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Conserved domains on  [gi|306960156|ref|YP_003875570|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Physemacris variolosa]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009596)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 2.23e-36

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 119.88  E-value: 2.23e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156   3 MMVPSFLISIIIPTVIIMISTNLSKKMIHDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 306960156  83 SSNLTIWLMSSSIFIFILLSGLYHEWNQGALKW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 2.23e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 119.88  E-value: 2.23e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156   3 MMVPSFLISIIIPTVIIMISTNLSKKMIHDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 306960156  83 SSNLTIWLMSSSIFIFILLSGLYHEWNQGALKW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 3.24e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.95  E-value: 3.24e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156   32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKsSNLTIWLMSSSIFIFILLSGLYHEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 306960156  112 ALK 114
Cdd:pfam00507  92 ALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 31-115 4.18e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.63  E-value: 4.18e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  31 HDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIwLMSSSIFIFILLSGLYHEWNQ 110
Cdd:COG0838   34 PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFG-LIEMLVFIAILLVGLIYAWKK 112


                 ....*
gi 306960156 111 GALKW 115
Cdd:COG0838  113 GALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 2.23e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 119.88  E-value: 2.23e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156   3 MMVPSFLISIIIPTVIIMISTNLSKKMIHDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 306960156  83 SSNLTIWLMSSSIFIFILLSGLYHEWNQGALKW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 2.63e-35

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 117.27  E-value: 2.63e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156   1 MLMMVPSFLISIIIPTVIIMISTNLSKKMIHDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 306960156  81 MKSSNLTIWLMSSSIFIFILLSGLYHEWNQGALKWA 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 1.44e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 107.77  E-value: 1.44e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156   1 MLMMVPSFLISIIIPTVIIMISTNLSKKMIHDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLII 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 306960156  81 MKSSNLTIWLMSSSIFIFILLSGLYHEWNQGALKWA 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-117 7.23e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 98.39  E-value: 7.23e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156   1 MLMMVPSFLISIIIPTVIIMISTNLSKKMIHDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLII 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 306960156  81 MKSSNLTIWLMSSSIFIFILLSGLYHEWNQGALKWAA 117
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWSS 117
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 34-116 1.07e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 95.39  E-value: 1.07e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  34 EKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIWLMSSSIFIFILLSGLYHEWNQGAL 113
Cdd:MTH00106  32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                 ...
gi 306960156 114 KWA 116
Cdd:MTH00106 112 EWT 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 32-116 1.60e-25

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 92.35  E-value: 1.60e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIWLMSSSIFIFILLSGLYHEWNQG 111
Cdd:MTH00042  31 DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPSTLLPISLIFLIILTIGLVYEWVNG 110


                 ....*
gi 306960156 112 ALKWA 116
Cdd:MTH00042 111 GLEWA 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
32-114 3.24e-25

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 90.95  E-value: 3.24e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156   32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKsSNLTIWLMSSSIFIFILLSGLYHEWNQG 111
Cdd:pfam00507  13 NPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFR-ELGWFGFVEMLIFIAILLVGLVYAWKKG 91


                  ...
gi 306960156  112 ALK 114
Cdd:pfam00507  92 ALE 94
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 32-116 5.18e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 88.40  E-value: 5.18e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIWLMSSSIFIFILLSGLYHEWNQG 111
Cdd:MTH00113  30 DNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATIILTLLTLGLIYEWLQG 109


                 ....*
gi 306960156 112 ALKWA 116
Cdd:MTH00113 110 GLEWA 114
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 29-116 6.03e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 85.74  E-value: 6.03e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  29 MIHDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIWLMSSSIFIFILLSGLYHEW 108
Cdd:MTH00136  28 MTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLPSPLLTFFWATAVLILLTLGLIYEW 107


                 ....*...
gi 306960156 109 NQGALKWA 116
Cdd:MTH00136 108 LQGGLEWA 115
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 32-116 8.29e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 85.43  E-value: 8.29e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPT---LIIMKSSNLTIWlmssSIFIFILLS-GLYHE 107
Cdd:MTH00069  29 DSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNTPTNTLFW----STLILILLTlGLIYE 104


                 ....*....
gi 306960156 108 WNQGALKWA 116
Cdd:MTH00069 105 WIQGGLEWA 113
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 28-115 3.03e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 83.79  E-value: 3.03e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  28 KMIHDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIWLMssSIFIFILLSGLYHE 107
Cdd:MTH00203  27 KVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLLLA--FLFLILLTLGLIYE 104


                 ....*...
gi 306960156 108 WNQGALKW 115
Cdd:MTH00203 105 WLQGGLEW 112
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 31-115 4.18e-22

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 83.63  E-value: 4.18e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  31 HDREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIwLMSSSIFIFILLSGLYHEWNQ 110
Cdd:COG0838   34 PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFG-LIEMLVFIAILLVGLIYAWKK 112


                 ....*
gi 306960156 111 GALKW 115
Cdd:COG0838  113 GALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 32-116 5.76e-20

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 78.37  E-value: 5.76e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILP-TLIIMKSSNLTIWLMssSIFIFILLSGLYHEWNQ 110
Cdd:PRK06602  38 DREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwAVSFREIGWLGFVEA--MIFILVLLVGLVYLWRK 115


                 ....*.
gi 306960156 111 GALKWA 116
Cdd:PRK06602 116 GALDWE 121
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 5.25e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 70.51  E-value: 5.25e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNL-TIWLMssSIFIFILLSGLYHEWNQ 110
Cdd:MTH00055  35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLfGFWVM--YLFLIILTIGLIYEWVK 112


                 ....*
gi 306960156 111 GALKW 115
Cdd:MTH00055 113 GGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 32-115 1.84e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 69.32  E-value: 1.84e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKS-SNLTIWLMssSIFIFILLSGLYHEWNQ 110
Cdd:MTH00018  30 DREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQiAPFGFWTM--VGFLFILTLGLIYEWIK 107


                 ....*
gi 306960156 111 GALKW 115
Cdd:MTH00018 108 GGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 1.10e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 64.95  E-value: 1.10e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNL-TIWLMSSsiFIFILLSGLYHEWNQ 110
Cdd:MTH00030  40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLfSFWIVYT--FLIVLAIGLAYEWIK 117


                 ....*
gi 306960156 111 GALKW 115
Cdd:MTH00030 118 GGLEW 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 34-115 1.04e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 54.61  E-value: 1.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  34 EKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIWLmSSSIFIFILLSGLYHEWNQGAL 113
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFI-EALIFVLILIVGLVYAWRKGAL 117


                 ..
gi 306960156 114 KW 115
Cdd:CHL00022 118 EW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
22-115 3.91e-09

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 50.44  E-value: 3.91e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  22 STNLSKKMI-HDRE--KSSPFECGFDP-KSPSRMpfSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLtIWLMSSSIFI 97
Cdd:PRK08489  31 ARFISRKLAqKNTEklKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVDFKLLGL-FGLIEMLLFI 107

                         90
                 ....*....|....*...
gi 306960156  98 FILLSGLYHEWNQGALKW 115
Cdd:PRK08489 108 VLLTIGFIYAWKKGALEW 125
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 4.78e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 47.82  E-value: 4.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIwLMSSSIFIFILLSGLYHEWNQG 111
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFA-LIEMLIFVVMLLVGLAYAWKKK 117


                 ....
gi 306960156 112 ALKW 115
Cdd:PRK07756 118 VLQW 121
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 35-115 1.91e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.65  E-value: 1.91e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  35 KSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLTIWLmsssIFIFILLsGLYHEWNQGALK 114
Cdd:MTH00092  34 KVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVSDFSSLISFFM----LMIFIFF-GFYMEWWYGKLI 108


                 .
gi 306960156 115 W 115
Cdd:MTH00092 109 W 109
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 32-115 3.98e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 39.65  E-value: 3.98e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPK----SPSRMPfsLQFFMIAVVFLVFDVEIAMILPTLIIMKSsnLTIW-LMSSSIFIFILLSGLYH 106
Cdd:PRK07928  34 NRAKLEAYECGIEPTpqpaGGGRFP--VKYYLTAMLFIVFDIEIVFLYPWAVSFDA--LGVFgLVEMALFMLTVFVAYAY 109


                 ....*....
gi 306960156 107 EWNQGALKW 115
Cdd:PRK07928 110 VWRRGGLEW 118
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 32-115 4.93e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 37.10  E-value: 4.93e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMILPTLIIMKSSNLtIWLMSSSIFIFILLSGLYHEWNQG 111
Cdd:PRK06432  60 DQSYLEPYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGL-IPFIETLIFLAMPLFAVYYAFKMG 138


                 ....
gi 306960156 112 ALKW 115
Cdd:PRK06432 139 YMRW 142
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 32-115 2.58e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 34.87  E-value: 2.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960156  32 DREKSSPFECGFDPKSPSRMPFSLQFFMIAVVFLVFDVEIAMIL--PTLIIMkSSNLTIWLmsssIFIFILLSGLYHEWN 109
Cdd:MTH00060  34 GFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLnmPFQGLL-FYNFWYYY----FFLLLLFLGFVVELF 108


                 ....*.
gi 306960156 110 QGALKW 115
Cdd:MTH00060 109 SGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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