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Conserved domains on  [gi|307829190|gb|ADN95200|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Prosthemadera novaeseelandiae]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.62e-164

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 462.75  E-value: 1.62e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   1 MNPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQWDIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 241 STTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 307829190 321 TNVLIAILATLSITLLPLTPMLSIIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.62e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 462.75  E-value: 1.62e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   1 MNPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQWDIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 241 STTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 307829190 321 TNVLIAILATLSITLLPLTPMLSIIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.03e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 94.69  E-value: 3.03e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   23 SNHWIMAWTGLEINTLAVIPLI-SKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTG--QWDIMQLTHPT------ 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   94 ---SCLILTAAIAIKLGLVPFHFWFPEVLQG------TSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAILSTAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGaptpvsALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  165 GGWAGLNQTQIRKILAFSSISHLGWMAIIIS----YNPKLTLLNFYLYSLITATVFL-----TLNTMKVLKLSTLMTAWA 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 307829190  236 KVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-298 1.40e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.10  E-value: 1.40e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  15 LGTTITISSNHWIMAWTGLEINTLAVIPLIS-KSHHPRAIEAATKYFLVQATASALLLF-SSMTNAwYTGQWDIMQLTHP 92
Cdd:COG1007  113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  93 TS------------CLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKL----PPMTLLFLTSHSLNPS---L 153
Cdd:COG1007  192 LAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADwqlL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 154 MTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAI-IISYNPK-LTLLNFYL--YSLITATVFLTLNTM-KVLKLS 228
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLsRKGGEA 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307829190 229 TLMTAWA----KVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAY 298
Cdd:COG1007  352 EEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 7.64e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 7.64e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   14 FLGTTITISSNHWIMAWTGLEINTLAVIPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTGQWDIMQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   93 TSCLILT------------AAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLP---PMTLLFLTS----HSLNPSL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  154 MTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLN--FYL--YSLITATVFLTLNTMKVLKLS- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307829190  229 ----TLMTAWAKV-PVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 1.62e-164

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 462.75  E-value: 1.62e-164
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   1 MNPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWY 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQWDIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 241 STTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 307829190 321 TNVLIAILATLSITLLPLTPMLSIIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-342 3.32e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 378.11  E-value: 3.32e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   1 MNPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWY 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQWDIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 241 STTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHINKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|..
gi 307829190 321 TNVLIAILATLSITLLPLTPML 342
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTI 342
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-342 3.24e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 375.68  E-value: 3.24e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   1 MNPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWY 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQWDIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSlNPSLMTTMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 241 STTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHINKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|...
gi 307829190 321 TNVL-IAILATLSITLLPLTPML 342
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAI 342
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 7.94e-118

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 344.14  E-value: 7.94e-118
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   1 MNPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWY 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQWDIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 241 STTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYCTAITLPPhTTNHMK-QWHINK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319

                        330       340
                 ....*....|....*....|....*..
gi 307829190 320 P-TNVLIAILATLSITLLPLTPMLSII 345
Cdd:MTH00105 320 TkPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-343 1.72e-95

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 287.25  E-value: 1.72e-95
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   1 MNPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWY 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQWDIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 241 STTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHINKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|...
gi 307829190 321 TNVLIAILATLSITLLPLTPMLS 343
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLL 343
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 6.16e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 247.54  E-value: 6.16e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   1 MNPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWY 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQWDIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 241 STTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYCTAITLPPHTTNHMKQWHINKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 307829190 321 TNVLIAILATLSITLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 2.63e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 188.88  E-value: 2.63e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   1 MNPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWy 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 tgqwdIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLfltSHSLNPSLMTTMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 241 STTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYcTAITLPPHTTNHMKQWHINKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|....*
gi 307829190 321 TNVLIaILATLSITLLPLTPMLSII 345
Cdd:MTH00160 312 SLILN-FLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-298 7.64e-50

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 169.30  E-value: 7.64e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   5 AKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  85 DIMqlthptscLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLL--FLTSHSLNPSLMtTMAILST 162
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLsnFLDLYWLAYLLC-VISVLSA 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 163 ALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNtMKVLKLSTLMTAWAKVPVLST 242
Cdd:MTH00144 156 LVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLW-SGDSGSMKDLGSLKPSYKTGL 234

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 307829190 243 TLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAY 298
Cdd:MTH00144 235 SIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFF 290
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-337 9.47e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 161.49  E-value: 9.47e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   7 LVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSmtnawyTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  87 MQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAILSTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 167 WAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVLSTTLVL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYcTAITLPPHTTNhmKQWHINKPTNVLIA 326
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS--LKSAPYEPKTKILI 319

                        330
                 ....*....|.
gi 307829190 327 ILATLSITLLP 337
Cdd:MTH00011 320 SMCTLSLGLIP 330
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-342 1.27e-39

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 142.50  E-value: 1.27e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   8 VFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTgqwdim 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  88 qLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHslNPSLMTTMAILSTALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 168 AGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLKLSTLMTAWAKVPVLSTTLVLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 248 LLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAYCTAItlppHTTNHMKQWHINKPTNVLIAI 327
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLFI 308

                        330
                 ....*....|....*
gi 307829190 328 LATLSITLLPLTPML 342
Cdd:MTH00197 309 LLMMMLPLLMIFTMI 323
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 3.03e-22

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 94.69  E-value: 3.03e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   23 SNHWIMAWTGLEINTLAVIPLI-SKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTG--QWDIMQLTHPT------ 93
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGtlSFDELSKALTGglnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   94 ---SCLILTAAIAIKLGLVPFHFWFPEVLQG------TSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTMAILSTAL 164
Cdd:pfam00361  81 lllLFLLILVGFLFKSAQVPFHTWLPDAYEGaptpvsALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  165 GGWAGLNQTQIRKILAFSSISHLGWMAIIIS----YNPKLTLLNFYLYSLITATVFL-----TLNTMKVLKLSTLMTAWA 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 307829190  236 KVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 7.36e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 95.10  E-value: 7.36e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  15 LGTTITISSNHWIMAWTGLEINTLAVIPLI-SKSHHPRAIEAATKYFLVQATASALLLFS-------------SMTNAWY 80
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQWDIMQLTHPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFltSHSLNPSLMTTMAIL 160
Cdd:MTH00196  84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGGLF 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 161 STALGGWAGLNQTQIRKILAFSSISHLGWMAI------IISYNPKLTLLNFYLY-SLITATVFLTLNTMK--VLKLSTLM 231
Cdd:MTH00196 162 SLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWgieigsFESIQASLVYLFIYIImSICVFSIILALNVYKnlIIEFSGLS 241

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 307829190 232 TawaKVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRL 296
Cdd:MTH00196 242 R---RLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 15-298 1.40e-20

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 92.10  E-value: 1.40e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  15 LGTTITISSNHWIMAWTGLEINTLAVIPLIS-KSHHPRAIEAATKYFLVQATASALLLF-SSMTNAwYTGQWDIMQLTHP 92
Cdd:COG1007  113 LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYG-ATGSLNLAGIAAA 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  93 TS------------CLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKL----PPMTLLFLTSHSLNPS---L 153
Cdd:COG1007  192 LAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAADwqlL 271

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 154 MTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAI-IISYNPK-LTLLNFYL--YSLITATVFLTLNTM-KVLKLS 228
Cdd:COG1007  272 LAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLsRKGGEA 351

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307829190 229 TLMTAWA----KVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAY 298
Cdd:COG1007  352 EEIEDLAglarRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-297 7.64e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 90.01  E-value: 7.64e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   14 FLGTTITISSNHWIMAWTGLEINTLAVIPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTGQWDIMQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   93 TSCLILT------------AAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLP---PMTLLFLTS----HSLNPSL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  154 MTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLN--FYL--YSLITATVFLTLNTMKVLKLS- 228
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKDEw 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307829190  229 ----TLMTAWAKV-PVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLA 297
Cdd:TIGR01770 352 ieyiSDFAGLFKTnPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-296 7.71e-20

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 90.27  E-value: 7.71e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   8 VFVSSLF--LGTTITISSNHWIMAWTGLEINTLAVIPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTGQW 84
Cdd:PRK05777 105 FYLLVLFalLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSL 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  85 DIMQLTHPTS------------CLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLL-------FLT 145
Cdd:PRK05777 185 SFAGIAKALAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLlrllvvaFGG 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 146 SHSLNPSLMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWM--AIIISYNPKLTLLNFYL--YSLITATVFLTLNT 221
Cdd:PRK05777 265 LSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFGVISL 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 222 M-KVLKLSTLMTAWA----KVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRL 296
Cdd:PRK05777 345 LrRKGGEAESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 15-296 3.54e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 81.99  E-value: 3.54e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  15 LGTTITISSNHWIMAWTGLEINTLAVIPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTGQWDIMQ----L 89
Cdd:MTH00199 108 LGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGinsiL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  90 THPTSCLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTtmAILSTALGGWAG 169
Cdd:MTH00199 188 TGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAIGA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 170 LNQTQIRKILAFSSISHLGW----MAIIISYNPKLTLLNFYLYSLITATVFLTLNTMKVLK--LSTLMTAWAKVPVLSTT 243
Cdd:MTH00199 266 LNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIALT 345

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 307829190 244 LVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRL 296
Cdd:MTH00199 346 LALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 8.02e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 81.44  E-value: 8.02e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   3 PQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAI---------EAATKYFLVQATASALLLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  74 SMTNAWYTGQ----WDIMQLTHPTS----------CLILTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLppM 139
Cdd:MTH00198 267 CALYFGFTGNegmlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--T 344

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 140 TLLFLTSHSLNPSLMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYSLI-------T 212
Cdd:MTH00198 345 VYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsalaS 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 307829190 213 ATVFLTL------------------NTMKVLKLSTLMTAWAKVPVLSTTLVLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 2.13e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 70.56  E-value: 2.13e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  13 LFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTGQWDIMQLTH- 91
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  92 ---------PTSCLILTAAIAIKLGLVPFHFWFPEvlqgtslttslllstAMKLPP----------------------MT 140
Cdd:COG0651  196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPD---------------AYPAAPspvsallsglltkvgvyailrvLT 260

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 141 LLFLTSHSLNPS-LMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLY----SLITATV 215
Cdd:COG0651  261 LLFGADPALFLGtLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALL 340

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 307829190 216 FLT----LNTMKVLKLSTLMTAWAKVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAI 282
Cdd:COG0651  341 FLAagaiERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ndhB CHL00049
NADH dehydrogenase subunit 2
 7-263 1.14e-11

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 65.41  E-value: 1.14e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   7 LVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHP-RAIEAATKYFLVQATASALLL--FSsmtnaWYTGQ 83
Cdd:CHL00049 114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFS-----WLYGL 188

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  84 -------WDI------MQLTHPTSCLI----LTAAIAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPP-------M 139
Cdd:CHL00049 189 sggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAAsalatriF 268

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 140 TLLFLTSHSLNPSLMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAI-IISYNPKLTLLNFYLYSLITatVFLT 218
Cdd:CHL00049 269 DIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIgIIVGDSNDGYASMITYMLFY--IFMN 346

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 307829190 219 LNTMKVLKLSTLMTA----------WAKVPVLSTTLVLTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 347 LGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 2.44e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 52.65  E-value: 2.44e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 307829190  291 FFYLRLAYCTAITLPPHTTNHMKQWHINKPTN-VLIAILATLSITLLPLTP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNtLLLPTLTTLSILLLPLTP 51
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 4.89e-08

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 54.62  E-value: 4.89e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   2 NPQAKLVFVSSLFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHpRAIEAATKYFLVQATASALLLFSSMTNAWYT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  82 GQWDI-------MQLTHPTSCLI----LTAAIAIKLGLVPFHFWFPE-----------VLQGTSLTT-SLLLSTAMKLPP 138
Cdd:PRK08668 175 GTFDFadisqglINDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLgAYGFLLVLYVLP 254

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 139 MTLLFLT-----SHSLNPSLMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTL-------LNFY 206
Cdd:PRK08668 255 GTKLFSEfgtyrGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFagglfhvFNHA 334

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 207 LYS----LITATVFLTLNTMKVLKLSTLmtAWaKVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAI 282
Cdd:PRK08668 335 LFKglffLIFAAVIYRTGTTKISEMGGL--IE-KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 8.95e-08

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 53.52  E-value: 8.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  50 PRAIEAATKYFLVQATASALLLF-SSMTNAWYTGQWDIMQ-----LTHPTSCLILT-----AAIAIKLGLVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAialalITSPSLGLALAlvfviAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 119 LQGTSLTTSLLLSTAMKLPPMTL---LFLTSHSLNPS----LMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMA 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALairLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 192 I--IISYNPKLTLLNFYLysliTATVFLTLNTMKVLKLSTLMTA----------WAKVPVLSTTLVLTLLSLAGLPPLTG 259
Cdd:PRK02504 317 IglVAGTEAGYASMVFYL----LAYLFMNLGAFACVILFSLRTGtdqisdyaglYQKDPLLTLGLSLCLLSLGGIPPLAG 392


