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Conserved domains on  [gi|308224747|gb|ADO23183|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Cardellina versicolor]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.17e-160

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 452.74  E-value: 1.17e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   1 ANLIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQW 80
Cdd:MTH00112   5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  81 DITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLTTLAVLSTAL 160
Cdd:MTH00112  85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAML 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTNIT 320
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                        330       340
                 ....*....|....*....|..
gi 308224747 321 IAILTSMSVMLLPISPMILTIV 342
Cdd:MTH00112 325 TATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.17e-160

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 452.74  E-value: 1.17e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   1 ANLIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQW 80
Cdd:MTH00112   5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  81 DITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLTTLAVLSTAL 160
Cdd:MTH00112  85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAML 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTNIT 320
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                        330       340
                 ....*....|....*....|..
gi 308224747 321 IAILTSMSVMLLPISPMILTIV 342
Cdd:MTH00112 325 TATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 7.63e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 7.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   19 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQL-----THPASSM 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   93 ILTSAIAM------KLGLVPFHFWFPEVLQGSPLITGLLLSTIMK------LPPMTLLYMTSPSLNPILLTTLAVLSTAL 160
Cdd:pfam00361  81 LLLLFLLIlvgflfKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  161 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYAMMTATIFL-TLNTIKVLKLSTLMTA----WT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 308224747  232 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-294 2.16e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 2.16e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  10 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTRAAASALVLF-SSMTNAwYTGQWDITQL-- 85
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  86 ---THPASSMILTSAIAM-------KLGLVPFHFWFPEVLQGSPLITGLLLSTIMKL----PPMTLLYMTSPSLNP---I 148
Cdd:COG1007  191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 149 LLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YAMMTATIFLTLNTIK----- 219
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 308224747 220 VLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 294
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 1.15e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 1.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   10 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   89 ASSMILT------------SAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLP---PMTLLYMTSPS----LNPIL 149
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  150 LTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YAMMTATIFLTLNTIKVLK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 308224747  223 ---LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLA 293
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 1.17e-160

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 452.74  E-value: 1.17e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   1 ANLIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQW 80
Cdd:MTH00112   5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  81 DITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLTTLAVLSTAL 160
Cdd:MTH00112  85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAML 240
Cdd:MTH00112 165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTNIT 320
Cdd:MTH00112 245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                        330       340
                 ....*....|....*....|..
gi 308224747 321 IAILTSMSVMLLPISPMILTIV 342
Cdd:MTH00112 325 TATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-342 5.68e-137

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 392.63  E-value: 5.68e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   4 IFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDIT 83
Cdd:MTH00135   8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  84 QLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSlNPILLTTLAVLSTALGGW 163
Cdd:MTH00135  88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGW 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 164 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLLT 243
Cdd:MTH00135 167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRT-NKSTNITIA 322
Cdd:MTH00135 247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpSTQLTLPLA 326

                        330       340
                 ....*....|....*....|
gi 308224747 323 ILTSMSVMLLPISPMILTIV 342
Cdd:MTH00135 327 ISTTATLMLLPLTPAILALL 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 4-341 6.08e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 380.04  E-value: 6.08e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   4 IFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDIT 83
Cdd:MTH00070   8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  84 QLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLTTLAVLSTALGGW 163
Cdd:MTH00070  88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGW 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 164 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLLT 243
Cdd:MTH00070 168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTNITIAI 323
Cdd:MTH00070 248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSL 327

                        330
                 ....*....|....*...
gi 308224747 324 LTSMSVMLLPISPMILTI 341
Cdd:MTH00070 328 TIILSLMLLPITPTILNL 345
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 3-341 2.49e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 335.28  E-value: 2.49e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   3 LIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDI 82
Cdd:MTH00105   7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  83 TQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLTTLAVLSTALGG 162
Cdd:MTH00105  87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 163 WMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLL 242
Cdd:MTH00105 167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWR-TNKSTNIT 320
Cdd:MTH00105 247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfENTKPMTL 325

                        330       340
                 ....*....|....*....|.
gi 308224747 321 IAILTSMSVMLLPISPMILTI 341
Cdd:MTH00105 326 LPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 3-341 1.19e-96

