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Conserved domains on  [gi|307829182|gb|ADN95196|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Rhipidura fuliginosa]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 9.16e-165

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.14  E-value: 9.16e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 307829182 321 VNISIAILTTLSIMLLPVSPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 9.16e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.14  E-value: 9.16e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 307829182 321 VNISIAILTTLSIMLLPVSPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 2.53e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 111.75  E-value: 2.53e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  14 LLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAWhTGQWDITQM-- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  90 ---THPASSLILTAAISM-------KLGLVPFHFWFPEVLQGSSLTTGLVLSTAVK----FPPITLLYMTSHSLNPE--- 152
Cdd:COG1007  191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADwql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 153 LLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTL--LNFYL--YSLMTAAVFLTLNSMK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 307829182 224 VLKLTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMI 281
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.89e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 1.89e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   23 SHHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   91 HPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLT-TGLVLSTAVKFPPITLLYMTS--HSLNPE---LLTAMAILSVAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  165 GGWMGLNQTQIRKILAFSSISHLGWMAIIV----IYNPKLTLLNFYLYSLMTAAVFLTLNS-----MKVLKLTTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 307829182  236 KSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIE 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 2.14e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 2.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   14 LLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   93 ASSLILT------------AAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVK---FPPITLLYMTS----HSLNPEL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  154 LTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLN--FYL--YSLMTAAVFLTLNSMKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 307829182  227 ---LTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMII 282
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 9.16e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.14  E-value: 9.16e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 307829182 321 VNISIAILTTLSIMLLPVSPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-345 5.49e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 380.04  E-value: 5.49e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....*
gi 307829182 321 VNISIAILTTLSIMLLPVSPMILTI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-346 2.84e-130

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 376.07  E-value: 2.84e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSlNPELLTAMAIL 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319

                        330       340
                 ....*....|....*....|....*..
gi 307829182 321 -VNISIAILTTLSIMLLPVSPMILTIV 346
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-345 1.04e-114

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 336.43  E-value: 1.04e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPhTTNHMK-KWH-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*..
gi 307829182 319 KPVNISIAILTTLSIMLLPVSPMILTI 345
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-345 1.20e-94

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 285.32  E-value: 1.20e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*
gi 307829182 321 VNISIAILTTLSIMLLPVSPMILTI 345
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFL 345
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-336 1.68e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 246.38  E-value: 1.68e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320

                        330
                 ....*....|....*.
gi 307829182 321 VNISIAILTTLSIMLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-345 3.75e-54

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 180.79  E-value: 3.75e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWh 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  81 tgqwdITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLymtSHSLNPELLTAMAIL 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCAtITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|....*
gi 307829182 321 vNISIAILTTLSIMLLPVSPMILTI 345
Cdd:MTH00160 312 -SLILNFLSFISLFGLILSSLLFLL 335
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-267 4.16e-44

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 154.27  E-value: 4.16e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   5 AKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  85 DitqmthpaSSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNP-ELLTAMAILSVA 163
Cdd:MTH00144  85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLnSMKVLKLTTLMTTWTKSPSLSSI 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLS 235

                        250       260
                 ....*....|....*....|....
gi 307829182 244 FLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVL 259
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-275 2.53e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 152.24  E-value: 2.53e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   7 LIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  87 TQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAILSVALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 167 WMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSLSSIFLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260
                 ....*....|....*....|....*....
gi 307829182 247 TLLSLAGLPPLTGFLPKWLIIEELTKQGM 275
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 8-275 3.46e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 135.96  E-value: 3.46e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   8 IFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197   2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  88 qMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHslNPELLTAMAILSVALGGW 167
Cdd:MTH00197  76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 168 MGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSLSSIFLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                        250       260
                 ....*....|....*....|....*...
gi 307829182 248 LLSLAGLPPLTGFLPKWLIIEELTKQGM 275
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNI 260
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 14-281 2.53e-27

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 111.75  E-value: 2.53e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  14 LLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAWhTGQWDITQM-- 89
Cdd:COG1007  112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  90 ---THPASSLILTAAISM-------KLGLVPFHFWFPEVLQGSSLTTGLVLSTAVK----FPPITLLYMTSHSLNPE--- 152
Cdd:COG1007  191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADwql 270

