Cdd:PRK09636 7 AAEFEPLRPHLLSVAYRMLGSVADAEDIVQEAWLRWNnadraqiRDPR---------AWLTRVVTRLCLDRLrsaRHRRE 77
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 309249106 91 TY-----------SLDAEMND---QEGVDGYAMLASEELTP 117
Cdd:PRK09636 78 TYvgpwlpepvveELDDPLEAvvaAEDLSLALMLALERLSP 118
|
|
| PRK07037 |
PRK07037 |
extracytoplasmic-function sigma-70 factor; Validated |
37-185 |
3.85e-13 |
|
extracytoplasmic-function sigma-70 factor; Validated
Pssm-ID: 180803 [Multi-domain] Cd Length: 163 Bit Score: 63.94 E-value: 3.85e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 37 RMLGNRHEAEDLVQETFLRVyRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRkpTYSLDAEMNDQEGVDgyamLASEELT 116
Cdd:PRK07037 17 RIVGCRSRAEDVVQDAFVKL-VEAPNQDAVKQPVAYLFRIVRNLAIDHYRRQ--ALENKYHGDEEDGLD----VPSPEAS 89
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 309249106 117 PEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK07037 90 PEAALINRDTLRHVADALSELPARTRYAFEMYRLHGETQKDIARELGVSPTLVNFMIRDALVHCRKCLD 158
|
|
| PRK12544 |
PRK12544 |
RNA polymerase factor sigma-70; |
39-187 |
4.56e-13 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183583 [Multi-domain] Cd Length: 206 Bit Score: 64.82 E-value: 4.56e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 39 LGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEMNDQEGVDGYAMLASEE---- 114
Cdd:PRK12544 39 LSDLHLAEDAVQEALIGALKNADSFAGRAAFKTWVFAILKNKIIDLLRQKKRHVSASSLLRDEEEEEDFEELFDESghwq 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 115 --------LTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLEH 186
Cdd:PRK12544 119 kderpqawGNPEESLEQEQFWRIFEACLDGLPAKYARVFMMREFIELETNEICHAVDLSVSNLNVLLYRARLRLRECLEN 198
|
.
gi 309249106 187 K 187
Cdd:PRK12544 199 K 199
|
|
| PRK09646 |
PRK09646 |
ECF RNA polymerase sigma factor SigK; |
8-184 |
1.86e-12 |
|
ECF RNA polymerase sigma factor SigK;
Pssm-ID: 182015 [Multi-domain] Cd Length: 194 Bit Score: 62.77 E-value: 1.86e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 8 LVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQ-KFSTWIYRIATNLCIDRLR 86
Cdd:PRK09646 20 LLRRVARGDQDAFAELYDRTSSRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFDPARgSALAWLLTLAHRRAVDRVR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 87 rrkptysldaemNDQEGVDGYAMLASEELTP------EGSTLLSETQAlIHDAIDSLPDKYKTIMVLRYLQELSLQEISD 160
Cdd:PRK09646 100 ------------SEQAASQREVRYGARNVDPafdqvaEEVEARLERER-VRDCLDALTDTQRESVTLAYYGGLTYREVAE 166
|
170 180
....*....|....*....|....
gi 309249106 161 VLNLPVTTIKTRVHRGRDFLRKKL 184
Cdd:PRK09646 167 RLAVPLGTVKTRMRDGLIRLRDCL 190
|
|
| PRK09047 |
PRK09047 |
RNA polymerase factor sigma-70; Validated |
39-187 |
2.01e-12 |
|
RNA polymerase factor sigma-70; Validated
Pssm-ID: 236367 [Multi-domain] Cd Length: 161 Bit Score: 61.91 E-value: 2.01e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 39 LGNRHEAEDLVQETFLRVyrnLEKYdhGQKFST-W---IYRIATNLCIDRLRRRK---------PTYSLDAEMNDQEGVD 105
Cdd:PRK09047 1 VRDDDAALDIVQDAMIKL---AEKY--GDRPAAeWpplFQRILQNRIHDWFRRQKvrntwvslfSSFSDDDDDDDFDPLE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 106 GYAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK09047 76 TLDSADEGAESPADKLERAQVLQLIEEAIQKLPARQREAFLLRYWEDMDVAETAAAMGCSEGSVKTHCSRATHALAKALE 155
|
..
gi 309249106 186 HK 187
Cdd:PRK09047 156 AK 157
|
|
| PRK09642 |
PRK09642 |
RNA polymerase sigma factor; |
24-182 |
2.09e-12 |
|
RNA polymerase sigma factor;
Pssm-ID: 170031 [Multi-domain] Cd Length: 160 Bit Score: 62.04 E-value: 2.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 24 VELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHgQKFSTWIYRIATNLCIDRLRRR-KPTYSLDAEMNDQE 102
Cdd:PRK09642 1 MQTYRHYIFQVIFSILRHEEDAKDVTQEVFVKIHASLPNYQF-RGLKTWMARIATNHAIDYKRKKaRENEELSLCKETEE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 103 GVDGYAMLaseeltpEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRK 182
Cdd:PRK09642 80 NIKSSHNI-------EDLLLTKEQKLLIAQKLRELPENYRDVVLAHYLEEKSYQEIALQEKIEVKTVEMKLYRARKWIKK 152
|
|
| PRK12540 |
PRK12540 |
RNA polymerase sigma factor; Provisional |
30-180 |
2.17e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183579 [Multi-domain] Cd Length: 182 Bit Score: 62.29 E-value: 2.17e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 30 RIFHLSyrMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKptysldAEMNDQEGvdGYAM 109
Cdd:PRK12540 19 RAFAIS--LSGNGDRADDLVQETLLRALANIDSFQPGSNLPAWLFTILRNLFRSDYRKRR------REVEDADG--SYAK 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 309249106 110 LASEELTPEGSTLLSETQAlihdAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFL 180
Cdd:PRK12540 89 TLKSQPGQNAHLEFEEFRA----ALDKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKL 155
|
|
| PRK12541 |
PRK12541 |
RNA polymerase sigma factor; Provisional |
23-185 |
3.35e-12 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183580 [Multi-domain] Cd Length: 161 Bit Score: 61.49 E-value: 3.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 23 LVELYKDRIFHLSYRML---GNRHEAEDLVQETFLRVYRNLEKYDhGQKFSTWIYRIATNLCIDRLRRRKPtysldaemn 99
Cdd:PRK12541 7 LEEIYSEHMQDLFRYLLsltGDSHFAEDLMQETFYRMLVHIDYYK-GEEIRPWLFTIAYNAFIDWYRKEKK--------- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 100 dqegvdgYAMLASEE--LTPEGSTllsETQALIHDAIDS-------LPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIK 170
Cdd:PRK12541 77 -------YKTTTIEEfhLPNVPST---EHEYFIKHEIASwldslssLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVK 146
|
170
....*....|....*
gi 309249106 171 TRVHRGRDFLRKKLE 185
Cdd:PRK12541 147 IELHRGRKETKSIKE 161
|
|
| PRK09649 |
PRK09649 |
RNA polymerase sigma factor SigC; Reviewed |
2-186 |
6.11e-12 |
|
RNA polymerase sigma factor SigC; Reviewed
Pssm-ID: 137458 [Multi-domain] Cd Length: 185 Bit Score: 61.21 E-value: 6.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 2 DNMESRLVRLVQKGDQRAFAELVELYKDRIFH-LSYrmLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNL 80
Cdd:PRK09649 8 DEAVTALALSAAKGNGRALEAFIKATQQDVWRfVAY--LSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARHV 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 81 CIDRLRRrkptysLDAEMNDQEGVDGYAMLASEElTPEGSTLLSETQALIHDaidsLPDKYKTIMVLRYLQELSLQEISD 160
Cdd:PRK09649 86 VADHIRH------VRSRPRTTRGARPEHLIDGDR-HARGFEDLVEVTTMIAD----LTTDQREALLLTQLLGLSYADAAA 154
|
170 180
....*....|....*....|....*.
