NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|308320445|gb|ADO29657|]
View 

maturase K, partial (plastid) [Shafera platyphylla]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
matK super family cl42950
maturase K
 1-101 9.01e-58

maturase K


The actual alignment was detected with superfamily member CHL00002:

Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 184.72  E-value: 9.01e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308320445   1 FGRIYRNLSHYHSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVFSLTFPRVSSISRR 80
Cdd:CHL00002 404 FGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSLIFPRTSSTSRR 483

                         90       100
                 ....*....|....*....|.
gi 308320445  81 LSRGRIWYLDIICINDLANHE 101
Cdd:CHL00002 484 LYRERIWYLDIICINDLVNHE 504
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-101 9.01e-58

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 184.72  E-value: 9.01e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308320445   1 FGRIYRNLSHYHSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVFSLTFPRVSSISRR 80
Cdd:CHL00002 404 FGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSLIFPRTSSTSRR 483

                         90       100
                 ....*....|....*....|.
gi 308320445  81 LSRGRIWYLDIICINDLANHE 101
Cdd:CHL00002 484 LYRERIWYLDIICINDLVNHE 504
Intron_maturas2 pfam01348
Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase ...
 1-52 6.37e-16

Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.


Pssm-ID: 279664 [Multi-domain]  Cd Length: 140  Bit Score: 67.88  E-value: 6.37e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 308320445    1 FGRIYRNLSHYHSGSSKKKSLY-RVKYILRLSCARTLARKHKS-TVRAFLKRLG 52
Cdd:pfam01348  50 YNAIIRGILNYYSFADNKKRLYtRIYYILRLSCAKTLARKLKLgTVRKVIKKFG 103
 
Name Accession Description Interval E-value
matK CHL00002
maturase K
 1-101 9.01e-58

maturase K


Pssm-ID: 214331 [Multi-domain]  Cd Length: 504  Bit Score: 184.72  E-value: 9.01e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308320445   1 FGRIYRNLSHYHSGSSKKKSLYRVKYILRLSCARTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVFSLTFPRVSSISRR 80
Cdd:CHL00002 404 FGRICRNLSHYYSGSSKKKSLYRIKYILRLSCAKTLARKHKSTVRAFLKRLGSELLEEFFTEEEQVLSLIFPRTSSTSRR 483

                         90       100
                 ....*....|....*....|.
gi 308320445  81 LSRGRIWYLDIICINDLANHE 101
Cdd:CHL00002 484 LYRERIWYLDIICINDLVNHE 504
Intron_maturas2 pfam01348
Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase ...
 1-52 6.37e-16

Type II intron maturase; Group II introns use intron-encoded reverse transcriptase, maturase and DNA endonuclease activities for site-specific insertion into DNA. Although this type of intron is self splicing in vitro they require a maturase protein for splicing in vivo. It has been shown that a specific region of the aI2 intron is needed for the maturase function. This region was found to be conserved in group II introns and called domain X.


Pssm-ID: 279664 [Multi-domain]  Cd Length: 140  Bit Score: 67.88  E-value: 6.37e-16
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 308320445    1 FGRIYRNLSHYHSGSSKKKSLY-RVKYILRLSCARTLARKHKS-TVRAFLKRLG 52
Cdd:pfam01348  50 YNAIIRGILNYYSFADNKKRLYtRIYYILRLSCAKTLARKLKLgTVRKVIKKFG 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH