|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
7.02e-162 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 455.82 E-value: 7.02e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 1 MTPQAKLIFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPTLLTCMAVL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKVPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*.
gi 307829184 321 TSTTIAILMVLSTMLLPISPMITTII 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
3.33e-134 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 385.70 E-value: 3.33e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 1 MTPQAKLIFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSlNPTLLTCMAVL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKVPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*..
gi 307829184 321 TSTT-IAILMVLSTMLLPISPMITTII 346
Cdd:MTH00135 320 QLTLpLAISTTATLMLLPLTPAILALL 346
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
9.98e-134 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 384.66 E-value: 9.98e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 1 MTPQAKLIFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPTLLTCMAVL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKVPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
330 340
....*....|....*....|....*.
gi 307829184 321 TSTTIAILMVLSTMLLPISPMITTII 346
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNLF 346
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
8.15e-120 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 349.14 E-value: 8.15e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 1 MTPQAKLIFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPTLLTCMAVL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKVPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPhTTNHMK-RWHINK 319
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQFEN 319
|
330 340
....*....|....*....|....*..
gi 307829184 320 PTSTT-IAILMVLSTMLLPISPMITTI 345
Cdd:MTH00105 320 TKPMTlLPTLIILSTMLLPLTPMLSIL 346
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
5.66e-98 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 293.80 E-value: 5.66e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 1 MTPQAKLIFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWH 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 81 TGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPTLLTCMAVL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKVPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*.
gi 307829184 321 TSTTIAILMVLSTMLLPISPMITTII 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
7-336 |
8.56e-84 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 257.55 E-value: 8.56e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 7 LIFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00041 7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 87 TQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPTLLTCMAVLSTALGG 166
Cdd:MTH00041 87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 167 WMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKVPSLNAMLFL 246
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKRWHINKPTSTTIA 326
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326
|
330
....*....|
gi 307829184 327 ILMVLSTMLL 336
Cdd:MTH00041 327 ILSILSSISI 336
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
7.30e-60 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 195.43 E-value: 7.30e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 1 MTPQAKLIFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWh 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 81 tgqwdITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTspsLNPTLLTCMAVL 160
Cdd:MTH00160 81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 161 STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKVPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 241 NAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAISLLSLLGLFFYLRLAYCATITLPPHTTNHMKrwHINKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLK--KKKNK 310
|
330 340
....*....|....*....|....*
gi 307829184 321 TSTTIAILMVLSTMLLPISPMITTI 345
Cdd:MTH00160 311 FSLILNFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-276 |
3.46e-51 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 172.76 E-value: 3.46e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 5 AKLIFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144 5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 85 DitqlthptSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPTLLTC-MAVLSTA 163
Cdd:MTH00144 85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCvISVLSAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLmtTWTKVPSLNAM 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGL 234
|
250 260 270
....*....|....*....|....*....|....
gi 307829184 244 LFLT-LLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:MTH00144 235 SIISlLLSLGGLPPFLGFCSKLLVLISSMESSPL 268
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
7-276 |
1.80e-47 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 163.41 E-value: 1.80e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 7 LIFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 87 TQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPTLLTCMAVLSTALGG 166
Cdd:MTH00011 83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 167 WMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKVPSLNAMLFL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
|
250 260 270
....*....|....*....|....*....|
gi 307829184 247 TLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMI 272
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-270 |
9.69e-39 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 140.19 E-value: 9.69e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 8 IFTTSLLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 88 qLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLfmTSPSLNPTLLTCMAVLSTALGGW 167
Cdd:MTH00197 76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 168 MGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTlMTTWTKVPSLNAMLF-L 246
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLgL 231
|
250 260
....*....|....*....|....
gi 307829184 247 TLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSL 255
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
14-276 |
4.06e-34 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 130.62 E-value: 4.06e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 14 LLGTTITITSNHWIMAWAGLEINTLAILPMIS-KTHHPRSVEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQL-- 89
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 90 ---THPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLFMTSPSLNP---T 152
Cdd:COG1007 191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 153 LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAI-IIAYNPK-LTLLNFYL--YTLMTTAVFLTLNTIKTP--- 225
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLgLAAGTPLgVSAALFYLlaYLFMNLGAFAVILLLSRKgge 350
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 307829184 226 --NLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:COG1007 351 aeEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLY 403
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-267 |
1.95e-30 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 118.59 E-value: 1.95e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 13 LLLGTTITITSNHWIMAWAGLEINTLAILPMI-SKTHHPRSVEAATKYFLTQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 79 WHTGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNptLLTCMA 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 159 VLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNP----KLTLLNFYLYTLMTTAVF---LTLNTIKTPnLSTLM 231
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFS 238
|
250 260 270
....*....|....*....|....*....|....*.
