NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|304322865|ref|YP_003856707|]
View 

NADH dehydrogenase subunit 1 (mitochondrion) [Mekongiella xizangensis]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 16-302 4.74e-108

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 316.33  E-value: 4.74e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00193  92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFLWEHLWDCFFLFHNfFY 255
Cdd:MTH00193 172 KYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGD-LL 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 304322865 256 KIDFYFFLLYLSS---WNFTSFSLWKIDVY------SLEELSSFIFNFFCGLSILL 302
Cdd:MTH00193 251 SLLFYLKLLFISFlfiWVRGTLPRFRYDKLmylawkSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 16-302 4.74e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 316.33  E-value: 4.74e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00193  92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFLWEHLWDCFFLFHNfFY 255
Cdd:MTH00193 172 KYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGD-LL 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 304322865 256 KIDFYFFLLYLSS---WNFTSFSLWKIDVY------SLEELSSFIFNFFCGLSILL 302
Cdd:MTH00193 251 SLLFYLKLLFISFlfiWVRGTLPRFRYDKLmylawkSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
16-239 1.83e-69

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 217.73  E-value: 1.83e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865   16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865   96 PYLTYM--CSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMN 173
Cdd:pfam00146  86 PFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 304322865  174 YQLYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFL 239
Cdd:pfam00146 166 AQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFL 231
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 16-230 6.71e-62

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 199.20  E-value: 6.71e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVI 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMC--SFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMN 173
Cdd:COG1005   99 PFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVE 178

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 304322865 174 YQ-LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:COG1005  179 AQaGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFF 236
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 16-302 4.74e-108

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 316.33  E-value: 4.74e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00193  12 IICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIY 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00193  92 PYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQ 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFLWEHLWDCFFLFHNfFY 255
Cdd:MTH00193 172 KYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGGD-LL 250

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 304322865 256 KIDFYFFLLYLSS---WNFTSFSLWKIDVY------SLEELSSFIFNFFCGLSILL 302
Cdd:MTH00193 251 SLLFYLKLLFISFlfiWVRGTLPRFRYDKLmylawkSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 16-263 1.02e-87

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 264.59  E-value: 1.02e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00225  11 LICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLY 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00225  91 PSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQ 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFLWEHLWDCFFlFHNFFY 255
Cdd:MTH00225 171 KYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILF-FGGFFV 249


                 ....*...
gi 304322865 256 KIDFYFFL 263
Cdd:MTH00225 250 TIDLFLIL 257
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 17-235 5.85e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 249.79  E-value: 5.85e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  17 IFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVFP 96
Cdd:MTH00143  12 LCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYP 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  97 YLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQL 176
Cdd:MTH00143  92 SYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQF 171

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 304322865 177 YCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF---YQSML 235
Cdd:MTH00143 172 SVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFlaeYANIL 233
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 16-230 2.18e-72

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 225.93  E-value: 2.18e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00111  15 IIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00111  95 PMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQ 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:MTH00111 175 EPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFF 229
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 16-230 3.22e-72

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 225.17  E-value: 3.22e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00218  12 ILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPL 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00218  92 PLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQ 171

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:MTH00218 172 ETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFF 226
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 16-230 3.97e-70

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 220.26  E-value: 3.97e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00071  15 IIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPL 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00071  95 PMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQ 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:MTH00071 175 EFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 229
NADHdh pfam00146
NADH dehydrogenase;
16-239 1.83e-69

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 217.73  E-value: 1.83e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865   16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:pfam00146   6 LVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVI 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865   96 PYLTYM--CSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMN 173
Cdd:pfam00146  86 PFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVE 165

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 304322865  174 YQLYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFL 239
Cdd:pfam00146 166 AQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFL 231
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 16-230 6.73e-69

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 216.80  E-value: 6.73e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00104  10 IIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALTLALTMWIPL 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00104  90 PMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLITTQ 169

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:MTH00104 170 EHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFF 224
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 19-230 1.59e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 215.76  E-value: 1.59e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  19 VLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVFPYL 98
Cdd:MTH00195  15 VLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSP 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  99 TYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQLYC 178
Cdd:MTH00195  95 FGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFS 174

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 304322865 179 WFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:MTH00195 175 WVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIF 226
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 16-230 5.63e-68

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 214.84  E-value: 5.63e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00040  14 IVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLI 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00040  94 PVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQ 173

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:MTH00040 174 NGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFF 228
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 16-230 3.60e-65

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 206.94  E-value: 3.60e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00010  13 YVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00010  93 PHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ 172

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322865 176 lYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:MTH00010 173 -YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIF 226
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 16-230 5.37e-65

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 207.15  E-value: 5.37e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00134  16 IVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPM 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYQ 175
Cdd:MTH00134  96 PMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQ 175

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 304322865 176 LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:MTH00134 176 ESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 230
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 16-230 6.71e-62