gi 309249106 161 VLNLPVTTIKTRVHRGRDFLRKKLEH 186
Cdd:PRK09649 155 VCGCPVGTIRSRVARARDALLADAEP 180
|
|
| PRK09648 |
PRK09648 |
RNA polymerase sigma factor ShbA; |
7-186 |
7.13e-12 |
|
RNA polymerase sigma factor ShbA;
Pssm-ID: 236607 [Multi-domain] Cd Length: 189 Bit Score: 61.14 E-value: 7.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 7 RLVRLVQKGDQRAFAELVelykdRIFH---LSY---RMLGNRH---EAEDLVQETFLRVYRNLEKY-DHGQKFSTWIYRI 76
Cdd:PRK09648 13 ALVAEAVAGDRRALREVL-----EIIRplvVRYcraRLGGVERpglSADDVAQEVCLAVITALPRYrDQGRPFLAFVYGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 77 ATNLCIDRLRR--RKPTYSLDaEMNDQEgvdgyamlaSEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELS 154
Cdd:PRK09648 88 AAHKVADAHRAagRDKAVPTE-EVPERP---------SDDAGPEERALRSESSNRMRELLDTLPEKQREILILRVVVGLS 157
|
170 180 190
....*....|....*....|....*....|..
gi 309249106 155 LQEISDVLNLPVTTIKTRVHRGRDFLRKKLEH 186
Cdd:PRK09648 158 AEETAEAVGSTPGAVRVAQHRALARLRAEIEA 189
|
|
| Sig70_famx1 |
TIGR02943 |
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of ... |
21-187 |
1.01e-11 |
|
RNA polymerase sigma-70 factor, TIGR02943 family; This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Pssm-ID: 274359 [Multi-domain] Cd Length: 188 Bit Score: 60.55 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 21 AELVELYKDrIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEMND 100
Cdd:TIGR02943 6 QELEQLRRD-LLRFARLQLRDRDLAEDAVQETLLAALSHRDSFAGRSALKTWLFAILKNKIIDALRAKGREVKVSDLDDE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 101 QEGVDGYAMLA-----------SEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTI 169
Cdd:TIGR02943 85 LDDEAFNALFTqnghwaqhgqpQHWNTPEKQLENKEFWEVFEACLYHLPEQTARVFMMREVLGFESDEICQELEISTSNC 164
|
170
....*....|....*...
gi 309249106 170 KTRVHRGRDFLRKKLEHK 187
Cdd:TIGR02943 165 HVLLYRARLSLRACLSIN 182
|
|
| PRK12516 |
PRK12516 |
RNA polymerase sigma factor; Provisional |
30-185 |
1.03e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183568 [Multi-domain] Cd Length: 187 Bit Score: 60.75 E-value: 1.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 30 RIFHLSyrMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRkptyslDAEMNDQEGVdgyam 109
Cdd:PRK12516 24 RAFAVS--LIGRHDRADDLVQDTIMKAWAKQDHFEVGTNMKAWLFTILRNEFYSQMRKR------GREVQDTDGM----- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 110 lASEELT--PE--GSTLLSETQAlihdAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK12516 91 -FTEQLAvhPSqyGTLDLQDFRA----ALDQLPDDQREAIILVGASGFAYEEAAEICGCAVGTIKSRVNRARQRLQEILQ 165
|
|
| PRK12546 |
PRK12546 |
RNA polymerase sigma factor; Provisional |
14-185 |
1.20e-11 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139055 [Multi-domain] Cd Length: 188 Bit Score: 60.62 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 14 KGDQRAfaELVE-LYKDRIFHLSyrMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKpty 92
Cdd:PRK12546 6 HRDPRD--ELVEhLPALRAFAIS--LTRNVAVADDLVQDTIVKAWTNFDKFQEGTNLRAWLFTILRNTFYSDRRKHK--- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 93 sldAEMNDQEGVdgyaMLASEELTPE--GSTLLSETQAlihdAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIK 170
Cdd:PRK12546 79 ---REVPDPEGV----HAASLAVKPAhdGRLAMSDFRA----AFAQLPDEQREALILVGASGFSYEEAAEMCGVAVGTVK 147
|
170
....*....|....*
gi 309249106 171 TRVHRGRDFLRKKLE 185
Cdd:PRK12546 148 SRANRARARLAELLQ 162
|
|
| Sigma70_r4_2 |
pfam08281 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
130-180 |
2.40e-11 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.
