|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-144 |
4.71e-102 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 295.92 E-value: 4.71e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-144 |
3.66e-47 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 156.49 E-value: 3.66e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFH-FVLPFIVAAMVMIHLLFLHQTGSNNPLG----LNSN 75
Cdd:COG1290 151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEK 230
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 307601211 76 IDKIPFHPYFSFKDIFGFIIMITSLTLLTLLEPymLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:COG1290 231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-114 |
2.76e-28 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 101.93 E-value: 2.76e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHF-VLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKI 79
Cdd:pfam13631 55 GTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGV 134
|
90 100 110
....*....|....*....|....*....|....*
gi 307601211 80 PFHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDP 114
Cdd:pfam13631 135 PFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-67 |
6.58e-27 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 99.36 E-value: 6.58e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSN 67
Cdd:cd00284 134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CYTB |
MTH00156 |
cytochrome b; Provisional |
1-144 |
4.71e-102 |
|
cytochrome b; Provisional
Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 295.92 E-value: 4.71e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00156 130 FWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 209
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00156 210 FHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRS 273
|
|
| CYTB |
MTH00119 |
cytochrome b; Provisional |
1-144 |
2.26e-90 |
|
cytochrome b; Provisional
Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 267.15 E-value: 2.26e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00119 141 FWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00119 221 FHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRS 284
|
|
| CYTB |
MTH00131 |
cytochrome b; Provisional |
1-144 |
2.45e-90 |
|
cytochrome b; Provisional
Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 266.90 E-value: 2.45e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00131 140 FWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKIS 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00131 220 FHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRS 283
|
|
| CYTB |
MTH00191 |
cytochrome b; Provisional |
1-144 |
1.67e-89 |
|
cytochrome b; Provisional
Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 264.47 E-value: 1.67e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00191 137 FWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIP 216
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00191 217 FHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRS 280
|
|
| CYTB |
MTH00074 |
cytochrome b; Provisional |
1-144 |
7.99e-89 |
|
cytochrome b; Provisional
Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 263.08 E-value: 7.99e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00074 141 FWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00074 221 FHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRS 284
|
|
| CYTB |
MTH00100 |
cytochrome b; Provisional |
1-144 |
3.16e-87 |
|
cytochrome b; Provisional
Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 259.19 E-value: 3.16e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00100 140 FWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIP 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00100 220 FHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRS 283
|
|
| CYTB |
MTH00145 |
cytochrome b; Provisional |
1-144 |
1.56e-86 |
|
cytochrome b; Provisional
Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 257.14 E-value: 1.56e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00145 141 FWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00145 221 FHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRS 284
|
|
| CYTB |
MTH00016 |
cytochrome b; Validated |
1-144 |
5.26e-84 |
|
cytochrome b; Validated
Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 250.75 E-value: 5.26e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00016 141 FWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00016 221 FHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRS 284
|
|
| CYTB |
MTH00034 |
cytochrome b; Validated |
1-144 |
1.35e-79 |
|
cytochrome b; Validated
Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 239.61 E-value: 1.35e-79
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00034 140 FWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVP 219
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00034 220 FHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRS 283
|
|
| CYTB |
MTH00022 |
cytochrome b; Validated |
1-144 |
1.02e-68 |
|
cytochrome b; Validated
Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 211.87 E-value: 1.02e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00022 139 FWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVS 218
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00022 219 FHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRS 282
|
|
| CYTB |
MTH00224 |
cytochrome b; Provisional |
1-144 |
1.93e-67 |
|
cytochrome b; Provisional
Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 208.62 E-value: 1.93e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00224 141 FWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00224 221 FHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRS 284
|
|
| CYTB |
MTH00053 |
cytochrome b; Provisional |
1-144 |
3.00e-66 |
|
cytochrome b; Provisional
Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 205.71 E-value: 3.00e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00053 141 FWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIP 220
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00053 221 FHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRS 284
|
|
| CYTB |
MTH00086 |
cytochrome b; Provisional |
1-144 |
6.79e-53 |
|
cytochrome b; Provisional
Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 170.51 E-value: 6.79e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00086 129 FWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKIC 208
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 307601211 81 FHPYFSFKDIFGfIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00086 209 FGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRA 271
|
|
| CYTB |
MTH00033 |
cytochrome b; Provisional |
1-144 |
6.84e-50 |
|
cytochrome b; Provisional
Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 163.57 E-value: 6.84e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKIP 80
Cdd:MTH00033 137 FWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTA 216
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 307601211 81 FHPYFSFKDIFGFIIMItSLTLLTLLEPY---MLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00033 217 FHVYFTIKDILGFLILF-GVFVIIGIEPRietLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRS 282
|
|
| QcrB/PetB |
COG1290 |
Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-144 |
3.66e-47 |
|
Cytochrome b subunit of the bc complex [Energy production and conversion];
Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 156.49 E-value: 3.66e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFH-FVLPFIVAAMVMIHLLFLHQTGSNNPLG----LNSN 75
Cdd:COG1290 151 YWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEK 230
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 307601211 76 IDKIPFHPYFSFKDIFGFIIMITSLTLLTLLEPymLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:COG1290 231 VDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFP--INPPPNYGPANPLATPAHIQPDWYFLPFYGILRA 297
|
|
| CYTB |
MTH00046 |
cytochrome b; Validated |
1-144 |
1.66e-37 |
|
cytochrome b; Validated
Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 130.49 E-value: 1.66e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNI-DKI 79
Cdd:MTH00046 131 YWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVV 210
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 307601211 80 PFHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:MTH00046 211 YFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRS 275
|
|
| Cytochrom_B_N_2 |
pfam13631 |
Cytochrome b(N-terminal)/b6/petB; |
1-114 |
2.76e-28 |
|
Cytochrome b(N-terminal)/b6/petB;
Pssm-ID: 433364 Cd Length: 169 Bit Score: 101.93 E-value: 2.76e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHF-VLPFIVAAMVMIHLLFLHQTGSNNPLGLNSNIDKI 79
Cdd:pfam13631 55 GTGLRIGLGILSSIPVVGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGV 134
|
90 100 110
....*....|....*....|....*....|....*
gi 307601211 80 PFHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDP 114
Cdd:pfam13631 135 PFWPVFAVKMLLFFLITVALLIGLAQINPIWLGGP 169
|
|
| Cytochrome_b_N |
cd00284 |
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-67 |
6.58e-27 |
|
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.
Pssm-ID: 238176 Cd Length: 200 Bit Score: 99.36 E-value: 6.58e-27
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTGSN 67
Cdd:cd00284 134 YWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
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|
| cytochrome_b_C |
cd00290 |
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
68-144 |
2.13e-25 |
|
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.
Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 93.86 E-value: 2.13e-25
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 307601211 68 NPLGLNSNIDKIPFHPYFSFKDIFGFIIMITSLTLLTLLEPYMLGDPDNFIPANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:cd00290 1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRA 77
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|
| Cytochrome_B |
pfam00033 |
Cytochrome b/b6/petB; |
1-65 |
1.83e-24 |
|
Cytochrome b/b6/petB;
Pssm-ID: 306530 Cd Length: 189 Bit Score: 92.83 E-value: 1.83e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFHFVLPFIVAAMVMIHLLFLHQTG 65
Cdd:pfam00033 125 YWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
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|
| Cytochrom_B_C |
pfam00032 |
Cytochrome b(C-terminal)/b6/petD; |
119-144 |
6.93e-12 |
|
Cytochrome b(C-terminal)/b6/petD;
Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 57.87 E-value: 6.93e-12
10 20
....*....|....*....|....*.
gi 307601211 119 PANPLVTPVHIQPEWYFLFAYAILRS 144
Cdd:pfam00032 1 PANPLVTPAHIVPEWYFLPFYAILRS 26
|
|
| petB |
CHL00070 |
cytochrome b6 |
1-70 |
2.28e-10 |
|
cytochrome b6
Pssm-ID: 177009 Cd Length: 215 Bit Score: 56.27 E-value: 2.28e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFH-FVLPFIVAAMVMIHLLFLHQTGSNNPL 70
Cdd:CHL00070 145 YWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
|
|
| PRK03735 |
PRK03735 |
cytochrome b6; Provisional |
1-70 |
1.66e-08 |
|
cytochrome b6; Provisional
Pssm-ID: 179639 Cd Length: 223 Bit Score: 51.25 E-value: 1.66e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 307601211 1 FWGATVITNLLSAIPYLGTELVQWVWGGFAVDNATLTRFFTFH-FVLPFIVAAMVMIHLLFLHQTGSNNPL 70
Cdd:PRK03735 153 YFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
|
|
| petD |
CHL00058 |
cytochrome b6/f complex subunit IV |
107-143 |
9.04e-05 |
|
cytochrome b6/f complex subunit IV
Pssm-ID: 176998 Cd Length: 160 Bit Score: 39.98 E-value: 9.04e-05
10 20 30
....*....|....*....|....*....|....*..
gi 307601211 107 EPYMLGDPdnfipANPLVTPVHIQPEWYFLFAYAILR 143
Cdd:CHL00058 58 EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILR 89
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