gi 307829184 232 TTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 239 GLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-281 |
8.27e-29 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 112.79 E-value: 8.27e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 23 SNHWIMAWAGLEINTLAILPMI-SKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 91 HPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPT------LLTCMAVLSTAL 164
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIIA----YNPKLTLLNFYLYTLMTTAVFL-----TLNTIKTPNLSTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLAK 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 307829184 236 KVPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATA 281
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLA 286
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
14-279 |
9.60e-28 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 112.99 E-value: 9.60e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 14 LLGTTITITSNHWIMAWAGLEINTLA--ILPMISKtHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH 91
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPlyALAALRR-DRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAK 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 92 PTSS------------LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLFMTSPSLNPT--- 152
Cdd:PRK05777 192 ALADgsgnsllllfglVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqq 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 153 LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTL--LNFYL--YTLMTTAVFLTLNTIKTP--- 225
Cdd:PRK05777 272 VLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRRKgge 351
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 307829184 226 --NLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAA 279
Cdd:PRK05777 352 aeSISDFAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLA 407
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
13-267 |
1.24e-27 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 112.42 E-value: 1.24e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 13 LLLGTTITITSNHWIMAWAGLEINTLAILPMIS-KTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI----T 87
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 88 QLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNpTLLTCmAVLSTALGGW 167
Cdd:MTH00199 186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN-VVLIC-AVLSIIYGAI 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 168 MGLNQTQIRKILAFSSISHLGWMAIIIAYNP----KLTLLNFYLYTLMTTAVFLTLNTIK--TPNLSTLMTTWTKVPSLN 241
Cdd:MTH00199 264 GALNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFSIILSLKltKGLIVEVSGLSRKNPVIA 343
|
250 260
....*....|....*....|....*.
gi 307829184 242 AMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-276 |
7.02e-26 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 107.73 E-value: 7.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 14 LLGTTITITSNHWIMAWAGLEINTLAILPMIS-KTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 93 TSSLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLP---PITLLFMT-----SPSLNPT 152
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYilfgfSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 153 LLTCmAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYL--YTLMTTAVFLTLNTIKTPN-- 226
Cdd:TIGR01770 272 LAII-AFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKde 350
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 307829184 227 ----LSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:TIGR01770 351 wieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLY 404
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
13-282 |
7.30e-22 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 95.60 E-value: 7.30e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 13 LLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 92
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 93 TSSL----------ILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIM-KLPP------ITLLFMTSPSLNP-TLL 154
Cdd:COG0651 196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 155 TCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLY----TLMTTAVFLTLNTI----KTPN 226
Cdd:COG0651 276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIeratGTRD 355
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 307829184 227 LSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:COG0651 356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-263 |
9.72e-19 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 86.98 E-value: 9.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 51 RSVEAATKYFLTQAAASALVL--FSSM--TNAWHTGQWDI------TQLTHPTSSLI----LTSAIAMKLGLVPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 117 EVLQGSPLTTGLLLSTIMKLPP-------ITLLFMTSPSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGW 189
Cdd:CHL00049 239 DVYEGSPTPVVAFLSVTSKVAAsalatriFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGY 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 190 MAI-IIAYNPK------LTLLNFYLYTLMTTAVFLTLNTIKT--PNLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGF 260
Cdd:CHL00049 319 VIIgIIVGDSNdgyasmITYMLFYIFMNLGTFACIVLFGLRTgtDNIRDYAGLYTKDPFLALSLALCLLSLGGIPPLAGF 398
|
...
gi 307829184 261 LPK 263
Cdd:CHL00049 399 FGK 401
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
15-267 |
1.81e-18 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 86.45 E-value: 1.81e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 15 LGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSV---------EAATKYFLTQAAASALVLFSSMTNAWHTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 84 --WDITQLTHPTSS----------LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLfmTSPSLNP 151
Cdd:MTH00198 279 mlGTILSATLETTNielrqgslgyLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 152 TLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLM----TTAVFLTLNTIK---- 223
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsALASFTVICTLEefgt 436
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 307829184 224 -----------------TPNLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 437 rtptsrqrdgsfgnynlVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
50-263 |
5.60e-18 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 84.72 E-value: 5.60e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 50 PRSVEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQLTHPTSSLI-------------LTSAIAMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 116 PEVLQGSPLTTGLLLSTIMKLP----PITLLFMTSPSLNP---TLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 189 WMAI--IIAYNPKLTLLNFYL--YTLMTTAVF--LTLNTIKT--PNLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGF 260
Cdd:PRK02504 314 FVMIglVAGTEAGYASMVFYLlaYLFMNLGAFacVILFSLRTgtDQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGF 393
|
...