Pssm-ID: 400535 [Multi-domain] Cd Length: 54 Bit Score: 56.31 E-value: 2.40e-11
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 309249106 130 IHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFL 180
Cdd:pfam08281 4 LLRALEELPPRQREVFLLRYLEGLSYAEIAELLGISEGTVKSRLSRARKKL 54
|
|
| PRK12535 |
PRK12535 |
RNA polymerase sigma factor; Provisional |
14-177 |
1.51e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237130 [Multi-domain] Cd Length: 196 Bit Score: 57.60 E-value: 1.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 14 KGDQRAFAELVELYKDRIFHLsYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRR--RKPT 91
Cdd:PRK12535 21 RGDRAALTEFIRETQDDVWRL-LAHLGGHDIADDLTQETYLRVMSALPRFAARSSARTWLLSLARRVWVDNIRHdmARPR 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 92 YSLdAEMNDqegvdgyamLASEELTPEGSTLLSE---TQALihdaIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTT 168
Cdd:PRK12535 100 KSA-TEYED---------AAATTASNETTGSWSEwidVRTL----IDALPPERREALILTQVLGYTYEEAAKIADVRVGT 165
|
....*....
gi 309249106 169 IKTRVHRGR 177
Cdd:PRK12535 166 IRSRVARAR 174
|
|
| PRK12536 |
PRK12536 |
RNA polymerase sigma factor; Provisional |
1-184 |
1.88e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237131 [Multi-domain] Cd Length: 181 Bit Score: 56.98 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 1 MDNMESRLVRLVQK---GDQRAFAE-LVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRI 76
Cdd:PRK12536 1 LSAAEARLRALLLRglaGDAAAYRQfLSELAAHLRGFLRRRLPQLPDEVEDLVQEILLAVHNARHTYRADQPLTAWVHAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 77 ATNLCIDRLRRRKPTYSLDAEMNDQegvdgYAMLASEELTPegstllSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQ 156
Cdd:PRK12536 81 ARYKLMDFLRSRARREALHDPLDDE-----SELFATSDDEA------AEARRDLGKLLEQLPDRQRLPIVHVKLEGLSVA 149
|
170 180
....*....|....*....|....*...
gi 309249106 157 EISDVLNLPVTTIKTRVHRGRDFLRKKL 184
Cdd:PRK12536 150 ETAQLTGLSESAVKVGIHRGLKALAAKI 177
|
|
| PRK12539 |
PRK12539 |
RNA polymerase sigma factor SigF; |
44-176 |
4.50e-10 |
|
RNA polymerase sigma factor SigF;
Pssm-ID: 237132 [Multi-domain] Cd Length: 184 Bit Score: 56.28 E-value: 4.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 44 EAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSlDAEMNDqegvdgyamlaSEELTPEGSTLL 123
Cdd:PRK12539 51 EAEDLVQEALMAIHTRRHTYDPEQPLTPWVYAIARYKLIDHLRRTRASLA-DVPIDD-----------ADELVAHDDHAA 118
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 309249106 124 SETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRG 176
Cdd:PRK12539 119 VESTLDLGRLLARLPEKMRLAIQAVKLEGLSVAEAATRSGMSESAVKVSVHRG 171
|
|
| PRK12530 |
PRK12530 |
RNA polymerase sigma factor; Provisional |
45-188 |
9.94e-10 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237128 [Multi-domain] Cd Length: 189 Bit Score: 55.16 E-value: 9.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 45 AEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSL----DAEMN----DQEGVDGYAMLASEELT 116
Cdd:PRK12530 34 AEDVVQEALVSAYKNADSFKGQSALKTWIFAILKNKIIDLIRYRKRFVNEseliEEDSPnsffDEKGHWKPEYYEPSEWQ 113
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 309249106 117 PEGSTLLSETQALIHDA-IDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLEHKL 188
Cdd:PRK12530 114 EVENTVYKEEFWLIFEAcLNHLPAQQARVFMMREYLELSSEQICQECDISTSNLHVLLYRARLQLQACLSKNW 186
|
|
| PRK12527 |
PRK12527 |
RNA polymerase sigma factor; Reviewed |
27-164 |
1.09e-09 |
|
RNA polymerase sigma factor; Reviewed
Pssm-ID: 171560 [Multi-domain] Cd Length: 159 Bit Score: 54.78 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 27 YKDRIFHLSYRmLGNRHEAEDLVQETFLRVyrnLEKYDHGQ--KFSTWIYRIATNLCIDRLRRRKPTYSLDAEMNDQEgv 104