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 290.33  E-value: 1.19e-96
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   3 LIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDI 82
Cdd:MTH00200   7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  83 TQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLTTLAVLSTALGG 162
Cdd:MTH00200  87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 163 WMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLL 242
Cdd:MTH00200 167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTNITIA 322
Cdd:MTH00200 247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326

                        330
                 ....*....|....*....
gi 308224747 323 ILTSMSVMLLPISPMILTI 341
Cdd:MTH00200 327 LLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-332 9.90e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 244.45  E-value: 9.90e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   3 LIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDI 82
Cdd:MTH00041   7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  83 TQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLTTLAVLSTALGG 162
Cdd:MTH00041  87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 163 WMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLL 242
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTNITIA 322
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326

                        330
                 ....*....|
gi 308224747 323 ILTSMSVMLL 332
Cdd:MTH00041 327 ILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-341 1.88e-53

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 178.86  E-value: 1.88e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   2 NLIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWytgqwd 81
Cdd:MTH00160   7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------ 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  82 ITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTspsLNPILLTTLAVLSTALG 161
Cdd:MTH00160  81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIG 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 162 GWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAMLL 241
Cdd:MTH00160 158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 242 LTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQwrTNKSTNITI 321
Cdd:MTH00160 238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKK--KKNKFSLIL 315

                        330       340
                 ....*....|....*....|
gi 308224747 322 AILTSMSVMLLPISPMILTI 341
Cdd:MTH00160 316 NFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-332 1.51e-43

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 152.73  E-value: 1.51e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   1 ANLIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQW 80
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  81 DitqlthpaSSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPI-LLTTLAVLSTA 159
Cdd:MTH00144  85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAyLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 160 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTiKVLKLSTLMTAWTKIPSLNAM 239
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 240 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLpphttNHMKQWRTNKSTNI 319
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSS-----SKSKKSNSSKVLNS 310

                        330
                 ....*....|...
gi 308224747 320 TIAILTSMSVMLL 332
Cdd:MTH00144 311 SIISLNLLGGLLF 323
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 3-327 3.08e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 146.85  E-value: 3.08e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   3 LIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSmtnawyTGQWDI 82
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  83 TQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLTTLAVLSTALGG 162
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 163 WMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLL 242
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNhMKQWRTNKSTNITIA 322
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-LKSAPYEPKTKILIS 320


                 ....*
gi 308224747 323 ILTSM 327
Cdd:MTH00011 321 MCTLS 325
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 4-298 1.13e-34

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 129.02  E-value: 1.13e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   4 IFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAwytgqwdIT 83
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SN 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  84 QLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLymTSPSLNPILLTTLAVLSTALGGW 163
Cdd:MTH00197  75 LYLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 164 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKLSTlMTAWTKIPSLNAMLLLT 243
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 308224747 244 LLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTI 298
Cdd:MTH00197 232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 7.63e-25

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 102.01  E-value: 7.63e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   19 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQL-----THPASSM 92
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   93 ILTSAIAM------KLGLVPFHFWFPEVLQGSPLITGLLLSTIMK------LPPMTLLYMTSPSLNPILLTTLAVLSTAL 160
Cdd:pfam00361  81 LLLLFLLIlvgflfKSAQVPFHTWLPDAYEGAPTPVSALLAATLVkaggygLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  161 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYAMMTATIFL-TLNTIKVLKLSTLMTA----WT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 308224747  232 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-294 2.16e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 103.27  E-value: 2.16e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  10 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTRAAASALVLF-SSMTNAwYTGQWDITQL-- 85
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  86 ---THPASSMILTSAIAM-------KLGLVPFHFWFPEVLQGSPLITGLLLSTIMKL----PPMTLLYMTSPSLNP---I 148
Cdd:COG1007  191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 149 LLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YAMMTATIFLTLNTIK----- 219
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 308224747 220 VLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 294
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 9-263 6.05e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.88  E-value: 6.05e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   9 LLLGTTITISSNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTRAAASALVLFS-------------SMTNA 74
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  75 WYTGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLttLA 154
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLI--GG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 155 VLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYAMMTATIFLTLNTIKVLK--LSTLMT 228
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 308224747 229 AWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-263 6.47e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 98.94  E-value: 6.47e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   4 IFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDI 82
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  83 ----TQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNPILLTtlAVLST 158
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 159 ALGGWMGLNQTQIRKILAFSSISHLGW----MAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLK--LSTLMTAWTK 232
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                        250       260       270
                 ....*....|....*....|....*....|.
gi 308224747 233 IPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-292 1.29e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.97  E-value: 1.29e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  10 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQLTHP 88
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  89 ASSMI------------LTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKL----PPMTLLYMTSPSLNP---IL 149
Cdd:PRK05777 193 LADGSgnsllllfglvfLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEdwqQV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 150 LTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YAMMTATIFLTLNTIK-----V 220
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 308224747 221 LKLSTL-MTAWTKiPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRL 292
Cdd:PRK05777 353 ESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 1.15e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.40  E-value: 1.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   10 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   89 ASSMILT------------SAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLP---PMTLLYMTSPS----LNPIL 149
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  150 LTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YAMMTATIFLTLNTIKVLK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 308224747  223 ---LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLA 293
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-275 1.40e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 74.03  E-value: 1.40e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   9 LLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQLTHP 88
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  89 ASSM----------ILTSAIAMKLGLVPFHFWFPEVLQGSP-----LITGLLLST----IMKLPPMTLLYMTSPSLNPIL 149
Cdd:COG0651  196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPspvsaLLSGLLTKVgvyaILRVLTLLFGADPALFLGTLL 275

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 150 LTtLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----AMMTATIFLTLNTIKVL---- 221
Cdd:COG0651  276 LV-LGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtr 354

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 308224747 222 KLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAA 275
Cdd:COG0651  355 DLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 11-188 2.58e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 73.74  E-value: 2.58e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  11 LGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTRAAASALVLFSSMTNAWYTGQ-- 79
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  80 ---------WDITQLTHPASSM---ILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLymTSPSLNP 147
Cdd:MTH00198 279 mlgtilsatLETTNIELRQGSLgylFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|.
gi 308224747 148 ILLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 188
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
ndhB CHL00049
NADH dehydrogenase subunit 2
 3-259 2.34e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 67.72  E-value: 2.34e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   3 LIFIISLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLTRAAASALVL--FSsmtnaWYTGQ 79
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  80 -------WDI------TQLTHPASSMI----LTSAIAMKLGLVPFHFWFPEVLQGSPL-----------ITGLLLSTIMk 131
Cdd:CHL00049 189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTpvvaflsvtskVAASALATRI- 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 132 lppMTLLYMTSPSLNPILLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIII-------YNPKLTLLNFYly 204
Cdd:CHL00049 268 ---FDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFY-- 342

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 308224747 205 ammtatIFLTLNTIKVLKLSTLMTA----------WTKIPSLNAMLLLTLLSLAGLPPLTGFLPK 259
Cdd:CHL00049 343 ------IFMNLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-188 1.19e-11

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.46  E-value: 1.19e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  46 PRAIEAATKYFLTRAAASALVLF-SSMTNAWYTGQwdiTQLTHPASSMI-------------LTSAIAMKLGLVPFHFWF 111
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 112 PEVLQGSPLITGLLLSTIMKLP----PMTLLYMTSPSLNP---ILLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLG 184
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 308224747 185 WMAI 188
Cdd:PRK02504 314 FVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 45-188 5.19e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 63.56  E-value: 5.19e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  45 HPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQW--DITQLTHPASSMILTSAI--------AMKLGLVPFHFWFPEV 114
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQLLLflaffiafAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 115 LQGSPLITGLLLSTIM-KLP-------PMTLLYMTSPSLNPILLTtLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:COG1008  236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                 ..
gi 308224747 187 AI 188
Cdd:COG1008  315 LL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-262 3.90e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.88  E-value: 3.90e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  29 LEINTLAILPLIS-KSHHPRAIEAATKYFLTRAAASALVLFSSmtnAWYTGQWDITQLTHPASSM-------------IL 94
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  95 TSAIAMKLGLVPFHFWFPEVLQGSPL-ITGLLL-STIMKLPPM--TLLYMTSPSLNPI----LLTTLAVLSTALGGWMGL 166
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAAPSsISAMLLvIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 167 NQTQIRKILAFSSISHLGWM------AIIIIYNPKLT----------LLNFYLYAMMTATIFLT-------LNTIKVLKL 223
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNEL 386

