|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
9.16e-165 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 463.14 E-value: 9.16e-165
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00112 1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00112 81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320
|
330 340
....*....|....*....|....*.
gi 307829182 321 VNISIAILTTLSIMLLPVSPMILTIV 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
5.49e-132 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 380.04 E-value: 5.49e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00070 1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00070 81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320
|
330 340
....*....|....*....|....*
gi 307829182 321 VNISIAILTTLSIMLLPVSPMILTI 345
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
1-346 |
2.84e-130 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 376.07 E-value: 2.84e-130
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00135 1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSlNPELLTAMAIL 160
Cdd:MTH00135 81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPST 319
|
330 340
....*....|....*....|....*..
gi 307829182 321 -VNISIAILTTLSIMLLPVSPMILTIV 346
Cdd:MTH00135 320 qLTLPLAISTTATLMLLPLTPAILALL 346
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
1.04e-114 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 336.43 E-value: 1.04e-114
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00105 1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00105 81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPhTTNHMK-KWH-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319
|
330 340
....*....|....*....|....*..
gi 307829182 319 KPVNISIAILTTLSIMLLPVSPMILTI 345
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSIL 346
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
1.20e-94 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 285.32 E-value: 1.20e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00200 1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00200 81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
|
330 340
....*....|....*....|....*
gi 307829182 321 VNISIAILTTLSIMLLPVSPMILTI 345
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFL 345
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
1-336 |
1.68e-79 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 246.38 E-value: 1.68e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWH 80
Cdd:MTH00041 1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 81 TGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAIL 160
Cdd:MTH00041 81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCATITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGN 320
|
330
....*....|....*.
gi 307829182 321 VNISIAILTTLSIMLL 336
Cdd:MTH00041 321 ITVYGVILSILSSISI 336
|
|
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-345 |
3.75e-54 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 180.79 E-value: 3.75e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 1 MNPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWh 80
Cdd:MTH00160 2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 81 tgqwdITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLymtSHSLNPELLTAMAIL 160
Cdd:MTH00160 81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIIL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 161 SVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 241 SSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMIISLLSLLGLFFYLRLAYCAtITLPPHTTNHMKKWHTNKP 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311
|
330 340
....*....|....*....|....*
gi 307829182 321 vNISIAILTTLSIMLLPVSPMILTI 345
Cdd:MTH00160 312 -SLILNFLSFISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
5-267 |
4.16e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 154.27 E-value: 4.16e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 5 AKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQW 84
Cdd:MTH00144 5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 85 DitqmthpaSSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNP-ELLTAMAILSVA 163
Cdd:MTH00144 85 F--------SMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 164 LGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLnSMKVLKLTTLMTTWTKSPSLSSI 243
Cdd:MTH00144 157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLS 235
|
250 260
....*....|....*....|....
gi 307829182 244 FLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00144 236 IISLLLSLGGLPPFLGFCSKLLVL 259
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
7-275 |
2.53e-43 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 152.24 E-value: 2.53e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 7 LIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSmtnawhTGQWDI 86
Cdd:MTH00011 9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 87 TQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTAMAILSVALGG 166
Cdd:MTH00011 83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 167 WMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSLSSIFLL 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242
|
250 260
....*....|....*....|....*....
gi 307829182 247 TLLSLAGLPPLTGFLPKWLIIEELTKQGM 275
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSM 271
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
8-275 |
3.46e-37 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 135.96 E-value: 3.46e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 8 IFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTgqwdit 87
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 88 qMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHslNPELLTAMAILSVALGGW 167
Cdd:MTH00197 76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 168 MGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLKLTTLMTTWTKSPSLSSIFLLT 247
Cdd:MTH00197 153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232
|
250 260
....*....|....*....|....*...
gi 307829182 248 LLSLAGLPPLTGFLPKWLIIEELTKQGM 275
Cdd:MTH00197 233 FLSLGGLPPLSGFFLKWLILTSLLSSNI 260
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
14-281 |
2.53e-27 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 111.75 E-value: 2.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 14 LLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLF-SSMTNAWhTGQWDITQM-- 89
Cdd:COG1007 112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 90 ---THPASSLILTAAISM-------KLGLVPFHFWFPEVLQGSSLTTGLVLSTAVK----FPPITLLYMTSHSLNPE--- 152
Cdd:COG1007 191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAADwql 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 153 LLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTL--LNFYL--YSLMTAAVFLTLNSMK----- 223
Cdd:COG1007 271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 307829182 224 VLKLTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMI 281
Cdd:COG1007 351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
23-268 |
1.89e-24 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 100.85 E-value: 1.89e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 23 SHHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQM-----------T 90
Cdd:pfam00361 1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 91 HPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLT-TGLVLSTAVKFPPITLLYMTS--HSLNPE---LLTAMAILSVAL 164
Cdd:pfam00361 81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPvSALLAATLVKAGGYGLIRRSLlyLPSSPFiqqILLILAIISMLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 165 GGWMGLNQTQIRKILAFSSISHLGWMAIIV----IYNPKLTLLNFYLYSLMTAAVFLTLNS-----MKVLKLTTLMTTWT 235
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240
|
250 260 270
....*....|....*....|....*....|...
gi 307829182 236 KSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIE 268
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
13-267 |
2.52e-24 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 102.03 E-value: 2.52e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 13 LLLGTTITISSHHWITAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQAAASALVLFS-------------SMTNA 78
Cdd:MTH00196 2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 79 WHTGQWDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYmtSHSLNPELLTAMA 158
Cdd:MTH00196 82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 159 ILSVALGGWMGLNQTQIRKILAFSSISHLGW----MAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLK--LTTLMT 232
Cdd:MTH00196 160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFvlwgIEIGSFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239
|
250 260 270
....*....|....*....|....*....|....*
gi 307829182 233 TWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
14-281 |
3.71e-24 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 102.59 E-value: 3.71e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 14 LLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQM--- 89
Cdd:PRK05777 113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 90 --THPASSLILTAAISM-------KLGLVPFHFWFPEVLQGSSLTTGLVLSTAVK---FPPIT-LLYMTSHSLNPE---L 153
Cdd:PRK05777 193 laDGSGNSLLLLFGLVFllvglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 154 LTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTL--LNFYL--YSLMTAAVFLTLNSM-KVLKLT 228
Cdd:PRK05777 273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLrRKGGEA 352
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 307829182 229 TLMTTWT----KSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMI 281
Cdd:PRK05777 353 ESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
14-282 |
2.14e-21 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 94.63 E-value: 2.14e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 14 LLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTHP 92
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 93 ASSLILT------------AAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVK---FPPITLLYMTS----HSLNPEL 153
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 154 LTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLN--FYL--YSLMTAAVFLTLNSMKVLK--- 226
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 307829182 227 ---LTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMII 282
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIA 410
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
8-267 |
7.66e-20 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 90.08 E-value: 7.66e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 8 IFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDI 86
Cdd:MTH00199 101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 87 ----TQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNpeLLTAMAILSV 162
Cdd:MTH00199 181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSI 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 163 ALGGWMGLNQTQIRKILAFSSISHLGW----MAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVLK--LTTLMTTWTK 236
Cdd:MTH00199 259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338
|
250 260 270
....*....|....*....|....*....|.
gi 307829182 237 SPSLSSIFLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00199 339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
3-267 |
3.29e-16 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 79.52 E-value: 3.29e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 3 PQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAI---------EAATKYFLVQAAASALVLFS 73
Cdd:MTH00198 187 PRSGFALVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFG 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 74 SMTNAWHTGQ--------------WDITQMTHPASSLILTAAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPI 139
Cdd:MTH00198 267 CALYFGFTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVY 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 140 TLLymTSHSLNPELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLY-------SLMT 212
Cdd:MTH00198 347 ILL--TSLVITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALAS 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 307829182 213 AAVFLTL------------------NSMKVLKLTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:MTH00198 425 FTVICTLeefgtrtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
13-282 |
4.24e-16 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 78.65 E-value: 4.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 13 LLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTHP 92
Cdd:COG0651 116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 93 ASSL----------ILTAAISMKLGLVPFHFWFPEVLQG-----SSLTTGLVLSTAV----KFppITLLYMTSHSLNP-E 152
Cdd:COG0651 196 LAELdpglllaafaLLLVGFGIKAALFPLHFWLPDAYPAapspvSALLSGLLTKVGVyailRV--LTLLFGADPALFLgT 273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 153 LLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAI-IVIYNPK-LTLLNFYL--YSLMTAAVFLTLNSMKVLKLT 228
Cdd:COG0651 274 LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLgLAGALFHLlnHALAKALLFLAAGAIERATGT 353
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 307829182 229 TLMTT----WTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMII 282
Cdd:COG0651 354 RDLDKlgglGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVL 411
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
51-263 |
3.62e-12 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 66.95 E-value: 3.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 51 RAIEAATKYFLVQAAASALVL--FSSM--TNAWHTGQWDI------TQMTHPASSLI----LTAAISMKLGLVPFHFWFP 116
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFSWLygLSGGEIELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTP 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 117 EVLQGS-----------SLTTGLVLSTAVkfppITLLYmtsHSLNPE---LLTAMAILSVALGGWMGLNQTQIRKILAFS 182
Cdd:CHL00049 239 DVYEGSptpvvaflsvtSKVAASALATRI----FDIPF---YFSSNEwhlLLEILAILSMILGNLIAITQTSMKRMLAYS 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 183 SISHLGWMAIIVI-------YNPKLTLLNFYLyslmtaavFLTLNSMKVLKLTTLMT----------TWTKSPSLSSIFL 245
Cdd:CHL00049 312 SIGQIGYVIIGIIvgdsndgYASMITYMLFYI--------FMNLGTFACIVLFGLRTgtdnirdyagLYTKDPFLALSLA 383
|
250
....*....|....*...
gi 307829182 246 LTLLSLAGLPPLTGFLPK 263
Cdd:CHL00049 384 LCLLSLGGIPPLAGFFGK 401
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
50-192 |
4.28e-12 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 67.00 E-value: 4.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 50 PRAIEAATKYFLVQAAASALVLF-SSMTNAWHTGQwdiTQMTHPASSLI-------------LTAAISMKLGLVPFHFWF 115
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLSAIALALItspslglalalvfVIAGIAFKISAVPFHQWT 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 116 PEVLQGSSLTTGLVLSTAVKFP----PITLLYMTSHSLNPE---LLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK02504 234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEQwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313
|
....
gi 307829182 189 WMAI 192
Cdd:PRK02504 314 FVMI 317
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-268 |
1.26e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 62.42 E-value: 1.26e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 33 LEINTLAVLPLIS-KSHHPRAIEAATKYFLVQAAASALVLFSSmtnAWHTGQWDITQMTHPASSL-------------IL 98
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYLAVKMsenptvvakialaLF 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 99 TAAISMKLGLVPFHFWFPEVLQG--SSLTTGLVLSTAVKFPPITLLYMTSHSLNPELLTA------MAILSVALGGWMGL 170
Cdd:PRK08376 227 IAGLAMKSGAVPVHMWLPDAYPAapSSISAMLLVIKQAGLYALARVLFSIYGPAINLATVgwviiiLGCLTMFVGVAMAV 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 171 NQTQIRKILAFSSISHLGWM------AIIVIYNPKLT----------LLNFYLYSLMTAAVFLT------------LNSM 222
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyetgtrnLNEL 386
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 307829182 223 KVLKLTTLMTTWTkspslssiFLLTLLSLAGLPPLTGFLPKWLIIE 268
Cdd:PRK08376 387 GGLARTMPKTTIA--------FLIGAAAIVGLPPFNGFASKWLIYE 424
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
49-192 |
3.10e-09 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 58.17 E-value: 3.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 49 HPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQW--DITQMTHPASS--------LILTAAISMKLGLVPFHFWFPEV 118
Cdd:COG1008 156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAAPLPltaqlllfLAFFIAFAVKVPMFPFHTWLPDA 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 119 LQGSSlTTGLVLSTAV----------KFPpITLLYMTSHSLNPeLLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:COG1008 236 HVEAP-TAGSVLLAGVllkmggygllRFA-LPLFPEASAYFAP-LLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312
|
....
gi 307829182 189 WMAI 192
Cdd:COG1008 313 FVLL 316
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-282 |
1.37e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 52.96 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 33 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFS-SMTNAwHTGQWDITQMTH--PASSLILTA------AIS 103
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 104 MKLGLVPFHFWFPEVLQGSSLTTGLVLS-TAVKFP--PITLLYMT-------SHSLNPELLTAMAILSVALGGWMGLNQT 173
Cdd:PRK08375 214 LKAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAvyALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 174 QIRKILAFSSISHLGWMAIIVIYNPKLTLLN--FYL--YSLMTAAVFLTLNSMKVLKLTTLMTTWT----KSPSLSSIFL 245
Cdd:PRK08375 294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTYGTRRLSELSglgrRMPLTAAAFA 373
|
250 260 270
....*....|....*....|....*....|....*..
gi 307829182 246 LTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMII 282
Cdd:PRK08375 374 VASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVL 410
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
50-267 |
2.23e-07 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 52.25 E-value: 2.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 50 PRAIEAATKYFLVQAAASALVLFSSMTNAWHTG------QWDITQMTHPASSLILTA---AISMKLGLVPFHFWFPEVlQ 120
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfdllELLNLPLPFGVQTWLFLAffiAFAVKVPLFPLHTWLPDA-H 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 121 GSSLTTGLVLSTAV--KFPP-------ITLLYMTSHSLNPeLLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMA 191
Cdd:TIGR01972 231 VEAPTAGSVILAGVllKMGTygflrfnLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 192 IIVIYNPKLTLLN--FYLYS--LMTAAVFLTLNSMKVLKLTTLMTT----WTKSPSLSSIFLLTLLSLAGLPPLTGFLPK 263
Cdd:TIGR01972 310 LGIFSFNELGISGavFQMIShgLITAALFLLVGVLYERAHTRDIAKygglANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389
|
....
gi 307829182 264 WLII 267
Cdd:TIGR01972 390 FLIL 393
|
|
| NADH_dehy_S2_C |
pfam06444 |
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ... |
295-340 |
8.55e-07 |
|
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.
Pssm-ID: 461914 [Multi-domain] Cd Length: 51 Bit Score: 45.33 E-value: 8.55e-07
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 307829182 295 RLAYCATITLPPHTTNHMKKWHTNKPVNI-SIAILTTLSIMLLPVSP 340
Cdd:pfam06444 5 RLSYSTTLTLFPNTNNSKMKWRFNSTKNTlLLPTLTTLSILLLPLTP 51
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
2-282 |
2.14e-06 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 49.22 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 2 NPQAKLIFVTSLLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHpRAIEAATKYFLVQAAASALVLFSSMTNAWHT 81
Cdd:PRK08668 96 NDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKT 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 82 GQWDIT-------QMTHPASSLI----LTAAISMKLGLVPFHFWFPE-----------VLQGSSLTTG---LVLSTAVkF 136
Cdd:PRK08668 175 GTFDFAdisqgliNDTSTGFALIvflfLLAFGVAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYV-L 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 137 PPITLLY----MTSHSLNPELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWmaiIVIYNPKLTLLNF------- 205
Cdd:PRK08668 254 PGTKLFSefgtYRGVPLFNYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhv 330
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 206 YLYSLMTAAVFLTLNSMKVLKLTTLMTTW----TKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMI 281
Cdd:PRK08668 331 FNHALFKGLFFLIFAAVIYRTGTTKISEMggliEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFM 410
|
.
gi 307829182 282 I 282
Cdd:PRK08668 411 A 411
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
8-192 |
3.37e-06 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 48.39 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 8 IFVTSLLLgttiTISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSS----------MTN 77
Cdd:PRK06458 116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 78 AWHTGQW-DITQMTHPASSLILTAAISM-------KLGLVPFHFWFPEVLQG-----SSLTTGLVLSTA----VKFPPIT 140
Cdd:PRK06458 192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPDAHSEapspvSALLSGVLLNVAlyavLRYYILI 271
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 307829182 141 LLYMTSHSLNPeLLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK06458 272 DAAIGSDFPGR-LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
50-192 |
5.87e-06 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 47.89 E-value: 5.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 50 PRAIEAATKYFLVQAAASALVLFSSMTNAWH----TGQWDITQ-MTHPASS-------LILTAAISMKLGLVPFHFWFPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADlLNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 118 VLQ-----GSSLTTGLVLSTA----VKFPpITLLYMTSHSLNPeLLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK05846 237 AHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314
|
....
gi 307829182 189 WMAI 192
Cdd:PRK05846 315 FVTL 318
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
48-190 |
1.32e-05 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 46.68 E-value: 1.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 48 HHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTHPASS------------LILTAAISmKLGLVPFHFWF 115
Cdd:COG1009 156 EKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAAAPTilssplltlillLLLLGAFG-KSAQFPLHFWL 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 116 PEVLQG----SSL-------TTGLVLstAVKFPPITllymtshSLNPELLTAMAILSVA---LGGWMGLNQTQIRKILAF 181
Cdd:COG1009 235 PDAMEGptpvSALlhaatmvKAGVYL--LARLSPLF-------ALSPVWLTVVAIIGAItalFAALIALAQTDIKRVLAY 305
|
....*....
gi 307829182 182 SSISHLGWM 190
Cdd:COG1009 306 STVSQLGYM 314
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-272 |
4.16e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 45.11 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 33 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFS-----SMTNAWHTGqwDITQMTHP--------ASSLILT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 100 AAISMKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITL------------LYMTSHSLNPELLTaMAILSVALGGW 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFNNVFMI-LAALAIVFGSV 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 168 MGLNQTQIRKILAFSSISHLGWMAIIVIYNPKLTLLNFYLY----SLMTAAVFLTLNSMK----VLKLTTLMTTWTKSPS 239
Cdd:PRK12662 296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375
|
250 260 270
....*....|....*....|....*....|...
gi 307829182 240 LSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTK 272
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIK 408
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
13-192 |
6.45e-05 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 44.75 E-value: 6.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 13 LLLGTTITISSHHWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQAAA------SALVLFSSMTNAWHTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 87 TQMTHPASSL---ILTAAISM-------KLGLVPFHFWFPEV-LQGSSLTTGLVLSTAVKFPPITLLYMTS-------HS 148
Cdd:PRK08676 191 TELAAHASLLspsVLGASFLFifigflaKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 307829182 149 LNPELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
34-192 |
1.41e-04 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 43.48 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 34 EINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQ--WDITQ--MTHPASSLILTA------AIS 103
Cdd:PRK12561 117 ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALSGDTftFDLAElgAKSYPLALELLLyagfliAFG 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 104 MKLGLVPFHFWFPEVLQGSSLTTGLVLSTavkfppiTLLYMTSHSL---NPELLT--------AMAILSVA---LGGWMG 169
Cdd:PRK12561 197 VKLPIFPLHTWLPDAHGEASAPVSMILAG-------VLLKMGGYALirfNVQMLPdahvyfapALAILGVVniiYGALNA 269
|
170 180
....*....|....*....|...
gi 307829182 170 LNQTQIRKILAFSSISHLGWMAI 192
Cdd:PRK12561 270 FAQDNVKRRLAYSSVSHMGFVLL 292
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
2-282 |
2.61e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 42.50 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 2 NPQAKLIFVTSLLLGTTITISSHhWITAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVqAAASALVLFSS----MTN 77
Cdd:PRK06589 115 SSRFLFFFNLTILIGVLIALSSD-LFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFLPavilIYT 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 78 AWHTGQWDITQMTHPASSLILTAAISMKLG---LVPFHFWFPEVLQG----SSLTTGLVLSTAVKFPPITLLYMTSHSLN 150
Cdd:PRK06589 193 KTGNLDFVSGGLFSKNQSIILLLMFIYGIAktaIFPVHSWLPAAMVAhypvSALLHAVIVVKTGLFCIYKILLYIFGLSY 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 151 PELLTAM-------AILSVALGGWMGLNQTQIRKILAFSSISHLGW--MAIIVIYNPKLTLLNFYL--YSLMTAAVFLTL 219
Cdd:PRK06589 273 LQRIFAEfnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLvsHSFAKICLFYSM 352
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 307829182 220 NSMKVLK----LTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMII 282
Cdd:PRK06589 353 GSIYSLKkedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIV 419
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
96-194 |
2.62e-04 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 42.99 E-value: 2.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 96 LILTAAISmKLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLL------YMTSHSLNPELLTaMAILSVALGGWMG 169
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVLV-LGLATMLLGGWRA 285
|
90 100
....*....|....*....|....*
gi 307829182 170 LNQTQIRKILAFSSISHLGWMAIIV 194
Cdd:PRK12644 286 LRQHDLKLILAYGTVSQLGFLTVLV 310
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
33-271 |
3.51e-04 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 42.25 E-value: 3.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 33 LEINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDIT--QMTHPASSLILTAAISMKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSglATADPEAFALIALGLLVKGGIFV 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 111 FHFWFPEVLQGSSLTTGLVLSTAVKFPPITLLYMTSHSLNP--ELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG 188
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGldLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLG 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 189 WMAIIVIYNPKLTLLnfylYSLMTAAVFLTLNSMKVLKLTTL----MTTWTKSPSLSSIFLLTLLslaglPPLTGFLPKW 264
Cdd:PRK07234 283 FILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNFTELisqmLGIGKWIPLTMASFSIAGF-----PLLAGFVSKV 353
|
....*..
gi 307829182 265 LIIEELT 271
Cdd:PRK07234 354 LTLKNLL 360
|
|
| ND5 |
MTH00207 |
NADH dehydrogenase subunit 5; Provisional |
82-268 |
3.80e-04 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 42.06 E-value: 3.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 82 GQWDITQMTHPASSLILTAAISM----KLGLVPFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLL-----YMTSHSLNPE 152
Cdd:MTH00207 165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLirfypFLSSTYWFNP 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 153 LLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLG-WMAIIVIYNPKLTLLNFYLYSLMTAAVFLTLNSMKVL-----K 226
Cdd:MTH00207 245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGvMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHShhhsqD 324
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 307829182 227 LTTLMTTWTKSPSLSSIFLLTLLSLAGLPPLTGFLPKWLIIE 268
Cdd:MTH00207 325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
55-270 |
3.90e-04 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 42.41 E-value: 3.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 55 AATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTHPASSLILT-----AAISMKLGLVPFHFWFPEVLQG-----SSL 124
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILSLVflllfLGFGIKAGIIPFHKWLPYAHPAspsnvSAL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 125 TTGLVLSTAVkfppITLLYMTSHSLNPELLTAMAIL-----SVALGGWMGLNQTQIRKILAFSSISHLGwmaiIVIYNPK 199
Cdd:PRK08667 243 MSGVMLKVAV----YGLVRFLMDVLSPELWWGVLILlagsiSALLGVIYALKEHDLKGLLAYSSIENIG----IILMGIG 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 200 LTLLnFYLYSLMT-------AAVFLTLNS--MKVLKLTT----LMTTWTKS-----------PSLSSIFLLTLLSLAGLP 255
Cdd:PRK08667 315 LYVI-FGVYGLDTlallalgGALFHSLNHalFKSLLFLTagsvVHATGTRNiekmgglvklmPYTSALFLVGAVSIAALP 393
|
250
....*....|....*
gi 307829182 256 PLTGFLPKWLIIEEL 270
Cdd:PRK08667 394 PFNGFASELLLYESF 408
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
95-267 |
5.07e-04 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 41.86 E-value: 5.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 95 SLILTAAISMKLGLVPFhFWFPevlqGSSLTTGLVLSTA-----------VKFPPITLLYMTSHSLNPELLTAMAILSVA 163
Cdd:PRK12663 210 ALLFLLAFGMKAALFPF-MWLP----AAYHTPNTEVAALfaalltkvgiyALIRVFTLLFPQERELLHPLLATMAAITMV 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 164 LGGWMGLNQTQIRKILAFSSISHLGWM-AIIVIYNPK-LTLLNFYLYSLMT--AAVFLTLNSMKVL----KLTTLMTTWT 235
Cdd:PRK12663 285 IGALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGLYR 364
|
170 180 190
....*....|....*....|....*....|..
gi 307829182 236 KSPSLSSIFLLTLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12663 365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLV 396
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
101-195 |
1.70e-03 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 40.29 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 101 AISMKLGLVPFHFWFPEV-----LQGSSLTTGLVLSTA------VKFPpitLLYMTSHSLNPELLtAMAILSVALGGWMG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314
|
90 100
....*....|....*....|....*.
gi 307829182 170 LNQTQIRKILAFSSISHLGWMAIIVI 195
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
55-190 |
2.19e-03 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 39.68 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 55 AATKYFLVQAAASALVLFSSMTNAWHTGQWDI---TQMTHP---ASSLILTAAISMKLG----LVPFHFWFPEV-LQGSS 123
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGASSFdyePLRSHTlplSTQLLLLAPILVGFGikipLVPFHTWLPDAhVEAST 237
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 307829182 124 LTTGLVLSTAVKFPPITLL------YMTSHSLNPELLTAMAILSVALGGWMGLNQTQIRKILAFSSISHLGWM 190
Cdd:PRK06473 238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
34-281 |
7.25e-03 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 38.09 E-value: 7.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 34 EINTLAVLPLISKSHHPRAIEAATKYFLVQAAASALVLFSSMTNAWHTGQWDITQMTH-----PASSLILTAAISMKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDIHNallvnPTSPVIYGGLLLLIFGL 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 109 V------PFHFWFPEVLQGSSLTTGLVLSTAVKFPPITLL-------YMTSHSLNPE-LLTAMAILSVALGGWMGLNQTQ 174
Cdd:PRK06277 210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMlvifklfGGLSYFPSAQgVLIALSVLAMVFGVVMALLQTD 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307829182 175 IRKILAFSSISHLGWMAIIVIYNPKLTL-------LNFYLYslmTAAVFL----TLNSMKVLKLTTLMTTWTKSPSLSSI 243
Cdd:PRK06277 290 YKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIY---KSALFLgagiVSYRTKTSNLRKLGGLLPVMPVVAFM 366
|
250 260 270
....*....|....*....|....*....|....*...
gi 307829182 244 FLLTLLSLAGLPPLTGFLPKWLIIEELTKQGMAPAAMI 281
Cdd:PRK06277 367 VLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAII 404
|
|
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