|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
7.22e-67 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 213.15 E-value: 7.22e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 1 MLMNPSKVIFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMN-F 79
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNmL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 80 NTLFFPSTHMKFILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGaLIYIFFLSSIMIGAI 159
Cdd:MTH00160 81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 160 GGMNQTSLRKILAFSSINHLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNFYFLNQLYSE-NKDIMTNINLAMS 238
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 239 FLSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIFTLSSMETKWKLNPAKSQSPQLPFLLI 318
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLS 319
|
330
....*....|....*.
gi 306960091 319 TLNISGLALSSLFILF 334
Cdd:MTH00160 320 FISLFGLILSSLLFLL 335
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
27-207 |
3.79e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 85.83 E-value: 3.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 27 WWTAWMGLEINLLSFIPLI-SNSKNPIVTEASIKYFLIQSIASSTLLFFVIM--------NFNTLFFPSTHMK------- 90
Cdd:pfam00361 4 LLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtlSFDELSKALTGGLnssglll 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 91 ---FILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILL-TWQKLAPSILAT----YCAYLGALIYIFFLSSIM---IGAI 159
Cdd:pfam00361 84 lflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRrsllYLPSSPFIQQILLILAIIsmlLGSL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 306960091 160 GGMNQTSLRKILAFSSINHLGWMIMALSIEN----SLWIFYFITYSIINFMI 207
Cdd:pfam00361 164 AALVQTDIKRLLAYSSISHMGYMLIALGAGTiygiQAAIFHLLTHGLFSAGL 215
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
32-292 |
1.42e-11 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 65.14 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 32 MGLEINLLSFIPLIS-NSKNPIVTEASIKYFLIQSIASSTLLF---FVI-----MNFNTLFFPSTHMK-----------F 91
Cdd:COG1007 129 LGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisLLYgatgsLNLAGIAAALAAGGanspllllglvL 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 92 ILLTLFLKMGAAPLHFWFPEVndkldWENS----------------FILLTwqKLAPSILATYCAYLGALIYIFFLSSIM 155
Cdd:COG1007 209 VLAGLAFKLSAVPFHMWTPDV-----YEGAptpvtaflatapkiaaFAALL--RLLVEAFPGLAADWQLLLAVLAVLSMT 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 156 IGAIGGMNQTSLRKILAFSSINHLGWMIMALSIENSLWI----FYFITYSIIN---FMIIFTMKSNNFYF-----LNQLY 223
Cdd:COG1007 282 VGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNlgaFAVILLLSRKGGEAeeiedLAGLA 361
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 306960091 224 SENKD---IMTNINLAMS-------FlslgglppllgfLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF 292
Cdd:COG1007 362 RRSPLlalAMTIFLLSLAgipptagF------------FGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMY 428
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
29-292 |
3.26e-08 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 54.57 E-value: 3.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 29 TAWMGLEINLLSFIPLISNSKNPIV-TEASIKYFLIQSIASSTLLFFV--------IMNFNTLF-FPSTHMK-------- 90
Cdd:TIGR01770 126 SIYLGLELQSLCFYVLAGLKRKSRFsTEAGLKYFILGAFSSGLLLFGIsliygftgSLNFEDLLlFLSNGMLnisllllg 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 91 --FILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLA---------PSILATYCAYLGALIYIFFLSSIMIGAI 159
Cdd:TIGR01770 206 ivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGFSEAWQIFLAIIAFLSMLIGNF 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 160 GGMNQTSLRKILAFSSINHLGWMIMALSIENSLWI----FYFITYSIINFMI--IFTMKSNNFYFLNQLYSENKDIM-TN 232
Cdd:TIGR01770 286 GALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAfgVLSLLRSYKDEWIEYISDFAGLFkTN 365
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 306960091 233 INLAMSFLSLGGLPP----LLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF 292
Cdd:TIGR01770 366 PILAILILIFMFSLAgippLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMY 429
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| ND2 |
MTH00160 |
NADH dehydrogenase subunit 2; Provisional |
1-334 |
7.22e-67 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214442 [Multi-domain] Cd Length: 335 Bit Score: 213.15 E-value: 7.22e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 1 MLMNPSKVIFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMN-F 79
Cdd:MTH00160 1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNmL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 80 NTLFFPSTHMKFILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGaLIYIFFLSSIMIGAI 159
Cdd:MTH00160 81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNN-FIIIIIILSAIIGAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 160 GGMNQTSLRKILAFSSINHLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNFYFLNQLYSE-NKDIMTNINLAMS 238
Cdd:MTH00160 160 GGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSnNKSKKIKFLLFLN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 239 FLSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIFTLSSMETKWKLNPAKSQSPQLPFLLI 318
Cdd:MTH00160 240 LLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILNFLS 319
|
330
....*....|....*.
gi 306960091 319 TLNISGLALSSLFILF 334
Cdd:MTH00160 320 FISLFGLILSSLLFLL 335
|
|
| ND2 |
MTH00112 |
NADH dehydrogenase subunit 2; Provisional |
3-335 |
6.63e-53 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214423 [Multi-domain] Cd Length: 346 Bit Score: 177.32 E-value: 6.63e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 3 MNP-SKVIFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMNFN- 80
Cdd:MTH00112 1 MNPhAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWn 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 81 ------TLFFPSTHMKFILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSIL--ATYCAYLGALIYIFFLS 152
Cdd:MTH00112 81 tgqwdiTQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLllMTSNSLNPTLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 153 SIMIGAIGGMNQTSLRKILAFSSINHLGWMIMALSIENSLWIFYFITYSIIN---FMIIFTMKSNNFYFLnqLYSENKDI 229
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTtpmFLTLNTTSTKTLKDM--MTSWTKSP 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 230 MTNINLAMSFLSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMF-SIFTL----SSMETKWKLN 304
Cdd:MTH00112 239 TLNTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYiSTITLppntTNMMMKWRTK 318
|
330 340 350
....*....|....*....|....*....|.
gi 306960091 305 PAKSqspQLPFLLITLNISGLALSSLFILFT 335
Cdd:MTH00112 319 PKKN---TLTATLTTLSTLLLPLSPMILTII 346
|
|
| ND2 |
MTH00135 |
NADH dehydrogenase subunit 2; Provisional |
27-327 |
4.86e-48 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177193 [Multi-domain] Cd Length: 347 Bit Score: 164.98 E-value: 4.86e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 27 WWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMN--------FNTLFFPSThMKFILLTLFL 98
Cdd:MTH00135 26 WLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNawltgqwdIQQMSHPLP-TTMITLALAL 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 99 KMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGALIYIFF-LSSIMIGAIGGMNQTSLRKILAFSSIN 177
Cdd:MTH00135 105 KIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLgLTSTLVGGWGGLNQTQLRKILAYSSIA 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 178 HLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNfyflnqlysenkdiMTNIN-LAMSFLSLGGLPPLLGFLP--- 253
Cdd:MTH00135 185 HLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNS--------------STKINtLATSWTKAPALTALTPLILlsl 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 254 -----------KWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIFTLSSMETKWKLNPAKSQSPQLPFLLITLNI 322
Cdd:MTH00135 251 gglppltgfmpKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLPLAISTT 330
|
....*
gi 306960091 323 SGLAL 327
Cdd:MTH00135 331 ATLML 335
|
|
| ND2 |
MTH00105 |
NADH dehydrogenase subunit 2; Provisional |
3-335 |
4.77e-45 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177167 [Multi-domain] Cd Length: 347 Bit Score: 156.93 E-value: 4.77e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 3 MNPS-KVIFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMNFN- 80
Cdd:MTH00105 1 MNPLiLIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMy 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 81 ----TLFFPSTHMKFILLTLFL--KMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAP-SILATYCAYLGA-LIYIFFLS 152
Cdd:MTH00105 81 sgqwTITKLTNPTASTLMTIALamKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPlSILYQISPSINPnLLLTLAIL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 153 SIMIGAIGGMNQTSLRKILAFSSINHLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNFYFLNQL-YSENKDIMT 231
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLsHTWNKTPLM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 232 NINLAMSFLSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF-----TLSSMETKWKLNPA 306
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSltmfpSTNNMKMKWQFENT 320
|
330 340
....*....|....*....|....*....