gi 307829184 261 LPK 263
Cdd:PRK02504 394 FGK 396
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
49-282 |
3.08e-13 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 70.11 E-value: 3.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 49 HPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLTHPTSSLILTSAI--------AMKLGLVPFHFWFPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPLTAQLLLflaffiafAVKVPMFPFHTWLPDA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 119 LQGSPLTTGLLLSTIM-KLP-------PITLLFMTSPSLNPTLLTcMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1008 236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 191 AI-IIAYNPK------LTLLNFylyTLMTTAVFLTLNTI----KTPNLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTG 259
Cdd:COG1008 315 LLgIFALNPLglqgavLQMVSH---GLITAALFLLVGVLydrtHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSG 391
|
250 260
....*....|....*....|...
gi 307829184 260 FLPKWLIIQELTKQDMIPAATAI 282
Cdd:COG1008 392 FVGEFLVLLGAFQVNPWLAILAA 414
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
34-282 |
1.01e-11 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 65.79 E-value: 1.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 34 EINTLAILPMISKTHHpRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT-------QLTHPTSSLI----LTSAI 102
Cdd:PRK08668 128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 103 AMKLGLVPFHFWFPE-----------VLQGSPLTTG-----LLLSTIM--KLPPITLLFMTSPSLNpTLLTCMAVLSTAL 164
Cdd:PRK08668 207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygflLVLYVLPgtKLFSEFGTYRGVPLFN-YILAWLGNISIIV 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLT----LLNFYLYTLMTTAVFLTLNTI----KTPNLSTLMTTWTK 236
Cdd:PRK08668 286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 307829184 237 VPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:PRK08668 366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMA 411
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-266 |
2.72e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 64.35 E-value: 2.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 33 LEINTLAILPMIS-KTHHPRSVEAATKYFLTQAAASALVLFS---------SMTNAWHTGQWDITQLTHPTSSL-ILTSA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 102 IAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTIMKLPPITLLFMT--SPSLNPT----LLTCMAVLSTALGGWMGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALARVLFSiyGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 174 QIRKILAFSSISHLGWMAI-----IIAY-NPKLT----------LLNFYLYTLMTTAVFLT----LNTIKTPNLSTLMTT 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLglgvgLAALgDPAMAsygeialaggIYHIVNHALYKALLFLTagavIYETGTRNLNELGGL 389
|
250 260 270
....*....|....*....|....*....|...
gi 307829184 234 WTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
92-268 |
6.98e-10 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 59.96 E-value: 6.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 92 PTSSLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTIMKLPPI-------TLLFMTSPSLNPTLLTCMAVLSTAL 164
Cdd:PRK12663 207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYLYTLMT--TAVFLTLNTIK----TPNLSTLMTTWTK 236
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPAGINGaiFYLVHDMVvkTALFLIAGSLVrltgYRSLQYLGGLYRK 365
|
170 180 190
....*....|....*....|....*....|..
gi 307829184 237 VPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12663 366 EPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
97-282 |
1.03e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 59.51 E-value: 1.03e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 97 ILTSAIAMKLGLVPFHFWFPEVLQG-SPLTTGLLLSTIMKLPP----------ITLLFMTSPSLNpTLLTCMAVLSTALG 165
Cdd:PRK08375 207 FVLLALALKAAVFPLHTWLPRAYPAaPPVVTALLSGLVTKVAVyaliriyftvFGGDFRFALGLG-WLLAVLALLSMLVG 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 166 GWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLN--FYL--YTLMTTAVFLTLNTI----KTPNLSTLMTTWTKV 237
Cdd:PRK08375 286 SLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRM 365
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 307829184 238 PSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAATAI 282
Cdd:PRK08375 366 PLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
50-268 |
1.41e-09 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 59.18 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 50 PRSVEAATKYFLTQAAASALVLFSSMTNAW-HTGQWDITQL-THPTSS-------LILTSAIAMKLGLVPFHFWFPEVLQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAHV 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 121 GSPLTTGLLLSTIM-KLPPITLLFMTSPsLNP-------TLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:TIGR01972 232 EAPTAGSVILAGVLlKMGTYGFLRFNLP-LFPdaslyfaPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 193 IIAYNPKLTLLNFYLYT----LMTTAVFLTLNTI----KTPNLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKW 264
Cdd:TIGR01972 311 GIFSFNELGISGAVFQMishgLITAALFLLVGVLyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEF 390
|
....
gi 307829184 265 LIIQ 268
Cdd:TIGR01972 391 LILL 394
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
96-263 |
2.38e-09 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 58.78 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 96 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLL------FMTSPSLNPTLLTcMAVLSTALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 170 LNQTQIRKILAFSSISHLGWMAIIIAYNPK------LTLLnfYLYTLMTTAVFLTLNTIK----TPNLSTLMTTWTKVPS 239
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIDhstgTRDIRKLSGLGRRQPV 363
|
170 180
....*....|....*....|....