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 153 LLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTL--LNFYL--YSLMTAAVFLTLNSMK----- 223
Cdd:COG1007  271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 307829182 224 VLKLTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMI 281
Cdd:COG1007  351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 1.89e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 1.89e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   23 SHHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQM-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   91 HPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLT-TGLVLSTAVKFPPITLLYMTS--HSLNPE---LLTAMAILSVAL 164
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  165 GGWMGLNQTQIRKILAFSSISHLGWMAIIV----IYNPKLTLLNFYLYSLMTAAVFLTLNS-----MKVLKLTTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 307829182  236 KSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIE 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 13-267 2.52e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.03  E-value: 2.52e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  13 LLLGTTITISSHHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196   2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  79 WHTGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYmtSHSLNPELLTAMA 158
Cdd:MTH00196  82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 159 ILSVALGGWMGLNQTQIRKILAFSSISHLGW----MAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLK--LTTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgIEIGSFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                        250       260       270
                 ....*....|....*....|....*....|....*
gi 307829182 233 TWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
14-281 3.71e-24

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 102.59  E-value: 3.71e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  14 LLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQM--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  90 --THPASSLILTAAISM-------KLGLVPFHFWFPEVLQGSSLTTGLVLSTAVK---FPPIT-LLYMTSHSLNPE---L 153
Cdd:PRK05777 193 laDGSGNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 154 LTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTL--LNFYL--YSLMTAAVFLTLNSM-KVLKLT 228
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLrRKGGEA 352

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 307829182 229 TLMTTWT----KSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMI 281
Cdd:PRK05777 353 ESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 14-282 2.14e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 2.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   14 LLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   93 ASSLILT------------AAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVK---FPPITLLYMTS----HSLNPEL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  154 LTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLN--FYL--YSLMTAAVFLTLNSMKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 307829182  227 ---LTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMII 282
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 8-267 7.66e-20

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 90.08  E-value: 7.66e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   8 IFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  87 ----TQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNpeLLTAMAILSV 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 163 ALGGWMGLNQTQIRKILAFSSISHLGW----MAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLK--LTTLMTTWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                        250       260       270
                 ....*....|....*....|....*....|.
gi 307829182 237 SPSLSSIFLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 3-267 3.29e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 79.52  E-value: 3.29e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   3 PQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAI---------EAATKYFLVQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  74 SMTNAWHTGQ--------------WDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 140 TLLymTSHSLNPELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLY-------SLMT 212
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALAS 424

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 307829182 213 AAVFLTL------------------NSMKVLKLTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 13-282 4.24e-16

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 78.65  E-value: 4.24e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  13 LLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTHP 92
Cdd:COG0651  116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  93 ASSL----------ILTAAISMKLGLVPFHFWFPEVLQG-----SSLTTGLVLSTAV----KFppITLLYMTSHSLNP-E 152
Cdd:COG0651  196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAapspvSALLSGLLTKVGVyailRV--LTLLFGADPALFLgT 273

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 153 LLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAI-IVIYNPK-LTLLNFYL--YSLMTAAVFLTLNSMKVLKLT 228
Cdd:COG0651  274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLgLAGALFHLlnHALAKALLFLAAGAIERATGT 353

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 307829182 229 TLMTT----WTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMII 282
Cdd:COG0651  354 RDLDKlgglGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-263 3.62e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 66.95  E-value: 3.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  51 RAIEAATKYFLVQAAASALVL--FSSM--TNAWHTGQWDI------TQMTHPASSLI----LTAAISMKLGLVPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 117 EVLQGS-----------SLTTGLVLSTAVkfppITLLYmtsHSLNPE---LLTAMAILSVALGGWMGLNQTQIRKILAFS 182
Cdd:CHL00049 239 DVYEGSptpvvaflsvtSKVAASALATRI----FDIPF---YFSSNEwhlLLEILAILSMILGNLIAITQTSMKRMLAYS 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 183 SISHLGWMAIIVI-------YNPKLTLLNFYLyslmtaavFLTLNSMKVLKLTTLMT----------TWTKSPSLSSIFL 245
Cdd:CHL00049 312 SIGQIGYVIIGIIvgdsndgYASMITYMLFYI--------FMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLA 383

                        250
                 ....*....|....*...
gi 307829182 246 LTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 384 LCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-192 4.28e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 67.00  E-value: 4.28e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  50 PRAIEAATKYFLVQAAASALVLF-SSMTNAWHTGQwdiTQMTHPASSLI-------------LTAAISMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 116 PEVLQGSSLTTGLVLSTAVKFP----PITLLYMTSHSLNPE---LLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                 ....
gi 307829182 189 WMAI 192
Cdd:PRK02504 314 FVMI 317
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-268 1.26e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 62.42  E-value: 1.26e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  33 LEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSmtnAWHTGQWDITQMTHPASSL-------------IL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  99 TAAISMKLGLVPFHFWFPEVLQG--SSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTA------MAILSVALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAV 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 171 NQTQIRKILAFSSISHLGWM------AIIVIYNPKLT----------LLNFYLYSLMTAAVFLT------------LNSM 222
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyetgtrnLNEL 386

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 307829182 223 KVLKLTTLMTTWTkspslssiFLLTLLSLAGLPPLTGFLPKWLIIE 268
Cdd:PRK08376 387 GGLARTMPKTTIA--------FLIGAAAIVGLPPFNGFASKWLIYE 424
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 3.10e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 58.17  E-value: 3.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  49 HPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQW--DITQMTHPASS--------LILTAAISMKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPltaqlllfLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 119 LQGSSlTTGLVLSTAV----------KFPpITLLYMTSHSLNPeLLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:COG1008  236 HVEAP-TAGSVLLAGVllkmggygllRFA-LPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312


                 ....
gi 307829182 189 WMAI 192
Cdd:COG1008  313 FVLL 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-282 1.37e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 52.96  E-value: 1.37e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  33 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFS-SMTNAwHTGQWDITQMTH--PASSLILTA------AIS 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 104 MKLGLVPFHFWFPEVLQGSSLTTGLVLS-TAVKFP--PITLLYMT-------SHSLNPELLTAMAILSVALGGWMGLNQT 173
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAvyALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 174 QIRKILAFSSISHLGWMAIIVIYNPKLTLLN--FYL--YSLMTAAVFLTLNSMKVLKLTTLMTTWT----KSPSLSSIFL 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTYGTRRLSELSglgrRMPLTAAAFA 373

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 307829182 246 LTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMII 282
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-267 2.23e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.25  E-value: 2.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   50 PRAIEAATKYFLVQAAASALVLFSSMTNAWHTG------QWDITQMTHPASSLILTA---AISMKLGLVPFHFWFPEVlQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDA-H 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  121 GSSLTTGLVLSTAV--KFPP-------ITLLYMTSHSLNPeLLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMA 191
Cdd:TIGR01972 231 VEAPTAGSVILAGVllKMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  192 IIVIYNPKLTLLN--FYLYS--LMTAAVFLTLNSMKVLKLTTLMTT----WTKSPSLSSIFLLTLLSLAGLPPLTGFLPK 263
Cdd:TIGR01972 310 LGIFSFNELGISGavFQMIShgLITAALFLLVGVLYERAHTRDIAKygglANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389


                  ....
gi 307829182  264 WLII 267
Cdd:TIGR01972 390 FLIL 393
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 295-340 8.55e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 45.33  E-value: 8.55e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 307829182  295 RLAYCATITLPPHTTNHMKKWHTNKPVNI-SIAILTTLSIMLLPVSP 340
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 2-282 2.14e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.22  E-value: 2.14e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   2 NPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHpRAIEAATKYFLVQAAASALVLFSSMTNAWHT 81
Cdd:PRK08668  96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  82 GQWDIT-------QMTHPASSLI----LTAAISMKLGLVPFHFWFPE-----------VLQGSSLTTG---LVLSTAVkF 136
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYV-L 253

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 137 PPITLLY----MTSHSLNPELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWmaiIVIYNPKLTLLNF------- 205
Cdd:PRK08668 254 PGTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhv 330

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 206 YLYSLMTAAVFLTLNSMKVLKLTTLMTTW----TKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMI 281
Cdd:PRK08668 331 FNHALFKGLFFLIFAAVIYRTGTTKISEMggliEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFM 410


                 .
gi 307829182 282 I 282
Cdd:PRK08668 411 A 411
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 8-192 3.37e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.39  E-value: 3.37e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   8 IFVTSLLLgttiTISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSS----------MTN 77
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  78 AWHTGQW-DITQMTHPASSLILTAAISM-------KLGLVPFHFWFPEVLQG-----SSLTTGLVLSTA----VKFPPIT 140
Cdd:PRK06458 192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNVAlyavLRYYILI 271

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 307829182 141 LLYMTSHSLNPeLLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK06458 272 DAAIGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 5.87e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.89  E-value: 5.87e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  50 PRAIEAATKYFLVQAAASALVLFSSMTNAWH----TGQWDITQ-MTHPASS-------LILTAAISMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 118 VLQ-----GSSLTTGLVLSTA----VKFPpITLLYMTSHSLNPeLLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                 ....
gi 307829182 189 WMAI 192
Cdd:PRK05846 315 FVTL 318
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 48-190 1.32e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 46.68  E-value: 1.32e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  48 HHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTHPASS------------LILTAAISmKLGLVPFHFWF 115
Cdd:COG1009  156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTilssplltlillLLLLGAFG-KSAQFPLHFWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 116 PEVLQG----SSL-------TTGLVLstAVKFPPITllymtshSLNPELLTAMAILSVA---LGGWMGLNQTQIRKILAF 181
Cdd:COG1009  235 PDAMEGptpvSALlhaatmvKAGVYL--LARLSPLF-------ALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAY 305


                 ....*....
gi 307829182 182 SSISHLGWM 190
Cdd:COG1009  306 STVSQLGYM 314
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-272 4.16e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.11  E-value: 4.16e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  33 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFS-----SMTNAWHTGqwDITQMTHP--------ASSLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 100 AAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITL------------LYMTSHSLNPELLTaMAILSVALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFNNVFMI-LAALAIVFGSV 295

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 168 MGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLY----SLMTAAVFLTLNSMK----VLKLTTLMTTWTKSPS 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                        250       260       270
                 ....*....|....*....|....*....|...
gi 307829182 240 LSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTK 272
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 6.45e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 44.75  E-value: 6.45e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  13 LLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  87 TQMTHPASSL---ILTAAISM-------KLGLVPFHFWFPEV-LQGSSLTTGLVLSTAVKFPPITLLYMTS-------HS 148
Cdd:PRK08676 191 TELAAHASLLspsVLGASFLFifigflaKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 307829182 149 LNPELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 34-192 1.41e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 43.48  E-value: 1.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  34 EINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQ--WDITQ--MTHPASSLILTA------AIS 103
Cdd:PRK12561 117 ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAElgAKSYPLALELLLyagfliAFG 196

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 104 MKLGLVPFHFWFPEVLQGSSLTTGLVLSTavkfppiTLLYMTSHSL---NPELLT--------AMAILSVA---LGGWMG 169
Cdd:PRK12561 197 VKLPIFPLHTWLPDAHGEASAPVSMILAG-------VLLKMGGYALirfNVQMLPdahvyfapALAILGVVniiYGALNA 269

                        170       180
                 ....*....|....*....|...
gi 307829182 170 LNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK12561 270 FAQDNVKRRLAYSSVSHMGFVLL 292
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 2-282 2.61e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 42.50  E-value: 2.61e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182   2 NPQAKLIFVTSLLLGTTITISSHhWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVqAAASALVLFSS----MTN 77
Cdd:PRK06589 115 SSRFLFFFNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFLPavilIYT 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  78 AWHTGQWDITQMTHPASSLILTAAISMKLG---LVPFHFWFPEVLQG----SSLTTGLVLSTAVKFPPITLLYMTSHSLN 150
Cdd:PRK06589 193 KTGNLDFVSGGLFSKNQSIILLLMFIYGIAktaIFPVHSWLPAAMVAhypvSALLHAVIVVKTGLFCIYKILLYIFGLSY 272

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 151 PELLTAM-------AILSVALGGWMGLNQTQIRKILAFSSISHLGW--MAIIVIYNPKLTLLNFYL--YSLMTAAVFLTL 219
Cdd:PRK06589 273 LQRIFAEfnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLvsHSFAKICLFYSM 352

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 307829182 220 NSMKVLK----LTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMII 282
Cdd:PRK06589 353 GSIYSLKkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIV 419
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-194 2.62e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 42.99  E-value: 2.62e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  96 LILTAAISmKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLL------YMTSHSLNPELLTaMAILSVALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285

                         90       100
                 ....*....|....*....|....*
gi 307829182 170 LNQTQIRKILAFSSISHLGWMAIIV 194
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLV 310
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 3.51e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.25  E-value: 3.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  33 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDIT--QMTHPASSLILTAAISMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 111 FHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNP--ELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGldLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 189 WMAIIVIYNPKLTLLnfylYSLMTAAVFLTLNSMKVLKLTTL----MTTWTKSPSLSSIFLLTLLslaglPPLTGFLPKW 264
Cdd:PRK07234 283 FILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNFTELisqmLGIGKWIPLTMASFSIAGF-----PLLAGFVSKV 353


                 ....*..
gi 307829182 265 LIIEELT 271
Cdd:PRK07234 354 LTLKNLL 360
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-268 3.80e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 42.06  E-value: 3.80e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  82 GQWDITQMTHPASSLILTAAISM----KLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLL-----YMTSHSLNPE 152
Cdd:MTH00207 165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 153 LLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG-WMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVL-----K 226
Cdd:MTH00207 245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHShhhsqD 324

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 307829182 227 LTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIE 268
Cdd:MTH00207 325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 3.90e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 42.41  E-value: 3.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  55 AATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTHPASSLILT-----AAISMKLGLVPFHFWFPEVLQG-----SSL 124
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPAspsnvSAL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 125 TTGLVLSTAVkfppITLLYMTSHSLNPELLTAMAIL-----SVALGGWMGLNQTQIRKILAFSSISHLGwmaiIVIYNPK 199
Cdd:PRK08667 243 MSGVMLKVAV----YGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIG----IILMGIG 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 200 LTLLnFYLYSLMT-------AAVFLTLNS--MKVLKLTT----LMTTWTKS-----------PSLSSIFLLTLLSLAGLP 255
Cdd:PRK08667 315 LYVI-FGVYGLDTlallalgGALFHSLNHalFKSLLFLTagsvVHATGTRNiekmgglvklmPYTSALFLVGAVSIAALP 393

                        250
                 ....*....|....*
gi 307829182 256 PLTGFLPKWLIIEEL 270
Cdd:PRK08667 394 PFNGFASELLLYESF 408
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
95-267 5.07e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 41.86  E-value: 5.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  95 SLILTAAISMKLGLVPFhFWFPevlqGSSLTTGLVLSTA-----------VKFPPITLLYMTSHSLNPELLTAMAILSVA 163
Cdd:PRK12663 210 ALLFLLAFGMKAALFPF-MWLP----AAYHTPNTEVAALfaalltkvgiyALIRVFTLLFPQERELLHPLLATMAAITMV 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 164 LGGWMGLNQTQIRKILAFSSISHLGWM-AIIVIYNPK-LTLLNFYLYSLMT--AAVFLTLNSMKVL----KLTTLMTTWT 235
Cdd:PRK12663 285 IGALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYR 364

                        170       180       190
                 ....*....|....*....|....*....|..
gi 307829182 236 KSPSLSSIFLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12663 365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 1.70e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 101 AISMKLGLVPFHFWFPEV-----LQGSSLTTGLVLSTA------VKFPpitLLYMTSHSLNPELLtAMAILSVALGGWMG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                         90       100
                 ....*....|....*....|....*.
gi 307829182 170 LNQTQIRKILAFSSISHLGWMAIIVI 195
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 2.19e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 39.68  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  55 AATKYFLVQAAASALVLFSSMTNAWHTGQWDI---TQMTHP---ASSLILTAAISMKLG----LVPFHFWFPEV-LQGSS 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTlplSTQLLLLAPILVGFGikipLVPFHTWLPDAhVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 307829182 124 LTTGLVLSTAVKFPPITLL------YMTSHSLNPELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-281 7.25e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 38.09  E-value: 7.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182  34 EINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTH-----PASSLILTAAISMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 109 V------PFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLL-------YMTSHSLNPE-LLTAMAILSVALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMlvifklfGGLSYFPSAQgVLIALSVLAMVFGVVMALLQTD 289

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 175 IRKILAFSSISHLGWMAIIVIYNPKLTL-------LNFYLYslmTAAVFL----TLNSMKVLKLTTLMTTWTKSPSLSSI 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFM 366

                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 307829182 244 FLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMI 281
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAII 404
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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