Cdd:PRK12527 5 YRELVRFLSAR-LGNRQAAEDVAHDAYLRV---LERSSSAQieHPRAFLYRTALNLVVDRHRRHRVRQAEPLEVLDEE-- 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 309249106 105 DGYAmlaseelTPEGSTLLSETQ--ALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNL 164
Cdd:PRK12527 79 ERLH-------SPSPQTRLDLGQrlALLQRALAELPPACRDSFLLRKLEGLSHQQIAEHLGI 133
|
|
| FliA |
COG1191 |
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA ... |
7-164 |
1.20e-09 |
|
DNA-directed RNA polymerase specialized sigma subunit [Transcription]; DNA-directed RNA polymerase specialized sigma subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440804 [Multi-domain] Cd Length: 236 Bit Score: 55.60 E-value: 1.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 7 RLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGN-RHEAEDLVQETFLRVYRNLEKYDHGQ--KFSTW-IYRI------ 76
Cdd:COG1191 4 ELLRRYQEGDEEAREELIEEYLPLVKKIASRLAGRlPAELDDLIQVGLIGLIEAIDRFDPSKgvSFETYaVPRIrgaild 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 77 -----------------ATNLCIDRLRR---RKPT---------------------------YSLDAEMNDQEGVDGYAm 109
Cdd:COG1191 84 ylrdedwvprsvrelarKIEEAIEELEQelgREPTdeeiaeelgisleevqealeaanayqlLSLDEPLEDGDDLLDLL- 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 309249106 110 lasEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNL 164
Cdd:COG1191 163 ---ESGDPEEELEHEELREALAEAIEQLPERERLVLSLYYFEELTLKEIAEVLGV 214
|
|
| PRK12532 |
PRK12532 |
RNA polymerase sigma factor; Provisional |
21-187 |
1.62e-09 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171564 [Multi-domain] Cd Length: 195 Bit Score: 54.94 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 21 AELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRL----RRRKPTYSLDA 96
Cdd:PRK12532 9 AELIESRKLLLHFARLQLPDHPDLAEDLVQETLLSAYSAGDSFQGRALVNSWLFAILKNKIIDALrqigRQRKVFTLLDD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 97 EMNDQE-----GVDGYAMLASEEL---TPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTT 168
Cdd:PRK12532 89 ELLDEAfeshfSQNGHWTPEGQPQhwnTPEKSLNNNEFQKILQSCLYNLPENTARVFTLKEILGFSSDEIQQMCGISTSN 168
|
170
....*....|....*....
gi 309249106 169 IKTRVHRGRDFLRKKLEHK 187
Cdd:PRK12532 169 YHTIMHRARESLRQCLQIK 187
|
|
| PRK12547 |
PRK12547 |
RNA polymerase sigma factor; Provisional |
30-184 |
6.73e-09 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 139056 [Multi-domain] Cd Length: 164 Bit Score: 52.57 E-value: 6.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 30 RIFHLSyrMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKptysldAEMNDQEGVdgyaM 109
Cdd:PRK12547 20 RAFAVS--LSSKHDKAEDLVQDTLMKAWAKQDSFEMGTNLKAWLFTILRNEFYSQMRKRG------REVQDSDGV----F 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 309249106 110 LASEELTPE--GSTLLSETQAlihdAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKL 184
Cdd:PRK12547 88 TARVAVHPAqyGSLDLQDFKK----ALNLLSADQREAIILIGASGFSYEDAAAICGCAVGTIKSRVSRARNRLQELL 160
|
|
| PRK12537 |
PRK12537 |
RNA polymerase sigma factor; Provisional |
14-181 |
7.08e-09 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171568 [Multi-domain] Cd Length: 182 Bit Score: 52.86 E-value: 7.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 14 KGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKFST-WIYRIATNLCIDRLR-RRKPT 91
Cdd:PRK12537 19 RGDRRALQALYQQESARLLGVARRIVRDRALAEDIVHDAFIKIWTGAASFDPARGSARgWIYSVTRHLALNVLRdTRREV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 92 YSLDAEMNDQEGVDGYamlaseeltpeGSTL-LSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIK 170
Cdd:PRK12537 99 VLDDDAEETAQTLHEI-----------IDDFdLWANSGKIHRCLEQLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVK 167
|
170
....*....|.
