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Conserved domains on  [gi|304272660|gb|ADM18164|]
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cytochrome b, partial (mitochondrion) [Thamnomanes schistogynus]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 706.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 304272660 321 LASLTYFTTLLVLFPIAGALENKMLNF 347
Cdd:MTH00119 354 LASILYFTILLILFPLLGALENKMLNY 380
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 706.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 304272660 321 LASLTYFTTLLVLFPIAGALENKMLNF 347
Cdd:MTH00119 354 LASILYFTILLILFPLLGALENKMLNY 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-341 3.21e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 364.88  E-value: 3.21e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYlyKE- 79
Cdd:COG1290   42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  80 ---TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 155
Cdd:COG1290  120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 156 AIAGLTLIHLTFLHETGSDNPLG----LSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNllGDPENFTPANPLV 231
Cdd:COG1290  200 LLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 232 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQ 309
Cdd:COG1290  278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                        330       340       350
                 ....*....|....*....|....*....|..
gi 304272660 310 PVehPFIIIGQLASLTYFTTLLVLFPIAGALE 341
Cdd:COG1290  358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 6.66e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 257.68  E-value: 6.66e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSY--LYK 78
Cdd:cd00284   25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIA 158
Cdd:cd00284  105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184

                        170
                 ....*....|....*
gi 304272660 159 GLTLIHLTFLHETGS 173
Cdd:cd00284  185 VIVILHLLFLHEQGS 199
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-172 1.91e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 228.04  E-value: 1.91e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660    1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIA 158
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175

                         170
                  ....*....|....
gi 304272660  159 GLTLIHLTFLHETG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 197-307 1.18e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.18e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  197 ILGFMAMflpLLSLAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLH 276
Cdd:TIGR01156  44 ILGTIAC---VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 304272660  277 KSKQRTMTF-RPLSQLMFWIlvsNLLILTWVG 307
Cdd:TIGR01156 116 NVNKFQNPFrRPVATTVFLF---GTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 706.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00119  34 FGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00119 114 WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00119 194 TLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00119 274 YFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 304272660 321 LASLTYFTTLLVLFPIAGALENKMLNF 347
Cdd:MTH00119 354 LASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 645.17  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00131  33 FGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKET 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00131 113 WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAA 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00131 193 TILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEW 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00131 273 YFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQ 352

                        330       340
                 ....*....|....*....|....*..
gi 304272660 321 LASLTYFTTLLVLFPIAGALENKMLNF 347
Cdd:MTH00131 353 VASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00100
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 638.22  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00100  33 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLET 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00100 113 WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITAL 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00100 193 AMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEW 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00100 273 YFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQ 352

                        330       340
                 ....*....|....*....|....*..
gi 304272660 321 LASLTYFTTLLVLFPIAGALENKMLNF 347
Cdd:MTH00100 353 LASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00074
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 621.70  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00074  34 FGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00074 114 WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGA 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00074 194 SIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00074 274 YFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 304272660 321 LASLTYFTTLLVLFPIAGALENKMLNF 347
Cdd:MTH00074 354 AASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-336 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 590.73  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00191  30 FGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKET 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00191 110 WNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAAL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00191 190 SLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEW 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00191 270 YFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQ 349

                        330
                 ....*....|....*.
gi 304272660 321 LASLTYFTTLLVLFPI 336
Cdd:MTH00191 350 ISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 1-334 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 584.82  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00156  23 FGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHT 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00156 103 WMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAM 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00156 183 VMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEW 262

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00156 263 YFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQ 342

                        330
                 ....*....|....
gi 304272660 321 LASLTYFTTLLVLF 334
Cdd:MTH00156 343 ILTILYFLYFIINP 356
CYTB MTH00034
cytochrome b; Validated
 1-346 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 564.72  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00034  33 FGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIET 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00034 113 WNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAAL 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00034 193 SIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEW 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00034 273 YFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQ 352

                        330       340
                 ....*....|....*....|....*.
gi 304272660 321 LASLTYFTTLLVLFPIAGALENKMLN 346
Cdd:MTH00034 353 VASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00145
cytochrome b; Provisional
 1-347 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 563.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00145  34 FGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHT 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00145 114 WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00145 194 SVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00145 274 YFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQ 353

                        330       340
                 ....*....|....*....|....*..
gi 304272660 321 LASLTYFTTLLVLfPIAGALENKMLNF 347
Cdd:MTH00145 354 VFTVLYFLFFLIL-PLVQKLWDNILDY 379
CYTB MTH00016
cytochrome b; Validated
 1-345 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 533.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00016  34 FGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00016 114 WNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAAL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00016 194 SMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00016 274 YFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQ 353

                        330       340
                 ....*....|....*....|....*
gi 304272660 321 LASLTYFtTLLVLFPIAGALENKML 345
Cdd:MTH00016 354 IFTVFYF-FYFMINPLLMKLWDKLL 377
CYTB MTH00022
cytochrome b; Validated
 1-347 6.32e-174

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 488.06  E-value: 6.32e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00022  32 FGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHV 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00022 112 WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFL 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00022 192 VIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEW 271

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00022 272 YFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQ 351

                        330       340
                 ....*....|....*....|....*..
gi 304272660 321 LASLTYFTTLLVLFPIAGALENKMLNF 347
Cdd:MTH00022 352 LLSFFYFFYFLVLIPLLGELENQLLFK 378
CYTB MTH00053
cytochrome b; Provisional
 1-346 1.83e-173