gi 306960091 307 KsQSPQLPfLLITLNISGLALSSLFILFT 335
Cdd:MTH00105 321 K-PMTLLP-TLIILSTMLLPLTPMLSILE 347
|
|
| ND2 |
MTH00070 |
NADH dehydrogenase subunit 2; Provisional |
3-334 |
4.95e-44 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177142 [Multi-domain] Cd Length: 346 Bit Score: 154.31 E-value: 4.95e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 3 MNP-SKVIFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMNFN- 80
Cdd:MTH00070 1 MSPyALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWf 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 81 ----TLFFPSTHMKFILLT--LFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYL--GALIYIFFLS 152
Cdd:MTH00070 81 tgewTIMNMQTPLPTIMLTiaLMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLlnSNLLIIMGLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 153 SIMIGAIGGMNQTSLRKILAFSSINHLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNFYFLNQLYSE--NKDIM 230
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSwsKNPTL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 231 TNINLaMSFLSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF-----TLSSMETKWKLnp 305
Cdd:MTH00070 241 TSMMM-LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSlttspNTSNSKLYWRF-- 317
|
330 340
....*....|....*....|....*....
gi 306960091 306 aKSQSPQLPFLLITLNISGLALSSLFILF 334
Cdd:MTH00070 318 -KNKTNNLLSLTIILSLMLLPITPTILNL 345
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
3-300 |
1.64e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 152.35 E-value: 1.64e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 3 MNPSKVIFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMNFNTl 82
Cdd:MTH00144 2 SSPSNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNL- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 83 FFPSTHMKFILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGALIYIFFLSSIM---IGAI 159
Cdd:MTH00144 81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVLsalVGSI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 160 GGMNQTSLRKILAFSSINHLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNFYFLNQLYSENKDIMTNINLAMSF 239
Cdd:MTH00144 161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSYKTGLSIISLL 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 306960091 240 LSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIFTLSSMETK 300
Cdd:MTH00144 241 LSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKK 301
|
|
| ND2 |
MTH00197 |
NADH dehydrogenase subunit 2; Provisional |
9-297 |
3.79e-43 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177244 [Multi-domain] Cd Length: 323 Bit Score: 151.36 E-value: 3.79e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 9 IFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMNFNTLFFPSTH 88
Cdd:MTH00197 2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYLSLLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 89 MKFILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGALIYIFFLSSIMIGAIGGMNQTSLR 168
Cdd:MTH00197 82 VVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQSNIR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 169 KILAFSSINHLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNFYFLNQLYSENKDIMTN-INLAMSFLSLGGLPP 247
Cdd:MTH00197 162 QLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNlVFLGLSFLSLGGLPP 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 306960091 248 LLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIFTLSSM 297
Cdd:MTH00197 242 LSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNW 291
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
9-335 |
1.79e-41 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 147.81 E-value: 1.79e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 9 IFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMNFNTL------ 82
Cdd:MTH00200 8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSgqwgis 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 83 -FFPSTHMKFILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGALIYIFFLS--SIMIGAI 159
Cdd:MTH00200 88 eMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGllSVLVGGW 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 160 GGMNQTSLRKILAFSSINHLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNFYFLNQL-YSENKDIMTNINLAMS 238
Cdd:MTH00200 168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLsSSKTKNPILSMLLGLT 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 239 FLSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSI-FTLSSMETKWKLNPAKSQSPQLPF-L 316
Cdd:MTH00200 248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTlLTLSPNQINMMSSWRTKSNSNLLVgL 327
|
330
....*....|....*....
gi 306960091 317 LITLNISGLALSSLFILFT 335
Cdd:MTH00200 328 LLLLSILGLPLTPQLLFLF 346
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
1-296 |
1.18e-36 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 134.52 E-value: 1.18e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 1 MLMNPSKVIFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIMNFN 80
Cdd:MTH00011 2 MSTFPTMFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 81 TL-FFPSTHMKFILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGALIYIFFLS--SIMIG 157
Cdd:MTH00011 82 FPsLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAamSALAG 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 158 AIGGMNQTSLRKILAFSSINHLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNFYFLNQLYSENKDIMTN-INLA 236
Cdd:MTH00011 162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTsMSLF 241
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 237 MSFLSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIFTLSS 296
Cdd:MTH00011 242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSP 301
|
|
| ND2 |
MTH00041 |
NADH dehydrogenase subunit 2; Validated |
8-334 |
1.56e-36 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 177116 [Multi-domain] Cd Length: 349 Bit Score: 134.67 E-value: 1.56e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 8 VIFLSTLIFSSIFAISASSWWTAWMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVI---MNFNTLFF 84
Cdd:MTH00041 7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALiqaWLSGSWSI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 85 PSTHMKF----ILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGA--LIYIFFLSSIMIGA 158
Cdd:MTH00041 87 NGPLNTLssiiITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNsnILILCGILSVLVGG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 159 IGGMNQTSLRKILAFSSINHLGWMIMALSIENSLWIFYFITYSIINFMIIFTMKSNNFYFLNQLYSENKDIMTNINLAM- 237
Cdd:MTH00041 167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIl 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 238 SFLSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF-----TLSSMETKWKLNPAKSQSPQ 312
Cdd:MTH00041 247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSltlfpQHSISLFSWRNSGNITVYGV 326
|
330 340
....*....|....*....|..
gi 306960091 313 LPFLLITLNISGLALSSLFILF 334
Cdd:MTH00041 327 ILSILSSISILGLLLIPLFLSF 348
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
27-207 |
3.79e-19 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 85.83 E-value: 3.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 27 WWTAWMGLEINLLSFIPLI-SNSKNPIVTEASIKYFLIQSIASSTLLFFVIM--------NFNTLFFPSTHMK------- 90
Cdd:pfam00361 4 LLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLmynytgtlSFDELSKALTGGLnssglll 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 91 ---FILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILL-TWQKLAPSILAT----YCAYLGALIYIFFLSSIM---IGAI 159
Cdd:pfam00361 84 lflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGYGLIRrsllYLPSSPFIQQILLILAIIsmlLGSL 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 306960091 160 GGMNQTSLRKILAFSSINHLGWMIMALSIEN----SLWIFYFITYSIINFMI 207
Cdd:pfam00361 164 AALVQTDIKRLLAYSSISHMGYMLIALGAGTiygiQAAIFHLLTHGLFSAGL 215
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
27-292 |
2.12e-15 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 76.22 E-value: 2.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 27 WWTAWMGLEINLLSFIPLISNSKNPIVT-EASIKYFLIQSIASSTLLF---------------FVIMNFNTLFFPSTHMK 90
Cdd:MTH00196 15 WLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFgcallcgttgglhlsYINLVLNSGQSFSSVSV 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 91 -----FILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGALIYIFFLSSIMIGAIGGMNQT 165
Cdd:MTH00196 95 pigylLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSLFVGAIGALNQT 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 166 SLRKILAFSSINHLGWMIMALSIENS-------LWIFYFITYSIINFMIIFTMKSN-NFYFLNQLYSENKDIMTnINLAM 237
Cdd:MTH00196 175 KIKRLLAYSGIGHMGFVLWGIEIGSFesiqaslVYLFIYIIMSICVFSIILALNVYkNLIIEFSGLSRRLPILA-ITLAL 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 306960091 238 SFLSLGGLPPLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF 292
Cdd:MTH00196 254 TFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRIVKILF 308
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
32-292 |
1.42e-11 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 65.14 E-value: 1.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 32 MGLEINLLSFIPLIS-NSKNPIVTEASIKYFLIQSIASSTLLF---FVI-----MNFNTLFFPSTHMK-----------F 91
Cdd:COG1007 129 LGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisLLYgatgsLNLAGIAAALAAGGanspllllglvL 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 92 ILLTLFLKMGAAPLHFWFPEVndkldWENS----------------FILLTwqKLAPSILATYCAYLGALIYIFFLSSIM 155
Cdd:COG1007 209 VLAGLAFKLSAVPFHMWTPDV-----YEGAptpvtaflatapkiaaFAALL--RLLVEAFPGLAADWQLLLAVLAVLSMT 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 156 IGAIGGMNQTSLRKILAFSSINHLGWMIMALSIENSLWI----FYFITYSIIN---FMIIFTMKSNNFYF-----LNQLY 223
Cdd:COG1007 282 VGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaalFYLLAYLFMNlgaFAVILLLSRKGGEAeeiedLAGLA 361
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 306960091 224 SENKD---IMTNINLAMS-------FlslgglppllgfLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF 292
Cdd:COG1007 362 RRSPLlalAMTIFLLSLAgipptagF------------FGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVKAMY 428
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
27-292 |
3.25e-11 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 63.88 E-value: 3.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 27 WWTAWMGLEINLLSFIPLISNSKNPIV-TEASIKYFLIQSIASSTLLFFV-----------IMNFNTLFFPSTHMKFILL 94
Cdd:MTH00199 119 WLSIYLAIELQTLTLFILVALKRDSAYsTEAGLKYFVLGAVSSGLFLFGCallygltgetsIQGINSILTGDVGKILITI 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 95 TLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGALIYIFFLSSIMIGAIGGMNQTSLRKILAFS 174
Cdd:MTH00199 199 SLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGALNQTKIKRLLAYS 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 175 SINHLGWMIMAL------SIENSL-WIFYFITYSIINFMIIFTMKSNNFYFLNQLYSENKDIMTNINLAMSFLSLGGLPP 247
Cdd:MTH00199 279 GIGHMGFILFGVaigsfeSIQASLiYMIIYVIMSICSFSIILSLKLTKGLIVEVSGLSRKNPVIALTLALTFLSIAGIPP 358
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 306960091 248 LLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF 292
Cdd:MTH00199 359 LAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRVVQIIY 403
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
29-292 |
3.26e-08 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 54.57 E-value: 3.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 29 TAWMGLEINLLSFIPLISNSKNPIV-TEASIKYFLIQSIASSTLLFFV--------IMNFNTLF-FPSTHMK-------- 90
Cdd:TIGR01770 126 SIYLGLELQSLCFYVLAGLKRKSRFsTEAGLKYFILGAFSSGLLLFGIsliygftgSLNFEDLLlFLSNGMLnisllllg 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 91 --FILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLA---------PSILATYCAYLGALIYIFFLSSIMIGAI 159
Cdd:TIGR01770 206 ivLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifavflrlfLYILFGFSEAWQIFLAIIAFLSMLIGNF 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 160 GGMNQTSLRKILAFSSINHLGWMIMALSIENSLWI----FYFITYSIINFMI--IFTMKSNNFYFLNQLYSENKDIM-TN 232
Cdd:TIGR01770 286 GALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkavlFYIFIYALMSLGAfgVLSLLRSYKDEWIEYISDFAGLFkTN 365
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 306960091 233 INLAMSFLSLGGLPP----LLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF 292
Cdd:TIGR01770 366 PILAILILIFMFSLAgippLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVMY 429
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
54-292 |
4.50e-08 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 54.44 E-value: 4.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 54 TEASIKYFLIQSIASSTLLFFVIM--------NFNTLFFPSTHMK-----------FILLTLFLKMGAAPLHFWFPEVnd 114
Cdd:PRK05777 153 LEAAIKYFVLGALASGFLLYGMSLlygatgslSFAGIAKALADGSgnsllllfglvFLLVGLAFKLSAVPFHMWTPDV-- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 115 kldWENS----------------FILLTwqKLAPSILATYCAYLGALIYIFFLSSIMIGAIGGMNQTSLRKILAFSSINH 178
Cdd:PRK05777 231 ---YEGAptpvtaflatapkiaaFAVLL--RLLVVAFGGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAH 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 179 LGWMIMALSIENSLWI----FYFITYSIIN---FMIIFTMKSNNFYflnqlySENKDIMTNIN-----LAMSFLSLGGLP 246
Cdd:PRK05777 306 AGYLLVGLAAGTAEGYsavlFYLLAYLFMTlgaFGVISLLRRKGGE------AESISDFAGLSkrsplLAAVMTIFMLSL 379
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 306960091 247 ----PLLGFLPKWLIIQSLINLNMTFILIPAVMLTILTLYFYLRIMFSIF 292
Cdd:PRK05777 380 agipPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIKLMY 429
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
31-188 |
1.83e-07 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 52.46 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 31 WMGLEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIM---NFNTLFFPSTHMK--------------FIL 93
Cdd:COG0651 133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLlygATGTLNMADLAARlaeldpglllaafaLLL 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 94 LTLFLKMGAAPLHFWFPevndkldweNSF----------------------ILLTWQKLAPSILAtycAYLGALIYIFFL 151
Cdd:COG0651 213 VGFGIKAALFPLHFWLP---------DAYpaapspvsallsglltkvgvyaILRVLTLLFGADPA---LFLGTLLLVLGL 280
|
170 180 190
....*....|....*....|....*....|....*..
gi 306960091 152 SSIMIGAIGGMNQTSLRKILAFSSINHLGWMIMALSI 188
Cdd:COG0651 281 LTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGL 317
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
91-187 |
3.51e-07 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 51.78 E-value: 3.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 91 FILLTLFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYCAYLGALIYIFFLSSIMIGAIGGMNQTSLRKI 170
Cdd:MTH00198 304 FITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVITSKLLLSVAIISLVVGAFGALNQTRIKRL 383
|
90
....*....|....*..
gi 306960091 171 LAFSSINHLGWMIMALS 187
Cdd:MTH00198 384 LAYSGIGHIGFILIGVS 400
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-192 |
1.30e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 46.80 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 34 LEINLLSFIPLISNSKNPIVTEASIKYFLIQSIASSTLLFFVIM--------NFNTL--FFPSTH-----MKFILLTLFL 98
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLlygvtgtlNMADLagALAENPtvvtaFGFVLLALAL 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 99 KMGAAPLHFWFPevnDKLDWENSFILLTWQKLAPSIlATYCAY----------------LGALIYIFFLSSIMIGAIGGM 162
Cdd:PRK08375 215 KAAVFPLHTWLP---RAYPAAPPVVTALLSGLVTKV-AVYALIriyftvfggdfrfalgLGWLLAVLALLSMLVGSLAAL 290
|
170 180 190
....*....|....*....|....*....|
gi 306960091 163 NQTSLRKILAFSSINHLGWMIMALSIENSL 192
Cdd:PRK08375 291 GQDDVKRVLAYSTVSQMGYILLGLALLTPL 320
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
34-188 |
2.00e-05 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 46.24 E-value: 2.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 34 LEINLLSFIPLIS-NSKNPIVTEASIKYFLIQSIASSTLLFFV-----------------IMNFNTLFFPSTHMKFILLT 95
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGIallygqygtlnmaylavKMSENPTVVAKIALALFIAG 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 306960091 96 LFLKMGAAPLHFWFPEVNDKLDWENSFILLTWQKLAPSILATYC----------AYLGALIYIFFLSSIMIGAIGGMNQT 165
Cdd:PRK08376 230 LAMKSGAVPVHMWLPDAYPAAPSSISAMLLVIKQAGLYALARVLfsiygpainlATVGWVIIILGCLTMFVGVAMAVVQK 309
|
170 180
....*....|....*....|...
gi 306960091 166 SLRKILAFSSINHLGWMIMALSI 188
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMLLGLGV 332
|
|
| |