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 308224747 224 STLMTawtKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 262
Cdd:PRK08376 387 GGLAR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 287-336 3.06e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 49.56  E-value: 3.06e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 308224747  287 FFYLRLAYCTTITLPPHTTNHMKQWRTNKSTNIT-IAILTSMSVMLLPISP 336
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-190 9.56e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.40  E-value: 9.56e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   46 PRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQ-WDITQL-THPASSMILT-------SAIAMKLGLVPFHFWFPEV-- 114
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  115 ---LQGSPLITGLLLST----IMKLpPMTLLYMTSPSLNPILLtTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMA 187
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygFLRF-NLPLFPDASLYFAPVLA-ALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309


                  ...
gi 308224747  188 III 190
Cdd:TIGR01972 310 LGI 312
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 9-190 2.37e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 52.06  E-value: 2.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   9 LLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAA------SALVLFSSMTNAWYTGQWDI 82
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  83 TQLTHPAS----SMILTSAIAM------KLGLVPFHFWFPEVLQGSP-LITGLLLSTIMKLPPMTLLYMTS--------P 143
Cdd:PRK08676 191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaaE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 308224747 144 SLNPILLTtLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII 190
Cdd:PRK08676 271 QFSNVLIG-LGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 77-259 4.66e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.46  E-value: 4.66e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  77 TGQWDITQL-THPASSMILTSAIAM-------KLGLVPFHFWFPEVLQGSPLITGLLLSTIM---------KLPPMtllY 139
Cdd:PRK12644 184 AGTYRLSELlADPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---F 260

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 140 MTSPSLNPILLTtLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPK------LTLLnfYLYAMMTATIFL 213
Cdd:PRK12644 261 ADVPVWRPTVLV-LGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFL 337

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 308224747 214 TLNTI-------KVLKLSTLmtaWTKIPSLNAMLLLTLLSLAGLPPLTGFLPK 259
Cdd:PRK12644 338 VVGIIdhstgtrDIRKLSGL---GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-294 6.57e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 50.65  E-value: 6.57e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  29 LEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFS-SMTNAwYTGQWDITQLTHPASSM--------ILTSAIA 99
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGALAENptvvtafgFVLLALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 100 MKLGLVPFHFWFPEVLQG-SPLITGLLLSTIMKLP--PMTLLY--------MTSPSLNPILLTtLAVLSTALGGWMGLNQ 168
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAvyALIRIYftvfggdfRFALGLGWLLAV-LALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 169 TQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YAMMTATIFLTLNTIKVL----KLSTLMTAWTKIPSLNAML 240
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 308224747 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 294
Cdd:PRK08375 373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 30-271 6.80e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.77  E-value: 6.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  30 EINTLAILPLISKSHHpRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDIT-------QLTHPASSMI----LTSAI 98
Cdd:PRK08668 128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  99 AMKLGLVPFHFWFPEVLQGSP------------------LITGLLLSTIMKLPPMTLLYMTSPSLNPILLTtLAVLSTAL 160
Cdd:PRK08668 207 VAKAGIFPLHVWAPDAYSEAPqsfsavlsgqlsklgaygFLLVLYVLPGTKLFSEFGTYRGVPLFNYILAW-LGNISIIV 285

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLT----LLNFYLYAMMTATIFLTLNTI----KVLKLSTLMTAWTK 232
Cdd:PRK08668 286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365

                        250       260       270
                 ....*....|....*....|....*....|....*....
gi 308224747 233 IPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 271
Cdd:PRK08668 366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 46-190 2.32e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 49.05  E-value: 2.32e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  46 PRAIEAATKYFLTRAAASALVLFSSMTNAWY----TGQWDITQLTHPASSMILTS--------AIAMKLGLVPFHFWFPE 113
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPPGVQYwlflaffiAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 114 VLQGSPLITGLLLSTIM-KLPPMTLLYM-------TSPSLNPILLTtLAVLSTALGGWMGLNQTQIRKILAFSSISHLGW 185
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlKMGAYGLLRFslplfpdASHEFAPIIIT-LGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                 ....*
gi 308224747 186 MAIII 190
Cdd:PRK05846 316 VTLGI 320
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 19-186 7.00e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.84  E-value: 7.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  19 SNHWIMAWTGLEINTLAILPLISKSHH-PRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQLTHPASSMILTSA 97
Cdd:COG1009  130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTILSSPL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  98 I----------AM-KLGLVPFHFWFPEVLQG----SPLI-------TGLLLstIMKLPPmtlLYMTSPSLNPILLTTLAV 155
Cdd:COG1009  210 LtlillllllgAFgKSAQFPLHFWLPDAMEGptpvSALLhaatmvkAGVYL--LARLSP---LFALSPVWLTVVAIIGAI 284

                        170       180       190
                 ....*....|....*....|....*....|..
gi 308224747 156 lsTAL-GGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:COG1009  285 --TALfAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 4-188 7.63e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 47.62  E-value: 7.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   4 IFIISLLLgttiTISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTnAWYTGQwdiT 83
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIL-VYANAA---T 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  84 QLTHPASSMILTSAIAM----------------------KLGLVPFHFWFPEVLQGSP-----LITGLLLST----IMKL 132
Cdd:PRK06458 188 VMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNValyaVLRY 267

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 308224747 133 pPMTLLYMTSPSLNPILLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 188
Cdd:PRK06458 268 -YILIDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
51-186 1.08e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.00  E-value: 1.08e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  51 AATKYFLTRAAASALVLFSSMTNAWYTG--QWDITQL---THPASSMILTSA-----IAMKLGLVPFHFWFPEV-LQGSP 119
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 308224747 120 LITGLLLSTIMKLPPMTLL------YMTSPSLNPILLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 51-190 5.95e-05

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 44.64  E-value: 5.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  51 AATKYFLTRAAASALVLFSSMTNAWYTGQ--WDITQLTH---PASSMILTS-----AIAMKLGLVPFHFWFPEV-----L 115
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDAhgeasA 217

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 308224747 116 QGSPLITGLLLST----IMKLPpMTLLYMTSPSLNPILLTtLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII 190
Cdd:PRK12561 218 PVSMILAGVLLKMggyaLIRFN-VQMLPDAHVYFAPALAI-LGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 107-264 1.50e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 43.41  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 107 FHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSP-----SLNPILLTTLAVLSTALGGWMGLNQTQIRKILAFSSIS 181
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPlfekaPLTLLIITIFGALTAFFAATVGLVQNDLKKVIAYSTCS 323

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 182 HLGWMAIIIIY--NPKLTLLNFYLYAMMTATIFLTLNTI---------KVLKLSTLMTAwtkIPSLNAMLLLTLLSLAGL 250
Cdd:MTH00032 324 QLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLIGSFSIMGL 400

                        170
                 ....*....|....
gi 308224747 251 PPLTGFLPKWLIIQ 264
Cdd:MTH00032 401 PYLTGFYSKDLILE 414
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
48-186 2.45e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 42.70  E-value: 2.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  48 AIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQLTHPASSMILTSAIAMKLGLV----------------PFHFWF 111
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 112 PEVLQGSPLITGLLLSTIMKLPPMTLLYMTSP--SLNPILLTTLAVLSTA---LGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:PRK07376 251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-267 5.34e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.48  E-value: 5.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  29 LEINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQLTH--PASSMILTSAIAMKLGLVP 106
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 107 FHFWFPEVLQGSPLITGLLLSTI-MKLPPMTLLYMT--SPSLNPILlTTLAVLSTALGGWMGLNQTQIRKILAFSSISHL 183
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVvVKAGVFPLVRCAldVPGLDLIV-RIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 184 GWmaiiIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLKL----STLMTAWTKIPSLNAmllltLLSLAGLPPLTGFLPK 259
Cdd:PRK07234 282 GF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIPLTMA-----SFSIAGFPLLAGFVSK 352


                 ....*...
gi 308224747 260 WLIIQELT 267
Cdd:PRK07234 353 VLTLKNLL 360
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 107-264 6.30e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 41.60  E-value: 6.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 107 FHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSP-----SLNPILLTTLAVLSTALGGWMGLNQTQIRKILAFSSIS 181
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfeqaPLALIIVTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 182 HLGWMAIII-IYNPKLTLLNFYLYAMMTATIFLTLNTI--------KVLKLSTLMTAwtkIPSLNAMLLLTLLSLAGLPP 252
Cdd:MTH00020 309 QLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLTYIFFLIGSLSLMGFPY 385

                        170
                 ....*....|..
gi 308224747 253 LTGFLPKWLIIQ 264
Cdd:MTH00020 386 LTGFYSKDLILE 397
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 105-262 7.01e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.44  E-value: 7.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 105 VPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSL--NPILLTTLAV---LSTALGGWMGLNQTQIRKILAFSS 179
Cdd:PRK12647 212 FPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLggTPLWQTILPLfggLTMLTGALLAVRQTDLKLILAYST 291

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 180 ISHLGWMAIIIIYNPKLTLLNFYLY----AMMTATIFLTLNTIK-------VLKLSTLmtaWTKIPSLNAMLLLTLLSLA 248
Cdd:PRK12647 292 VSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSMA 368

                        170
                 ....*....|....
gi 308224747 249 GLPPLTGFLPKWLI 262
Cdd:PRK12647 369 GLPPLFGFLAKELI 382
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
91-264 7.38e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.09  E-value: 7.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  91 SMILTSAIAMKLGLVPFhFWFPEVLQGSPLITGLLLSTIMK-------LPPMTLLYMTSPSLNPILLTTLAVLSTALGGW 163
Cdd:PRK12663 210 ALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTkvgiyalIRVFTLLFPQERELLHPLLATMAAITMVIGAL 288

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 164 MGLNQTQIRKILAFSSISHLGWM-AIIIIYNPK-LTLLNFYLY---AMMTAtIFLTLNTIKVL----KLSTLMTAWTKIP 234
Cdd:PRK12663 289 GALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVhdmVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYRKEP 367

                        170       180       190
                 ....*....|....*....|....*....|
gi 308224747 235 SLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:PRK12663 368 LFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
51-264 9.09e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.85  E-value: 9.09e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  51 AATKYFLTRAAASALVLFSSMTNAWYTGQWD------ITQLTHPASSMILTSAI----AMKLGLVPFHFWFPEV-LQGSP 119
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 120 LITGLLLSTIMKLPPMTL------LYMTSPSLNPILLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYN 193
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 194 PKLTLLNfYLYAMMTATIFLTL------------NTIKVLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWL 261
Cdd:PRK07363 318 TQLSLLG-AVAQMISHGLILALlfhlvgiverkvGTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVAEFI 396


                 ...
gi 308224747 262 IIQ 264
Cdd:PRK07363 397 VFQ 399
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 100-263 1.10e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.49  E-value: 1.10e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 100 MKLGLVPFHFWFPEVLQGSPLITGLLLS-TIMKLPPMTL-----------LYMTSPSLNPILLTtLAVLSTALGGWMGLN 167
Cdd:PRK12662 221 IKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYLIirivydvfkanFVFTTLPFNNVFMI-LAALAIVFGSVLAIL 299

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 168 QTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----AMMTATIFLTLNTIK----VLKLSTLMTAWTKIPSLNAM 239
Cdd:PRK12662 300 SKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKITLA 379

                        170       180
                 ....*....|....*....|....
gi 308224747 240 LLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:PRK12662 380 FVLLSLSLIGMPPTSGFVAKWYIL 403
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
9-186 1.27e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 40.45  E-value: 1.27e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747   9 LLLGTTITISSNHW---IMAW--TGLEINTLailpLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDIT 83
Cdd:PRK08168 109 VLAAVHLLVLSDHLlvlIAAWaaISLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLS 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  84 QL-----THPASS------MILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMT-----SPSLNP 147
Cdd:PRK08168 185 ALwahlaAQGASPslqaaaLLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAGVVNLGGFVLIRFAplleqAPPARW 264

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 308224747 148 ILLTtLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:PRK08168 265 LLVL-VGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK12650 PRK12650
DUF4040 family protein;
94-190 2.07e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.03  E-value: 2.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  94 LTSAIAM--------KLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNP-----ILLTTLAVLSTAL 160
Cdd:PRK12650 206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFHDvavwnWLLIIVGMITALM 285

                         90       100       110
                 ....*....|....*....|....*....|
gi 308224747 161 GGWMGLNQTQIRKILAFSSISHLGWMAIII 190
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 44-259 2.75e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.43  E-value: 2.75e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  44 HHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQLTH--------PASSMILTSAIAMKLGLV------PFHF 109
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQdselieniKGHPLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 110 WFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSLNP-----ILLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLG 184
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGteawfILVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 185 WMAIIIIYNPK------LTLLNFYL--YAMMTATIFLTLN-------TIKVLKLSTLMTawtKIPSLNAMLLLTLLSLAG 249
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMAG 392

                        250
                 ....*....|
gi 308224747 250 LPPLTGFLPK 259
Cdd:PRK12649 393 IPPLNGFLSK 402
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 78-341 3.30e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 39.36  E-value: 3.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  78 GQWDITQLTHPASSMILTSAI---AM-KLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSPSL------NP 147
Cdd:MTH00207 165 GHWSITNMWQTDMNNYIALSImiaAMtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLsstywfNP 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 148 ILLTTlAVLSTALGGWMGLNQTQIRKILAFSSISHLG-WMAIIIIYNPKLTLLNFYLYAMMTATIFLTLNTIKVLK---- 222
Cdd:MTH00207 245 ALLLT-ASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHhhsq 323

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 223 -LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLP 301
Cdd:MTH00207 324 dLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSP 403

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 308224747 302 PHTTNHMKQWRTNKSTNITIAILTSMSV---------MLLPISPMILTI 341
Cdd:MTH00207 404 NSSSPYHHLEDEDKSLTTPMLLLTLGAItsgsalnwwLPTPQEEPILPL 452
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 97-191 3.33e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.13  E-value: 3.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  97 AIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTI-MKLPPMTLLYMTSP-------SLNPILLtTLAVLSTALGGWMGLNQ 168
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                         90       100
                 ....*....|....*....|...
gi 308224747 169 TQIRKILAFSSISHLGWMAIIII 191
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
30-264 5.47e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.47  E-value: 5.47e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  30 EINTLAILPLISKSHHPRAIEAATKYFLTRAAASALVLFSSMTNAWYTGQWDITQ-----LTHPASSMILTSAIAMKLGL 104
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 105 V------PFHFWFPEVLQGS-PLITGLLLS------TIMKLPPMTLLYMTS--PSLNPILLTtLAVLSTALGGWMGLNQT 169
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAkPFGSALLQTfskfvlVALMLVIFKLFGGLSyfPSAQGVLIA-LSVLAMVFGVVMALLQT 288

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 170 QIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYA----MMTATIFLTLNTI----KVLKLSTLMTAWTKIPSLNAMLL 241
Cdd:PRK06277 289 DYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVL 368

                        250       260
                 ....*....|....*....|...
gi 308224747 242 LTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:PRK06277 369 CAKLAISGVPPFNGFQSKLMLAQ 391
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 64-214 6.31e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 38.39  E-value: 6.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  64 ALVLFSSMTNAWYTGQWDITQLTHPASSMILTSAIAMKLGLVPFHFWFPEVLQGSPLITGLLLSTIMKLPPMTLLYMTSP 143
Cdd:MTH00211 180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 308224747 144 SLNPILLTTLAVL-----STALGGWMGLNQTQIRKILAFSSISHLGWMAIII-IYNPKLTLLNFYLYAMMTATIFLT 214
Cdd:MTH00211 260 LFQNNQLILGAVLllgalTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLgLNQPQLAFLHICTHAFFKAMLFMC 336
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 51-266 6.33e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 38.56  E-value: 6.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747  51 AATKYFLTRAAASALVLFSSMTNAWYTGQWDITQLTHPASSMILT-----SAIAMKLGLVPFHFWFPEVLQGSP-----L 120
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPsnvsaL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 121 ITGLLLSTIMKLPPMTLLYMTSPSLN-PILLTTLAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLL 199
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPELWwGVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVY 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 308224747 200 NFYLYAMMT--ATIFLTLNTiKVLKLSTLMTAWT------------------KIPSLNAMLLLTLLSLAGLPPLTGFLPK 259
Cdd:PRK08667 323 GLDTLALLAlgGALFHSLNH-ALFKSLLFLTAGSvvhatgtrniekmgglvkLMPYTSALFLVGAVSIAALPPFNGFASE 401


                 ....*..
gi 308224747 260 WLIIQEL 266
Cdd:PRK08667 402 LLLYESF 408
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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