gi 309249106 171 TRVHRGRDFLR 181
Cdd:PRK12537 168 AWIKRSLKALR 178
|
|
| Sigma70_r4 |
pfam04545 |
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 ... |
133-182 |
8.13e-09 |
|
Sigma-70, region 4; Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Pssm-ID: 461347 [Multi-domain] Cd Length: 50 Bit Score: 49.35 E-value: 8.13e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 309249106 133 AIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRK 182
Cdd:pfam04545 1 ALASLPPRERQVLVLRYGEGLTLEEIGERLGISRERVRQIEKRALRKLRK 50
|
|
| PRK12545 |
PRK12545 |
RNA polymerase factor sigma-70; |
45-187 |
1.60e-08 |
|
RNA polymerase factor sigma-70;
Pssm-ID: 183584 [Multi-domain] Cd Length: 201 Bit Score: 52.27 E-value: 1.60e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 45 AEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYS---LDAEMNDQEGVD--------GYAMLASE 113
Cdd:PRK12545 35 AEDAVQEALAAAWSQAGRFAGQSAHKTWVFGILRNKLIDTLRARQRTVNlsaLDAELDGEALLDrelfkdngHWAAHAKP 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 309249106 114 ELTPEGSTLLSETQ--ALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLEHK 187
Cdd:PRK12545 115 RPWPKPETILQQQQfwTLFETCLDHLPEQIGRVFMMREFLDFEIDDICTELTLTANHCSVLLYRARTRLRTCLSEK 190
|
|
| PRK12512 |
PRK12512 |
RNA polymerase sigma factor; Provisional |
44-184 |
5.92e-08 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 171551 [Multi-domain] Cd Length: 184 Bit Score: 50.08 E-value: 5.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 44 EAEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKptYSLDAEMNDQEGVdgyamLASEELTPEGSTLL 123
Cdd:PRK12512 52 QAEDIVQEILLAVHLKRHTWDPGAPFAPWLFAIARNKLIDALRRRG--RRVFVDIDDFAET-----LPAEPATETLPAGD 124
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 309249106 124 SETQalihdaIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKL 184
Cdd:PRK12512 125 VGRH------LETLPPRQRDVVQSISVEGASIKETAAKLSMSEGAVRVALHRGLAALAAKF 179
|
|
| sigI |
PRK09635 |
RNA polymerase sigma factor SigI; Provisional |
34-177 |
8.28e-08 |
|
RNA polymerase sigma factor SigI; Provisional
Pssm-ID: 182008 [Multi-domain] Cd Length: 290 Bit Score: 50.74 E-value: 8.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 34 LSYRMLGNRHEAEDLVQETFLRVYRNLEKYDHGQKfsTWIYRIATNLCID-----RLRRRKPTyslDAemndQEGVDGYA 108
Cdd:PRK09635 21 LAFRMVGDIGVAEDMVQEAFSRLLRAPVGDIDDER--GWLIVVTSRLCLDhiksaSTRRERPQ---DI----AAWHDGDA 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 309249106 109 MLASEElTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGR 177
Cdd:PRK09635 92 SVSSVD-PADRVTLDDEVRLALLIMLERLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRAR 159
|
|
| RpoD |
COG0568 |
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA ... |
5-164 |
1.36e-07 |
|
DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]; DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 440334 [Multi-domain] Cd Length: 268 Bit Score: 50.05 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 5 ESRLVRLVQKGDQRAFAELVELykdrifHL--------SYRmlgNRH-EAEDLVQEtflrvyRNL------EKYDH--GQ 67
Cdd:COG0568 17 EVELARRIQAGDEEAKRKLVEA------NLrlvvsiakKYQ---GRGlPLLDLIQE------GNLglmkavEKFDPerGF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 68 KFST----WIY--------------RIATNL--CIDRLRR----------RKPTY------------------------- 92