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 199.20  E-value: 6.71e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:COG1005   19 LVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVI 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMC--SFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMN 173
Cdd:COG1005   99 PFGPGLVlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVE 178

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 304322865 174 YQ-LYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:COG1005  179 AQaGGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFF 236
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 16-266 7.14e-58

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 188.78  E-value: 7.14e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00054  12 LVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVI 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLT--YMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMN 173
Cdd:MTH00054  92 PYGEgvVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVL 171

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865 174 YQLYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFLWEHLWDCFFLFHNF 253
Cdd:MTH00054 172 AQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWL 251

                        250
                 ....*....|...
gi 304322865 254 FYKIDFYFFLLYL 266
Cdd:MTH00054 252 VISGPTSYFSNFV 264
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
16-230 1.18e-57

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 188.09  E-value: 1.18e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:PRK06076  20 LVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVI 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYL-TYMCSFM-YGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMN 173
Cdd:PRK06076 100 PFGpELVIADLnVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVE 179

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 304322865 174 YQLYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:PRK06076 180 AQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFF 236
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 1-249 2.06e-55

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 182.63  E-value: 2.06e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865   1 MSYDLLMFLLNFLLLVIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFS 80
Cdd:MTH00216   1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  81 PIFSLMISLVVWSVFPYL--TYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLS 158
Cdd:MTH00216  81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865 159 LIFLVGSFNLVDFMNYQL-YCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLEL 237
Cdd:MTH00216 161 VLLCVGSLSITEIVLAQNnGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240

                        250
                 ....*....|..
gi 304322865 238 FLWEHLWDCFFL 249
Cdd:MTH00216 241 ILMSCLTTILFL 252
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 16-249 3.64e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 164.03  E-value: 3.64e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFV--LIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWS 93
Cdd:MTH00029  15 IIFVplLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  94 VFPYL--TYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDF 171
Cdd:MTH00029  95 IVTMDqgVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEI 174

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 304322865 172 MNYQLYCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFLWEHLWDCFFL 249
Cdd:MTH00029 175 VISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFL 252
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 16-268 1.45e-43

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 150.43  E-value: 1.45e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:MTH00090   6 MIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMNYq 175
Cdd:MTH00090  86 PYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVSSFSL- 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865 176 lycWFVVICFPLMIscfaSCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFLWEHLWDCFFLFHNFFY 255
Cdd:MTH00090 165 ---SLFVIYLPFLI----MIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLM 237

                        250
                 ....*....|...
gi 304322865 256 KIDFYFFLLYLSS 268
Cdd:MTH00090 238 LFLIFSLLIFIRS 250
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 17-230 4.00e-35

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 128.50  E-value: 4.00e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  17 IFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIfsLMISLVVWSVFP 96
Cdd:MTH00058  12 LIILLLVAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVF--LLVLLVVFYCFI 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  97 Y-LTYMCSFM-YGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMny 174
Cdd:MTH00058  90 YgSYYSGSYSsLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDFY-- 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 304322865 175 qLYCWFVVICFPLMISCFASC-LAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIF 230
Cdd:MTH00058 168 -YSGWLSVLLFPLIYILWLVCiLCETNRTPFDYGESESELVSGFNTEYSGIYFTCLF 223
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
16-239 1.02e-20

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 89.86  E-value: 1.02e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPnkvgfiGILQPFSDALKLLTKEHfVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:COG0650   11 LLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKET-VVPETASWLFRAAPYVALAAMLLAALLV 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 PYLTYMC--SFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMN 173
Cdd:COG0650   84 PVLTTGPplSFSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVA 163

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 304322865 174 YQL---YCWFVVICFPLMISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELFL 239
Cdd:COG0650  164 YQAahgPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFV 232
ndhA CHL00032
NADH dehydrogenase subunit 1
 16-303 2.53e-19

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 86.93  E-value: 2.53e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  16 VIFVLIAVAFLTLFERSVLGYIHIRKGPNKVGFIGILQPFSDALKLLTKEHFVLISSNYLLYYFSPIFSLMISLVVWSVF 95
Cdd:CHL00032  37 VLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVI 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865  96 P--YLTYMCSFMYGFLFFLCCTSMGVYTMMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIFLVGSFNLVDFMN 173
Cdd:CHL00032 117 PfgYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVE 196

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304322865 174 YQ-------LYCWFVVICFplmISCFASCLAETNRTPFDFAEGESELVSGFNVEYGAGGFTLIFYQSMLELflwehlwdc 246
Cdd:CHL00032 197 AQskygfwgWNLWRQPIGF---IVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNL--------- 264

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 304322865 247 ffLFHNFFYKIdfyfflLYLSSWNftsFSLWKIDVYSLEELSSF--IFNFFCGLSILLT 303
Cdd:CHL00032 265 --LVSSLFVTV------LYLGGWN---LSIPYIFIPELFEINKTggVFGTTIGIFITLA 312
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH