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Conserved domains on  [gi|307645697|gb|ADN83665|]
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ribosomal protein S5, partial [Salassa sp. NW-2010]

Protein Classification

40S ribosomal protein S5( domain architecture ID 10201903)

40S ribosomal protein S5

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 19-199 4.18e-97

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


:

Pssm-ID: 271246  Cd Length: 185  Bit Score: 279.44  E-value: 4.18e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  19 KLFGRWSCYDVQVSDMSLQDYISVKekYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMM******************* 98
Cdd:cd14867    1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  99 *************VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 178
Cdd:cd14867   79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                        170       180
                 ....*....|....*....|.
gi 307645697 179 INAAKGSSNSYAIKKKDELER 199
Cdd:cd14867  159 INAAKGSSNSYAIKKKDELER 179
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 19-199 4.18e-97

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 279.44  E-value: 4.18e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  19 KLFGRWSCYDVQVSDMSLQDYISVKekYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMM******************* 98
Cdd:cd14867    1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  99 *************VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 178
Cdd:cd14867   79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                        170       180
                 ....*....|....*....|.
gi 307645697 179 INAAKGSSNSYAIKKKDELER 199
Cdd:cd14867  159 INAAKGSSNSYAIKKKDELER 179
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 17-199 7.18e-89

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 258.93  E-value: 7.18e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  17 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMM***************** 96
Cdd:PTZ00091   5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  97 ***************VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 176
Cdd:PTZ00091  85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                        170       180
                 ....*....|....*....|...
gi 307645697 177 ELINAAKGSSNSYAIKKKDELER 199
Cdd:PTZ00091 165 EIINASKESSNSYAIKKKDEVER 187
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 17-199 4.23e-79

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 233.89  E-value: 4.23e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697   17 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYakyLPHSAGRYAHKRFRKAQCPIVERLTNSLMM***************** 96
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPIY---VPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697   97 ***************VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 176
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|...
gi 307645697  177 ELINAAKGSSNSYAIKKKDELER 199
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELER 180
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 112-199 1.06e-31

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 111.70  E-value: 1.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  112 VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAReaaFRNIKTIAECVADELINAAKGSsnSYAI 191
Cdd:pfam00177  44 VFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAV 118


                  ....*...
gi 307645697  192 KKKDELER 199
Cdd:pfam00177 119 KKKEETHR 126
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 140-199 4.10e-05

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 41.97  E-value: 4.10e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 307645697 140 VDVSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:COG0049   89 VEVRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHK 143
 
Name Accession Description Interval E-value
uS7_Eukaryote cd14867
Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 19-199 4.18e-97

Eukaryota homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Eukaryotic RPS7 (also named RPS5) have variable N-terminal regions that affect the efficiency of initiation translation process by impacting small ribosomal subunit to function. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271246  Cd Length: 185  Bit Score: 279.44  E-value: 4.18e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  19 KLFGRWSCYDVQVSDMSLQDYISVKekYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMM******************* 98
Cdd:cd14867    1 KLFGKWSYDDVEVKDPSLKDYINLK--YPVYVPHTAGRYQKKRFRKAQCPIVERLINSLMMHGRNTGKKLMAYRIVKHAF 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  99 *************VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADEL 178
Cdd:cd14867   79 EIIHLLTGKNPIQVLVDAIENSGPREDTTRIGYGGTVRRQAVDVSPLRRVNQALRLIATGAREAAFRNIKSIAECLADEL 158

                        170       180
                 ....*....|....*....|.
gi 307645697 179 INAAKGSSNSYAIKKKDELER 199
Cdd:cd14867  159 INAAKGSSNSYAIKKKDELER 179
PTZ00091 PTZ00091
40S ribosomal protein S5; Provisional
 17-199 7.18e-89

40S ribosomal protein S5; Provisional


Pssm-ID: 185439  Cd Length: 193  Bit Score: 258.93  E-value: 7.18e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  17 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMM***************** 96
Cdd:PTZ00091   5 EPKLFGKWSYDDVQVSDLSLKDYIAVTTKASVFVPHTAGRYQKKRFRKAQCPIVERLVNSLMFHGRNNGKKLLAVRIVKH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  97 ***************VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 176
Cdd:PTZ00091  85 AFEIIHLLTDKNPLQVLVDAVQNGGPREDSTRVGSGGVVRRQAVDVSPLRRVNQAIYLICKGAREAAFRNIKTIAECLAD 164

                        170       180
                 ....*....|....*....|...
gi 307645697 177 ELINAAKGSSNSYAIKKKDELER 199
Cdd:PTZ00091 165 EIINASKESSNSYAIKKKDEVER 187
uS7_euk_arch TIGR01028
ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the ...
 17-199 4.23e-79

ribosomal protein uS7, eukaryotic/archaeal; This model describes the members from the eukaryotic cytosol and the Archaea of the family that includes ribosomal protein uS7 (previously S5 in yeast and human). A separate model describes bacterial and organellar S7. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 273402  Cd Length: 186  Bit Score: 233.89  E-value: 4.23e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697   17 EIKLFGRWSCYDVQVSDMSLQDYISVKEKYakyLPHSAGRYAHKRFRKAQCPIVERLTNSLMM***************** 96
Cdd:TIGR01028   1 EIKVFGKWSTEEVEVKDPSLKDYINLEPIY---VPHTAGRHAKKQFRKAKVPIVERLINKVMRSGRNNGKKLKAYRIVKE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697   97 ***************VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVAD 176
Cdd:TIGR01028  78 AFEIIEKRTKKNPIQVLVDAIENAGPREDTTRVGYGGIAYRQAVDISPLRRVDQALRNIALGAREAAFRNKKSIAECLAE 157

                         170       180
                  ....*....|....*....|...
gi 307645697  177 ELINAAKGSSNSYAIKKKDELER 199
Cdd:TIGR01028 158 EIILAANGDSKSYAIKKKEELER 180
PRK04027 PRK04027
30S ribosomal protein S7P; Reviewed
 13-199 5.34e-63

30S ribosomal protein S7P; Reviewed


Pssm-ID: 235204  Cd Length: 195  Bit Score: 193.58  E-value: 5.34e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  13 ADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYakyLPHSAGRYAHKRFRKAQCPIVERLTNSLMM************* 92
Cdd:PRK04027   6 AEPMEIKLFGKWDVEEVEVRDPSLKRYINLTPVL---VPHTGGRHAKKQFGKAEVPIVERLINKLMRTERNTGKKQKAYN 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  93 *******************VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAE 172
Cdd:PRK04027  83 IVKEAFEIIEKRTKQNPIQVLVDAIENAAPREETTRIKYGGISYPKAVDVSPQRRVDLALRFIAEGARQASFKNKKSIEE 162

                        170       180
                 ....*....|....*....|....*..
gi 307645697 173 CVADELINAAKGSSNSYAIKKKDELER 199
Cdd:PRK04027 163 ALAEEIIAAANNDPKSYAVRKKEEIER 189
Ribosomal_S7 pfam00177
Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 ...
 112-199 1.06e-31

Ribosomal protein S7p/S5e; This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.


Pssm-ID: 425505  Cd Length: 132  Bit Score: 111.70  E-value: 1.06e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307645697  112 VLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAReaaFRNIKTIAECVADELINAAKGSsnSYAI 191
Cdd:pfam00177  44 VFVKALENVKPRVEVKSRRVGGATYQVPVEVRPERRVALALRWIIEAAR---KRSEKSMAERLANELIDAANGR--GAAV 118


                  ....*...
gi 307645697  192 KKKDELER 199
Cdd:pfam00177 119 KKKEETHR 126
uS7_Bacteria cd14869
Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an ...
 126-199 2.67e-07

Bacterial homolog of Ribosomal Protein S7; uS7, also known as Ribosomal protein (RP)S7, is an important part of the translation process which is universally present in the small subunit of prokaryotic and eukaryotic ribosomes. Prokaryotic RPS7 is lacking the variable N-terminal region of eukaryotic RPS7. The ribosome small subunit is one of the two subunits of ribosome organelles that use mRNA as a template for protein synthesis in a process called translation. The small subunits of bacteria and eukaryotes have the same shape of head, body, platform, beak, and shoulder. RPS7 is located at the head of the small subunit which is a primary ribosomal RNA (rRNA) binding protein that assists in rRNA folding and the binding of other proteins during small subunit assembly in all species. RPS7 is also involved in the formation of the mRNA exit channel at the interface of the large and small subunits. Some ribosomal proteins have extra ribosomal functions in cell differentiation and apoptosis.


Pssm-ID: 271248  Cd Length: 138  Bit Score: 47.83  E-value: 2.67e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 307645697 126 STRIGraGTVRRQAVDVSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:cd14869   66 SRRVG--GATYQVPVEVRPERRQSLALrWII-EAARK---RKEKSMAEKLAAELLDAANNTGA--AVKKKEDTHK 132
PRK05302 PRK05302
30S ribosomal protein S7; Validated
 140-199 1.91e-05

30S ribosomal protein S7; Validated


Pssm-ID: 235398  Cd Length: 156  Bit Score: 42.78  E-value: 1.91e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 307645697 140 VDVSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:PRK05302  89 VEVRPERRQALAMrWLV-EAARK---RGEKTMAERLANELLDAANNRGA--AVKKREDTHR 143
RpsG COG0049
Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 ...
 140-199 4.10e-05

Ribosomal protein S7 [Translation, ribosomal structure and biogenesis]; Ribosomal protein S7 is part of the Pathway/BioSystem: Ribosome 30S subunit


Pssm-ID: 439819  Cd Length: 156  Bit Score: 41.97  E-value: 4.10e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 307645697 140 VDVSPLRRVNQAI-WLLcTGAREaafRNIKTIAECVADELINAAKGSSNsyAIKKKDELER 199
Cdd:COG0049   89 VEVRPERRQALAMrWII-DAARK---RKEKTMAERLANELLDASNNRGA--AVKKREDTHK 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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