gi 307829184 240 LNAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12644 364 LAVVAALAAASMAGLPPLLGFVAK 387
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
8-279 |
5.60e-09 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 57.25 E-value: 5.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 8 IFTTSLLLgttiTITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSS----------MTN 77
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 78 AWHTGQW-DITQLTHPTSSLILTSAIAM-------KLGLVPFHFWFPEVLQGSP-----LTTGLLLST-IMKLPPITLLF 143
Cdd:PRK06458 192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVaLYAVLRYYILI 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 144 MTSPSLNP--TLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTLM----TTAVFL 217
Cdd:PRK06458 272 DAAIGSDFpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNhsltKSAIFF 351
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 307829184 218 T----LNTIKTPNLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIPAA 279
Cdd:PRK06458 352 AsgnvLQKYGTRDINVIRGLLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIA 417
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
48-270 |
7.39e-09 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 57.08 E-value: 7.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 48 HHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----THPTSSLILTSAIAM------KLGLVPFHFWFP 116
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLP 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 117 EVLQG-SPLTTgLLLSTIMKLPPITLLFMTSP--SLNPTLLTCMAV--LSTAL-GGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:COG1009 236 DAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYM 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 191 AIIIAynpkLTLLNFYLYTLMTTAVF------------LTLNTIKTPNLSTLmttWTKVPSLNAMLFLTLLSLAGLPPLT 258
Cdd:COG1009 315 FLALG----VGAYVAALFHLLTHAFFkallflgagsviHATGTRDIRKMGGL---RKKMPITAITFLIGALSLAGIPPFA 387
|
250
....*....|..
gi 307829184 259 GFLPKWLIIQEL 270
Cdd:COG1009 388 GFFSKEAILEAA 399
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
96-267 |
8.20e-09 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 56.67 E-value: 8.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 96 LILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITL------------LFMTSPSLNpTLLTCMAVLSTA 163
Cdd:PRK12662 213 LFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIV 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLY----TLMTTAVFLTLNTIK----TPNLSTLMTTWT 235
Cdd:PRK12662 292 FGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWK 371
|
170 180 190
....*....|....*....|....*....|..
gi 307829184 236 KVPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 372 SMPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
86-268 |
1.80e-08 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 55.73 E-value: 1.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 86 ITQLTHPTSSLILTSAI------AMKLGLVPFHFWFPEVLQGSP---------LTTGLLLSTIMKLppITLLFMTSPSLN 150
Cdd:PRK07691 197 IAELSAGQTGLITVVAIlflfvfATKAGLFPLYFWLPGSYYAPPiaiaalfgaLLTKVGVYAIART--FTLFFSHDTSFT 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 151 PTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYT----LMTTAVFLTLNTI---- 222
Cdd:PRK07691 275 HYLILILALLTIIFGVIGAVAYFDIKKIIIYNIMIAVGVILVGVAMMTESGMIGAIYYLihdmIVKAALFLLIGIMikit 354
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 307829184 223 KTPNL---STLMTTWtkvPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK07691 355 GTTDLkkmGGLIKRY---PVLGWMFFIAALSLAGIPPLSGFYGKFFIVE 400
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
109-266 |
4.61e-08 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 54.54 E-value: 4.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 109 VPFHFWFPEVLQG-SPLTTGLLLSTIMKLPpITLLFMTSPSLNPT-----LLTCMAVLSTALGGWMGLNQTQIRKILAFS 182
Cdd:PRK12647 212 FPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYS 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 183 SISHLGWMAIIIAYNPKLTLLNFYLY----TLMTTAVFLTLNTIK----TPNLSTLMTTWTKVPSLNAMLFLTLLSLAGL 254
Cdd:PRK12647 291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALSMAGL 370
|
170
....*....|..
gi 307829184 255 PPLTGFLPKWLI 266
Cdd:PRK12647 371 PPLFGFLAKELI 382
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
80-263 |
3.39e-07 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 51.97 E-value: 3.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 80 HTGQW-DITQLTHPTSSLILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSL--NPT---L 153
Cdd:PRK12650 196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 154 LTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYT----LMTTAVFLTLNTIK----TP 225
Cdd:PRK12650 275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVVDhqagTR 354
|
170 180 190
....*....|....*....|....*....|....*...
gi 307829184 226 NLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPK 263
Cdd:PRK12650 355 DIRRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
34-268 |
6.98e-07 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 50.80 E-value: 6.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 34 EINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQ-----LTHPTSSLILTSAIAMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 109 V------PFHFWFPEVLQGSPLTTGLLLSTIMKLPPITL------LFMTSPSLNP--TLLTCMAVLSTALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALmlvifkLFGGLSYFPSaqGVLIALSVLAMVFGVVMALLQTD 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 175 IRKILAFSSISHLGWMAIIIAYNPKLTL-------LNFYLYTlmtTAVFLTLNTI----KTPNLSTLMTTWTKVPSLNAM 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYK---SALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFM 366
|
250 260
....*....|....*....|....*
gi 307829184 244 LFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQ 391
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
55-268 |
1.04e-06 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 50.10 E-value: 1.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 55 AATKYFLTQAAASALVLFSSMTNAWHTGQWD------ITQLTHPTSSLILTSAI----AMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK07363 158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 124 LTTGLLLSTIMKLPPITL------LFMTSPSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN 197
Cdd:PRK07363 238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 198 PKLTLLN---------------FYLYTLMTTAVfltlNTIKTPNLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLP 262
Cdd:PRK07363 318 TQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393
|
....*.
gi 307829184 263 KWLIIQ 268
Cdd:PRK07363 394 EFIVFQ 399
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
96-268 |
1.36e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 49.97 E-value: 1.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 96 LILTSAIAMKLGLVPFHFWFPEVLQG--SPLTT---GLLlsTIMKLPPI----TLLFmTSPSLNpTLLTCMAVLSTALGG 166
Cdd:PRK12665 213 AVLLVAFGIKAAVFPLSFWLPDSYPTapAPVTAvfaGLL--TKVGVYAIirthTLLF-PGGGLD-TLLMVVALLTMVVGI 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 167 WMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYT----LMTTAVFLTLNTIK----TPNLSTLMTTWTKVP 238
Cdd:PRK12665 289 LGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTVAGLSGAIYYVahhiTVQTTLFLVVGLIErqagSSSLRRLGGLAKASP 368
|
170 180 190
....*....|....*....|....*....|
gi 307829184 239 SLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:PRK12665 369 LLAVLFFVPALNLGGIPPFSGFIGKVALLE 398
|
|
| ND5 |
MTH00032 |
NADH dehydrogenase subunit 5; Provisional |
105-268 |
2.21e-06 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 49.19 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 105 KLGLvpfHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSP-----SLNPTLLTCMAVLSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00032 241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPlfekaPLTLLIITIFGALTAFFAATVGLVQNDLKKVI 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 180 AFSSISHLGWMAIIIAY--NPKLTLLNFYLYTLMTTAVFLTLN------TIKTPNLSTLMTTWTKVPSLNAMLFLTLLSL 251
Cdd:MTH00032 318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHSIPFTYTMMLIGSFSI 397
|
170
....*....|....*..
gi 307829184 252 AGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 398 MGLPYLTGFYSKDLILE 414
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
110-277 |
2.55e-06 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 49.37 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 110 PFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPT-----LLTCMAVLSTALGGWMGLNQTQIRKILAFSSI 184
Cdd:PRK12646 228 PFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSnmyiyIVTFVGLITMLFGSITALKQWDLKGILAYSTI 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 185 SHLGW-MAII-----IAYNPKLTLLNFY-------LYTLMTTAVF---------LTLNTIKTPNLSTLMTTWTKVPSLNA 242
Cdd:PRK12646 308 SQLGMiMAMVgigggYAQHQQDAIASIYvfvlfaaLFHLMNHAIFkcalfmgvgIIDHEAGTRDIRILSGMRQLFPKMNL 387
|
170 180 190
....*....|....*....|....*....|....*
gi 307829184 243 MLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMIP 277
Cdd:PRK12646 388 VMTIAALSMAGVPFLNGFLSKEMFLDALTQTGQLS 422
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
13-210 |
2.75e-06 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 48.98 E-value: 2.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 13 LLLGTTITITSNHWIMAWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 87 TQLTHPTS----SLILTSAIAM------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPT---- 152
Cdd:PRK08676 191 TELAAHASllspSVLGASFLFIfigflaKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaae 270
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 307829184 153 ----LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTL 210
Cdd:PRK08676 271 qfsnVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHML 332
|
|
| PRK06459 |
PRK06459 |
hydrogenase 4 subunit B; Validated |
15-270 |
4.09e-06 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235806 [Multi-domain] Cd Length: 585 Bit Score: 48.25 E-value: 4.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 15 LGTTITITSNHWIMAWAGLEINTLAILPMISKthHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTS 94
Cdd:PRK06459 83 LGMAIVLTSDNYLLFLAGWEIMTIPSYVAIAL--TKKNKRPAFVFMAFGELSTVLILAGFAWAFIISGTTNFSYLPSPVP 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 95 SLILTSAIAMKLGLVPFHF--WFPEVLQGSPLTTGLLLSTIMKLPPI----TLLFMTSPSLNPTL---LTCMAVLSTALG 165
Cdd:PRK06459 161 LILASFGFIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVygilKMTILTQTIPIGYFgltILAIGAFSILFG 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 166 GWMGLNQTQIRKILAFSSISHLGWM-----AIIIAYNPKLTLLNFYLYTLMT---------TAVFLTLNTIKTPNLSTLM 231
Cdd:PRK06459 241 ALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILysfahsvakTGLFLSSGLQEKQSITYSK 320
|
250 260 270
....*....|....*....|....*....|....*....
gi 307829184 232 TTWTKVPSLNAmlFLTLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 321 KIRNRWIELGL--TLLASSLSGLLPNIGGVASWLLLESL 357
|
|
| PRK12649 |
PRK12649 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
48-263 |
4.16e-06 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 183649 [Multi-domain] Cd Length: 789 Bit Score: 48.67 E-value: 4.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 48 HHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSS---------------LILTSAiAMKLGLVPFH 112
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghplflitliLIFIGA-AAKSAQGPFY 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 113 FWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPT-----LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK12649 235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 188 GWMAIIIAYNPK------LTLLNFYLYTLMTTAVFLTL------NTIKTPNLSTLMTTWTKVPSLNAMLFLTLLSLAGLP 255
Cdd:PRK12649 315 AYLMTMYGYTTYhepglgVAAATFHLLNHATFKACLFLvagivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIP 394
|
....*...
gi 307829184 256 PLTGFLPK 263
Cdd:PRK12649 395 PLNGFLSK 402
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
55-266 |
8.23e-06 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 47.39 E-value: 8.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 55 AATKYFLTQAAASALVLFSSMTNAWHTG--QWDITQL---THPTSSLILTSA-----IAMKLGLVPFHFWFPEV-LQGSP 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 124 LTTGLLLSTIMKLPPITLL------FMTSPSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN 197
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 198 PKLTLLNFYL----YTLMTTAVFLTLNTI--KTPN-----LSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLI 266
Cdd:PRK06473 318 TPLSILAAVFqmisHGLISALLFLLVGVVykKTGSrdvdvLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
55-270 |
1.92e-05 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 46.26 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 55 AATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSSLILT-----SAIAMKLGLVPFHFWFPEVLQGSPLTTGLL 129
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 130 LSTIM-KLPPITLLFMTSPSLNPTLLTCMAVL-----STALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYNPKLTLL 203
Cdd:PRK08667 243 MSGVMlKVAVYGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIGIILMGIGLYVIFGVY 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 204 NFYLYTLMT--TAVFLTLN-----------------TIKTPNLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667 323 GLDTLALLAlgGALFHSLNhalfksllfltagsvvhATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402
|
....*.
gi 307829184 265 LIIQEL 270
Cdd:PRK08667 403 LLYESF 408
|
|
| ND5 |
MTH00207 |
NADH dehydrogenase subunit 5; Provisional |
82-268 |
2.36e-05 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 45.91 E-value: 2.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 82 GQWDITQLTHPTSSLILTSAI---AM-KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLL-----FMTSPSLNPT 152
Cdd:MTH00207 165 GHWSITNMWQTDMNNYIALSImiaAMtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 153 LLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN-PKLTLLNFYLYTLMTTAVFLTLNTI-----KTPN 226
Cdd:MTH00207 245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGmPKLALFHLITHALFKALLFVCAGSLihshhHSQD 324
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 307829184 227 LSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207 325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
50-195 |
3.47e-05 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 45.58 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 50 PRSVEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQLTHPTSS--------LILTSAIAMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNLPLPpgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 118 VLQGSPLTTGLLLSTIM-----------KLPpitlLFMTSPSLNPTLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISH 186
Cdd:PRK05846 237 AHVQAPTAGSVLLAGILlkmgaygllrfSLP----LFPDASHEFAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISH 312
|
....*....
gi 307829184 187 LGWMAIIIA 195
Cdd:PRK05846 313 MGFVTLGIF 321
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-271 |
5.31e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 44.94 E-value: 5.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 33 LEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH--PTSSLILTSAIAMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 111 FHFWFPEVLQGSPLTTGLLLSTIM---KLPPITLLFMTSPSLNPtLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHL 187
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 188 GWmaIIIAynPKLTLLNFYLYTLMTTAVFLTLNTIKTPNLSTLMTTWTKVpSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK07234 282 GF--ILAA--PLVGGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGI-GKWIPLTMASFSIAGFPLLAGFVSKVLTL 356
|
....
gi 307829184 268 QELT 271
Cdd:PRK07234 357 KNLL 360
|
|
| ND5 |
MTH00020 |
NADH dehydrogenase subunit 5; Reviewed |
111-268 |
7.50e-05 |
|
NADH dehydrogenase subunit 5; Reviewed
Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 44.30 E-value: 7.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 111 FHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSP--SLNPTLL---TCMAVLSTALGGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALiivTIVGSLTVFFAATVGLVQNDLKKVIAYSTCS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 186 HLGWMAIIIAynpkltlLNFY---LYTLMTTAVFLTL----------------NTIKTPNLSTLmttwtkVPSLNAMLFL 246
Cdd:MTH00020 309 QLGYMVVACG-------LSHYsisLFHLMNHAFFKALlflsagsvihalsdeqDMRKMGGLISF------LPLTYIFFLI 375
|
170 180
....*....|....*....|..
gi 307829184 247 TLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00020 376 GSLSLMGFPYLTGFYSKDLILE 397
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
55-195 |
8.14e-05 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 44.25 E-value: 8.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 55 AATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLT--HPTSSLILTS------AIAMKLGLVPFHFWFPE------- 117
Cdd:PRK12561 138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGakSYPLALELLLyagfliAFGVKLPIFPLHTWLPDahgeasa 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 118 ----VLQGSPLTTG---LLLSTIMKLPPITLLFmtSPslnptLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK12561 218 pvsmILAGVLLKMGgyaLIRFNVQMLPDAHVYF--AP-----ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFV 290
|
....*
gi 307829184 191 AIIIA 195
Cdd:PRK12561 291 LLGIA 295
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
295-340 |
1.17e-04 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 39.16 E-value: 1.17e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 307829184 295 RLAYCATITLPPHTTNHMKRWHINKPTSTT-IAILMVLSTMLLPISP 340
Cdd:pfam06444 5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
101-267 |
1.26e-04 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 43.76 E-value: 1.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 101 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTI-MKLPPITLLFMTSP-------SLNPTLLTcMAVLSTALGGWMGLNQ 172
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVIA-MGIVGIVYGSFATCRQ 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 173 TQIRKILAFSSISHLGWMAIIIAYNPKLTLLNFYLYTL---MTTAVFLTLNTIKTPNLSTLMTTWTK-----VPSLNAML 244
Cdd:MTH00226 318 IDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLahgIVSSLLFILVTILYDRHHTRLIKYYRglsitMPIWGTIM 397
|
170 180
....*....|....*....|...
gi 307829184 245 FLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00226 398 IVTSLANVAVPPSGNFIGEYLSI 420
|
|
| ND5 |
MTH00066 |
NADH dehydrogenase subunit 5; Provisional |
75-197 |
5.43e-04 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214416 [Multi-domain] Cd Length: 598 Bit Score: 41.82 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 75 MTNAW---HTGQWDITQL-------THPTSSLILtsAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFM 144
Cdd:MTH00066 182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLIL--AAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIR 259
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 307829184 145 TSPSL--NPTLLT---CMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN 197
Cdd:MTH00066 260 FHPLLenNQTALTiclCLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLN 317
|
|
| PRK08042 |
PRK08042 |
formate hydrogenlyase subunit 3; Reviewed |
107-272 |
8.61e-04 |
|
formate hydrogenlyase subunit 3; Reviewed
Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 40.97 E-value: 8.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 107 GLVPFHFWFPEVLQGSPLTTGLLLSTI-MKLPPITLLFMTSPSLNPTL-----LTCMAVLSTALGGWMGLNQTQIRKILA 180
Cdd:PRK08042 195 GIIPLHGWVPQAHANASAPAAALFSTVvMKIGLLGILTLSLLGGNAPLwwgvaLLVLGMITAFVGGLYALMEHNIQRLLA 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 181 FSSISHLGWMAI--------IIAYNPKLTLLNFY--LY-----TLMTTAVFLTLNTI----KTPNLSTLMTTWTKVPSLN 241
Cdd:PRK08042 275 YHTLENIGIILLglgagvtgIALEQPALIALGLVggLYhllnhSLFKSVLFLGAGSVwfrtGHRDIEKLGGIGKKMPVIS 354
|
170 180 190
....*....|....*....|....*....|.
gi 307829184 242 AMLFLTLLSLAGLPPLTGFLPKWLIIQELTK 272
Cdd:PRK08042 355 IAMLVGLMAMAALPPLNGFAGEWVIYQSFFK 385
|
|
| PRK07376 |
PRK07376 |
NADH-quinone oxidoreductase subunit L; |
54-263 |
1.69e-03 |
|
NADH-quinone oxidoreductase subunit L;
Pssm-ID: 236005 [Multi-domain] Cd Length: 673 Bit Score: 40.39 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 54 EAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSSLILTSAIAMKLGLV----------------PFHFWFPE 117
Cdd:PRK07376 173 DAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWLPD 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 118 VLQGSPLTTGLLLSTIMKLPPITLLFMTSP--SLNPTLLTCMAVLSTA---LGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK07376 253 AMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYMVM 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 193 ---IIAYNPKltllnfyLYTLMTTAVF---LTLNTIKT-----------PNLST---LMTTWTKVPSLNAMLFLT-LLSL 251
Cdd:PRK07376 333 amgCGAYSAG-------LFHLMTHAYFkamLFLGSGSVihgmeevvghdPVLAQdmrLMGGLRKYMPITAITFLIgCLAI 405
|
250
....*....|..
gi 307829184 252 AGLPPLTGFLPK 263
Cdd:PRK07376 406 SGIPPFAGFWSK 417
|
|
| ND5 |
MTH00211 |
NADH dehydrogenase subunit 5; Provisional |
68-267 |
2.71e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214459 [Multi-domain] Cd Length: 597 Bit Score: 39.55 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 68 ALVLFSSMTNAWHTGQWDITQLTHPTSSLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSP 147
Cdd:MTH00211 180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 148 SLNP-----TLLTCMAVLSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIAYN-PKLTLlnFYLYT--------LMTT 213
Cdd:MTH00211 260 LFQNnqlilGAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNqPQLAF--LHICThaffkamlFMCS 337
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 307829184 214 AVFL-TLNTI----KTPNLSTLMttwtkvPSLNAMLFLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00211 338 GSIIhGLNNEqdirKMGGLSKNL------PFTSSCLFLGSLALMGFPFLSGFFSKDLIL 390
|
|
| ND5 |
MTH00208 |
NADH dehydrogenase subunit 5; Provisional |
111-266 |
4.02e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177251 [Multi-domain] Cd Length: 628 Bit Score: 39.18 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 111 FHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSPSLNPTLLTCMAVL----STAL-GGWMGLNQTQIRKILAFSSIS 185
Cdd:MTH00208 255 LHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTSPLISNSPWFLSLCLilgsLTALfAASTAISQHDIKKIIAYSTTS 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 186 HLGWMAIIIAYN-PKLTLLNFYLYTLMTTAVFLTLNTI-----------KTPNLSTLMttwtkvPSLNAMLFLTLLSLAG 253
Cdd:MTH00208 335 QLGLMVVAIGLNqPNLALFHICTHAFFKAMLFLCSGSIihslnneqdlrKMGGLSFLL------PVTSSCIILGSLALMG 408
|
170
....*....|...
gi 307829184 254 LPPLTGFLPKWLI 266
Cdd:MTH00208 409 TPFLAGFYSKDLI 421
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
9-276 |
5.65e-03 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 38.26 E-value: 5.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 9 FTTSLLLGTTITITSNHWIMaWAGLEINTLAILPMISKTHHPRSVEAATKYFLTQAAASALVLFSSMT---NAWHTGQWD 85
Cdd:PRK06589 122 FNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVIliyTKTGNLDFV 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 86 ITQLTHPTSSLILTSAIAMKLG---LVPFHFWFPEVLQGSPLTTGLLLSTIM----KLPPITLLFMTSPSLNPTLLTCM- 157
Cdd:PRK06589 201 SGGLFSKNQSIILLLMFIYGIAktaIFPVHSWLPAAMVAHYPVSALLHAVIVvktgLFCIYKILLYIFGLSYLQRIFAEf 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 158 ------AVLSTALGGWMGLNQTQIRKILAFSSISHLGW--MAIIIAYNPKLTLLNFYLYT--LMTTAVFLTLNTI----K 223
Cdd:PRK06589 281 nwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSIyslkK 360
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 307829184 224 TPNLSTLMTTWTKVPSLNAMLFLTLLSLAGLPPLTGFLPKWLIIQELTKQDMI 276
Cdd:PRK06589 361 EDQVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQP 413
|
|
| ND5 |
MTH00210 |
NADH dehydrogenase subunit 5; Provisional |
105-271 |
7.31e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177253 [Multi-domain] Cd Length: 616 Bit Score: 38.07 E-value: 7.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 105 KLGLvpfHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLFMTSP-----SLNPTLLTCMAVLSTALGGWMGLNQTQIRKIL 179
Cdd:MTH00210 227 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPlfegsPLALTIVTILGALTAFFAATVGVVQNDLKKVI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829184 180 AFSSISHLGWMAIIIAynpkltLLNFY--LYTLMTTAVFLTL------NTIKTPNLSTLMTTW----TKVPSLNAMLFLT 247
Cdd:MTH00210 304 AYSTCSQLGYMVMVCG------ISNYStsLFHLMNHAFFKALlflsagSVIHAVSDEQDMRKMggliKSIPFTYVMILIG 377
|
170 180
....*....|....*....|....
gi 307829184 248 LLSLAGLPPLTGFLPKWLIIqELT 271
Cdd:MTH00210 378 SLSLMGFPYLTGFYSKDLIL-ELT 400
|
|
| |