Cdd:COG0568 82 RFSTyatwWIRqaitraiadqwrtiRLPVHMaeTLNKLRRakrqllqelgREPTPeeiaeelgvpeekvremlrlarepv 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 309249106 93 SLDAEMNDQEGVDGYAMLASEE-LTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYL----QELSLQEISDVLNL 164
Cdd:COG0568 162 SLDAPVGDDEDSELGDLLEDEEaPSPEEALEEELLREELREALDTLTEREREILRLRFGlddgEPHTLEEIGKEFGV 238
|
|
| PRK08295 |
PRK08295 |
RNA polymerase sporulation sigma factor SigH; |
1-188 |
4.04e-06 |
|
RNA polymerase sporulation sigma factor SigH;
Pssm-ID: 181361 [Multi-domain] Cd Length: 208 Bit Score: 45.28 E-value: 4.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 1 MDNMES-RLVRLVQKGDQRAFAELVELYKDRIFHLSYRMLGNRHEAEDLVQETFLRVYRNLEKYDhGQKFSTwiYRIATN 79
Cdd:PRK08295 6 YDELEDeELVELARSGDKEALEYLIEKYKNFVRAKARSYFLIGADREDIVQEGMIGLYKAIRDYD-KDKLSS--FKSFAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 80 LCIDR--------LRRRKPT-----YSLDAEMNDQEgVDGYAM---LASEELTPEGSTLLSETQALIHDAI-DSLPDKYK 142
Cdd:PRK08295 83 LCITRqiitaiktANRQKHIplnsyVSLDKPIYDEE-SDRTLLdviSEAKVTDPEELIISKEELEDIEEKIeELLSELEK 161
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 309249106 143 TIMVLrYLQELSLQEISDVLNLPVTTIKTRVHRgrdfLRKKLEHKL 188
Cdd:PRK08295 162 EVLEL-YLDGKSYQEIAEELNRHVKSIDNALQR----VKRKLEKYL 202
|
|
| PRK12529 |
PRK12529 |
RNA polymerase sigma factor; Provisional |
34-176 |
5.62e-06 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 183574 [Multi-domain] Cd Length: 178 Bit Score: 44.54 E-value: 5.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 34 LSYRMLG-NRHEAEDLVQETFLRVY--RNLEKYDHGQKFSTWIYRIATNLCIDRLRRRkptySLDaemndQEGVDGYAML 110
Cdd:PRK12529 30 LAYRLRSwGRGVADDLAHDIFLRILasRDGGQREAIRQPRAYLARIANCVLVSWRRRQ----SLE-----LAWLEALATL 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 309249106 111 A-SEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRG 176
Cdd:PRK12529 101 PePLHPSPEQQSVILETLHEIDALLDTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQA 167
|
|
| PRK06704 |
PRK06704 |
RNA polymerase subunit sigma-70; |
41-185 |
2.22e-05 |
|
RNA polymerase subunit sigma-70;
Pssm-ID: 180663 [Multi-domain] Cd Length: 228 Bit Score: 43.48 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 41 NRHEAEDLVQETFLRVyrnLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLDAEMNDQEgvdgyamlaseeltPEGS 120
Cdd:PRK06704 40 NKWDGEDLAQETVCKV---LQKYSNKDICMTLVYKIARNRWLDQIKSKSVHEKIRDQITFEE--------------PHEK 102
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 309249106 121 tlLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLE 185
Cdd:PRK06704 103 --IADLHEMVGKVLSSLNVQQSAILLLKDVFQYSIADIAKVCSVSEGAVKASLFRSRNRLKTVSE 165
|
|
| PRK07670 |
PRK07670 |
FliA/WhiG family RNA polymerase sigma factor; |
93-185 |
2.96e-05 |
|
FliA/WhiG family RNA polymerase sigma factor;
Pssm-ID: 181075 [Multi-domain] Cd Length: 251 Bit Score: 43.11 E-value: 2.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 93 SLDAEMNDQEGVDGYAMLASEE--LTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIk 170
Cdd:PRK07670 156 SIDEKTHDQDDGENVSVTIRDDktPTPEEKLLKEELIEELAEKIKQLSEKEQLVISLFYKEELTLTEIGQVLNLSTSRI- 234
|
90
....*....|....*.
gi 309249106 171 TRVHRGRDF-LRKKLE 185
Cdd:PRK07670 235 SQIHSKALFkLKKLLE 250
|
|
| fliA |
PRK06986 |
flagellar biosynthesis sigma factor; Validated |
98-164 |
4.96e-05 |
|
flagellar biosynthesis sigma factor; Validated
Pssm-ID: 235901 [Multi-domain] Cd Length: 236 Bit Score: 42.53 E-value: 4.96e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 98 MNDQEGVDGYAMLASEEL---TPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNL 164
Cdd:PRK06986 143 IDELRGEHGDSILVTEDHqdeDPLQQLEDEELREALVEAIESLPEREQLVLSLYYQEELNLKEIGAVLGV 212
|
|
| PRK06288 |
PRK06288 |
RNA polymerase sigma factor WhiG; Reviewed |
111-162 |
9.66e-05 |
|
RNA polymerase sigma factor WhiG; Reviewed
Pssm-ID: 235770 [Multi-domain] Cd Length: 268 Bit Score: 41.60 E-value: 9.66e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 309249106 111 ASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVL 162
Cdd:PRK06288 187 SPAALNPDEIAEREEIKRVIVEAIKTLPEREKKVLILYYYEDLTLKEIGKVL 238
|
|
| PRK12520 |
PRK12520 |
RNA polymerase sigma factor; Provisional |
21-185 |
1.08e-04 |
|
RNA polymerase sigma factor; Provisional
Pssm-ID: 237126 [Multi-domain] Cd Length: 191 Bit Score: 41.26 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 21 AELVELykdRIFHLSYRMLGNRHE--AEDLVQETFLRVYRNLEKYDHGQKFSTWIYRIATNLCIDRLRRRKPTYSLdAEM 98
Cdd:PRK12520 6 AQLEAL---RPHLLRFARLQLRDPalAEDAVSETLLAVLEHPERFAGQSSLKTYLVGILKHKIIDAIRSGRREVRL-SLD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 99 NDQEGVDG------------YAMLASEELTPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPV 166
Cdd:PRK12520 82 DADEQSDDdlfdalfaadghYREPPSDWGDPDAALSRREFFEVLQACVDRLPPRTGRVFMMREWLELETEEICQELQITA 161
|
170
....*....|....*....
gi 309249106 167 TTIKTRVHRGRDFLRKKLE 185
Cdd:PRK12520 162 TNAWVLLYRARMRLRECLD 180
|
|
| PRK09651 |
PRK09651 |
RNA polymerase sigma factor FecI; Provisional |
37-188 |
1.23e-04 |
|
RNA polymerase sigma factor FecI; Provisional
Pssm-ID: 182018 [Multi-domain] Cd Length: 172 Bit Score: 40.95 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 309249106 37 RMLGNRHEAEDLVQETFLRVYRNlEKYDHGQKFSTWIYRIATNLCIDRLRRRkptySLDAEMNDqegvdgyaMLAS--EE 114
Cdd:PRK09651 29 RKLQSAFDADDIAQDTFLRVMVS-ETLSTIRDPRSFLCTIAKRVMVDLFRRN----ALEKAYLE--------MLALmpEG 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 309249106 115 L--TPEGSTLLSETQALIHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDF-LRKKLEHKL 188
Cdd:PRK09651 96 GapSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIAHKLGVSVSSVKKYVAKATEHcLLFRLEYGL 172
|
|
| PRK06930 |
PRK06930 |
positive control sigma-like factor; Validated |
130-188 |
8.30e-03 |
|
positive control sigma-like factor; Validated
Pssm-ID: 180757 [Multi-domain] Cd Length: 170 Bit Score: 35.48 E-value: 8.30e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 309249106 130 IHDAIDSLPDKYKTIMVLRYLQELSLQEISDVLNLPVTTIKTRVHRGRDFLRKKLEHKL 188
Cdd:PRK06930 108 IEDALSVLTEREKEVYLMHRGYGLSYSEIADYLNIKKSTVQSMIERAEKKIARQINESL 166
|
|
| |