                 ....
gi 307829190 260 FLPK 263
Cdd:PRK02504 393 FFGK 396
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 38-198 3.87e-07

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 51.62  E-value: 3.87e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  38 LAVIP---LISKSHHPRAIEAATKYFLVQATASALLLFSSMTNAWYTGQW--DIMQLTH-----PTSCLILTA---AIAI 104
Cdd:COG1008  142 LMLIPmyfLIGIWGGERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAV 221

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 105 KLGLVPFHFWFPEVL-QGTSLTTSLLLSTAMKLP-------PMTLLFLTSHSLNPsLMTTMAILSTALGGWAGLNQTQIR 176
Cdd:COG1008  222 KVPMFPFHTWLPDAHvEAPTAGSVLLAGVLLKMGgygllrfALPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLK 300

                        170       180
                 ....*....|....*....|...
gi 307829190 177 KILAFSSISHLGWMAI-IISYNP 198
Cdd:COG1008  301 RLIAYSSVSHMGFVLLgIFALNP 323
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 9.44e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 50.48  E-value: 9.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  33 LEINTLAVIPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSmtnAWYTGQWDI---------MQLTHPTSCLI----L 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTlnmaylavkMSENPTVVAKIalalF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  99 TAAIAIKLGLVPFHFW----FPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPS----LMTTMAILSTALGGWAGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 171 NQTQIRKILAFSSISHLGWM------AIIISYNPKLT-------------LLNFYLY----SLITATVFLTLNTMKVLKL 227
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggiyhIVNHALYkallFLTAGAVIYETGTRNLNEL 386

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 307829190 228 STLMTawaKVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAI 282
Cdd:PRK08376 387 GGLAR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAM 438
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-268 1.62e-06

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 49.55  E-value: 1.62e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190   50 PRAIEAATKYFLVQATASALLLFSSMTNAWYTGQW----DIMQLTHPTSC-----LILTAAIAIKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  120 QGTSLTTSLLLSTAMKLPP-------MTLLFLTSHSLNPSLMtTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTygflrfnLPLFPDASLYFAPVLA-ALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  193 -IISYNPKLT---LLNFYLYSLITATVFLTLNT----MKVLKLSTLMTAWAKVPVLSTTLVLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 gIFSFNELGIsgaVFQMISHGLITAALFLLVGVlyerAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390


                  ....
gi 307829190  265 LIIQ 268
Cdd:TIGR01972 391 LILL 394
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-298 1.35e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 46.80  E-value: 1.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  33 LEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFS-SMTNAwYTGQWDIMQLTH--PTSCLILTA------AIA 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 104 IKLGLVPFHFWFPE-----------VLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPSLMTTmAILSTALGGWAGLNQ 172
Cdd:PRK08375 214 LKAAVFPLHTWLPRaypaappvvtaLLSGLVTKVAVYALIRIYFTVFGGDFRFALGLGWLLAVL-ALLSMLVGSLAALGQ 292

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 173 TQIRKILAFSSISHLGWMAIIISYNPKLTLLN--FYL--YSLITATVFL-------TLNTMKVLKLSTLMTawaKVPVLS 241
Cdd:PRK08375 293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLaagaievTYGTRRLSELSGLGR---RMPLTA 369

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 307829190 242 TTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQDMALTAMAISLLSLLSLFFYLRLAY 298
Cdd:PRK08375 370 AAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-263 2.82e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 46.07  E-value: 2.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  96 LILTAAIAiKLGLVPFHFWFPEVLQGTSLTTSLLLSTAM---------KLPPMtllFLTSHSLNPSLMTtMAILSTALGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLV-LGLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 167 WAGLNQTQIRKILAFSSISHLGWMAIIISYNPK------LTLLnfYLYSLITATVFLTL-------NTMKVLKLSTLmta 233
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVgiidhstGTRDIRKLSGL--- 357

                        170       180       190
                 ....*....|....*....|....*....|
gi 307829190 234 WAKVPVLSTTLVLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 358 GRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 142-267 7.32e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 44.34  E-value: 7.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 142 LFLTSHSLNPSLMTtMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLY----SLITATVFL 217
Cdd:PRK12662 271 FVFTTLPFNNVFMI-LAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFM 349

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 307829190 218 TLNTMK----VLKLSTLMTAWAKVPVLSTTLVLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 350 VSGSISyhfgTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 23-190 8.28e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 44.37  E-value: 8.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  23 SNHWIMAWTGLEINTLAVIPLISKSHH-PRAIEAATKYFLVQATASALLLFSSMTNAWYTGQWDIMQL-----THPTSCL 96
Cdd:COG1009  130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  97 ILTAAIAI------KLGLVPFHFWFPEvlqgtslttslllstAMKLP-P--------------------MTLLFltshSL 149
Cdd:COG1009  210 LTLILLLLllgafgKSAQFPLHFWLPD---------------AMEGPtPvsallhaatmvkagvyllarLSPLF----AL 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 307829190 150 NPSLMTTMAI--LSTAL-GGWAGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1009  271 SPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-282 8.84e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.14  E-value: 8.84e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 109 VPFHFWFPEvlqgtslttslllstAMKLPPMTLLFLtsHS-------------LNPSL------MTTMAI---LSTALGG 166
Cdd:PRK12647 212 FPFHFWLPN---------------AMEAPTPVSAYL--HSatmvkagiyllarLNPVLggtplwQTILPLfggLTMLTGA 274

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 167 WAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLY----SLITATVFLTLNTMK-------VLKLSTLMTAwa 235
Cdd:PRK12647 275 LLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGLRRA-- 352

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 307829190 236 kVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQELTKQD---MALTAMAI 282
Cdd:PRK12647 353 -MPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPlwsLILTVAAV 401
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-266 1.95e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 43.15  E-value: 1.95e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  55 AATKYFLVQATASALLLFSSMTNAWYTG--QWDIMQLTHPT----SCLILTAAI----AIKLGLVPFHFWFPEV-LQGTS 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLRSHTlplsTQLLLLAPIlvgfGIKIPLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 124 LTTSLLLSTAMKLPPMTLL------FLTSHSLNPSLMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 198 PKLTLLNFYL----YSLITATVFLTLNTM-------KVLKLSTLMTAWAKVPVLSTTLVLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473 318 TPLSILAAVFqmisHGLISALLFLLVGVVykktgsrDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
139-268 2.46e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 139 MTLLFLTSHSLNPSLMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLN--FYL-YSLITAT- 214
Cdd:PRK12663 260 FTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLvHDMVVKTa 339

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 307829190 215 VFLTLNTMKVL----KLSTLMTAWAKVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 340 LFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-194 3.11e-04

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 42.50  E-value: 3.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  50 PRAIEAATKYFLVQATASALLLFSSMTNAWYTGQW-------DIMQLTHPTSCLILT-----AAIAIKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVYYNAtgtfdiaDLLNLPLPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 118 -----------VLQGTSLTTSLLLSTAMKLPpmtLLFLTSHSLNPsLMTTMAILSTALGGWAGLNQTQIRKILAFSSISH 186
Cdd:PRK05846 237 ahvqaptagsvLLAGILLKMGAYGLLRFSLP---LFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312


                 ....*...
gi 307829190 187 LGWMAIII 194
Cdd:PRK05846 313 MGFVTLGI 320
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
55-268 1.14e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 40.47  E-value: 1.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  55 AATKYFLVQATASALLLFSSMTNAWYTGQ----WDIM---QLTHPTSCLILTAAI---AIKLGLVPFHFWFPEV-LQGTS 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGStsfdYDAIstqNLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 124 LTTSLLLSTAMKLPPMTL------LFLTSHSLNPSLMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGW-------- 189
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYilvaaaag 317

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 190 --------MAIIISYNPKLTLLnFYLYSLITATVfltlNTMKVLKLSTLMTAWAKVPVLSTTLVLTLLSLAGLPPLTGFL 261
Cdd:PRK07363 318 tqlsllgaVAQMISHGLILALL-FHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392


                 ....*..
gi 307829190 262 PKWLIIQ 268
Cdd:PRK07363 393 AEFIVFQ 399
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-218 1.37e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.51  E-value: 1.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  13 LFLGTTITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATA------SALLLFSSMTNAWYTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  87 MQLTHPTSCL---ILTAA-------IAIKLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPS---- 152
Cdd:PRK08676 191 TELAAHASLLspsVLGASflfifigFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307829190 153 ----LMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKL----TLLNFYLYSLITATVFLT 218
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLalfwMLFHMLAHSLVKSGLFFS 344
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 12-192 2.38e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 39.53  E-value: 2.38e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  12 SLFLGTT-ITISSNHWIMAWTGLEINTLAVIPLISKSHHPRAIEAATKYFLVQATASALLLFSS----------MTNAWY 80
Cdd:PRK06458 115 QLFLFTMlLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEM 194

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  81 TGQW-DIMQLTHPTSCLILTAAIAI-------KLGLVPFHFWFPE-----------VLQGTSLTTSLLLSTAMKLppmtL 141
Cdd:PRK06458 195 AILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALYAVLRYYI----L 270

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 307829190 142 LFLTSHSLNPS-LMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK06458 271 IDAAIGSDFPGrLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12650 PRK12650
DUF4040 family protein;
29-263 4.88e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 38.87  E-value: 4.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  29 AWtglEINTLAVIPLISKSHhPRAIEAATKYFLVQATASALLLFSSMTNAWYTGQWDIMQLTHPTSCL---ILTAAIAI- 104
Cdd:PRK12650 138 AW---ELVSLASFFLIARSG-SGGEAGSIRTLILTFFGGLTLLAAVAIAATQTGTTSLSGILHSDVWAekpGLTTVVAVl 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 105 -------KLGLVPFHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLL--FLTSHSLNPS---LMTTMAILSTALGGWAGLNQ 172
Cdd:PRK12650 214 iavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLlrFSPVFHDVAVwnwLLIIVGMITALMGAVFAVQK 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 173 TQIRKILAFSSISHLGWMAIIISYNPKLTL----LNFYLYSLITATVFLTL-------NTMKVLKLSTLmtaWAKVPVLS 241
Cdd:PRK12650 294 TDLKKLTAYSTVSQLGWIVATIGVGTPFALtaavVHTLAHALFKSSLFMLIgvvdhqaGTRDIRRLGSL---WRRMPFTF 370

                        250       260
                 ....*....|....*....|..
gi 307829190 242 TTLVLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 371 VSVTIAALSMAAVPPLFGFVSK 392
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 105-268 7.48e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 38.02  E-value: 7.48e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 105 KLGLvpfHFWFPEVLQGTSLTTSLLLSTAMKLPPMTLL-----FLTSHSLNPSLMTTMAILSTALGGWAGLNQTQIRKIL 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMirsfpLFEKAPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 180 AFSSISHLGWMAIIISY--NPKLTLLNFYLYSLITATVFL---------TLNTMKVLKLSTLMTAwakVPVLSTTLVLTL 248
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS---IPFTYTMMLIGS 394

                        170       180
                 ....*....|....*....|
gi 307829190 249 LSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 395 FSIMGLPYLTGFYSKDLILE 414
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 8.70e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 37.89  E-value: 8.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  48 HHPRAIEAATKYFLVQATASALLLFSSMTNAWYTGQWDIMQLTHPTSC--------LILTAAIAIKLGLV------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 114 WFPEVLQGTSLTTSLLLSTAMKLPPMTLLFLTSHSLNPS-----LMTTMAILSTALGGWAGLNQTQIRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 189 WMAIIISYNPK------LTLLNFYL--YSLITATVFLTLN-------TMKVLKLSTLMTawaKVPVLSTTLVLTLLSLAG 253
Cdd:PRK12649 316 YLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMAG 392

                        250
                 ....*....|
gi 307829190 254 LPPLTGFLPK 263
Cdd:PRK12649 393 IPPLNGFLSK 402
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
 96-268 9.55e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 37.64  E-value: 9.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190  96 LILTAAIAIKLGLVPFHFWFPE-----------VLQGTSLTTSLLLSTAMKlppmTLLFlTSHSLNPSLMtTMAILSTAL 164
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDsyptapapvtaVFAGLLTKVGVYAIIRTH----TLLF-PGGGLDTLLM-VVALLTMVV 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829190 165 GGWAGLNQTQIRKILAFSSISHLGWMAIIISYNPKLTLLNFYLYS----LITATVFLTL-------NTMKVLKLSTLMTA 233
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVglierqaGSSSLRRLGGLAKA 366

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 307829190 234 wakVPVLSTTLVLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 367 ---SPLLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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