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 486.91  E-value: 1.83e-173
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00053  34 FGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIV 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00053 114 WNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGL 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00053 194 ALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00053 274 YFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQ 353

                        330       340
                 ....*....|....*....|....*.
gi 304272660 321 LASLTYFTTLLVLFPIAGALENKMLN 346
Cdd:MTH00053 354 IASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-346 8.39e-162

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 457.08  E-value: 8.39e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00224  34 YGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSET 113

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00224 114 WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGA 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00224 194 TILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEW 273

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00224 274 YFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQ 353

                        330       340
                 ....*....|....*....|....*.
gi 304272660 321 LASLTYFtTLLVLFPIAGALENKMLN 346
Cdd:MTH00224 354 VFTILYF-SYFIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-342 1.53e-131

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 380.44  E-value: 1.53e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00033  30 FGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLT 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00033 110 WIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGL 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFS--PNLLGDPENFTPANPLVTPPHIKP 238
Cdd:MTH00033 190 VLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQP 269

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 239 EWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQPV-EHPFII 317
Cdd:MTH00033 270 EWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVL 349

                        330       340
                 ....*....|....*....|....*
gi 304272660 318 IGQLASLTYFTTLLVLFPIAGALEN 342
Cdd:MTH00033 350 IGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-341 3.21e-125

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 364.88  E-value: 3.21e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYlyKE- 79
Cdd:COG1290   42 FGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKp 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  80 ---TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPF 155
Cdd:COG1290  120 relNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPA 199

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 156 AIAGLTLIHLTFLHETGSDNPLG----LSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNllGDPENFTPANPLV 231
Cdd:COG1290  200 LLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLA 277

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 232 TPPHIKPEWYFLFAYAILRSIP--NKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTWVGSQ 309
Cdd:COG1290  278 TPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGAN 357

                        330       340       350
                 ....*....|....*....|....*....|..
gi 304272660 310 PVehPFIIIGQLASLTYFTTLLVLFPIAGALE 341
Cdd:COG1290  358 PP--IATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 1-334 1.80e-113

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 333.44  E-value: 1.80e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKET 80
Cdd:MTH00086  22 FGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  81 WNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGL 160
Cdd:MTH00086 102 WISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 161 TLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMaMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00086 182 VLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNII-FWLVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEW 260

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSkqrTMTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00086 261 YFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQ 337

                        330
                 ....*....|....
gi 304272660 321 LASLTYFTTLLVLF 334
Cdd:MTH00086 338 IFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 2-324 2.20e-87

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 266.85  E-value: 2.20e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   2 GSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETW 81
Cdd:MTH00046  25 GFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVW 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  82 NTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIAGLT 161
Cdd:MTH00046 105 NVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLM 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 162 LIHLTFLHETGSDNPLGLSSN-CDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEW 240
Cdd:MTH00046 185 VVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEW 264

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 241 YFLFAYAILRSIPNKLGGvLALAASVLILFLIPFLHKSKqrtmTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQ 320
Cdd:MTH00046 265 YFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQ 339


                 ....
gi 304272660 321 LASL 324
Cdd:MTH00046 340 LFSV 343
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-173 6.66e-86

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 257.68  E-value: 6.66e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSY--LYK 78
Cdd:cd00284   25 FGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRE 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIA 158
Cdd:cd00284  105 LTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIA 184

                        170
                 ....*....|....*
gi 304272660 159 GLTLIHLTFLHETGS 173
Cdd:cd00284  185 VIVILHLLFLHEQGS 199
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-172 1.91e-74

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 228.04  E-value: 1.91e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660    1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYG--SYLYK 78
Cdd:pfam00033  16 FGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRE 95

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   79 ETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFAIA 158
Cdd:pfam00033  96 LTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILA 175

                         170
                  ....*....|....
gi 304272660  159 GLTLIHLTFLHETG 172
Cdd:pfam00033 176 ILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 175-322 6.64e-57

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 181.69  E-value: 6.64e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 175 NPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 254
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 304272660 255 KLGGVLALAASVLILFLIPFLHKSKQRTmTFRPLSQLMFWILVSNLLILTWVGSQPVEHPFIIIGQLA 322
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
226-326 3.25e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 160.34  E-value: 3.25e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  226 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLMFWILVSNLLILTW 305
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 304272660  306 VGSQPVEHPFIIIGQLASLTY 326
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
56-221 1.50e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 148.16  E-value: 1.50e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   56 SMFFICIYLHIGRGLYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 133
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  134 GGFSVDNPTLTRFFALHF-LLPFAIAGLTLIHLTFLHETGSDNPLGLSSNCDKIPFHPYFSSKDILGFMAMFLPLLSLAM 212
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 304272660  213 FSPNLLGDP 221
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-177 3.97e-37

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 132.91  E-value: 3.97e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKE- 79
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  80 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFAI 157
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 304272660 158 AGLTLIHLTFLHETGSDNPL 177
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-177 4.83e-34

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 124.83  E-value: 4.83e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660   1 FGSLLGICLMTQIITGLLMAMHYTADTTLAFTSVAHTCRNVQFGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKE- 79
Cdd:CHL00070  36 LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRe 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  80 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFAI 157
Cdd:CHL00070 116 lTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLT 195

                        170       180
                 ....*....|....*....|
gi 304272660 158 AGLTLIHLTFLHETGSDNPL 177
Cdd:CHL00070 196 AVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 197-295 8.72e-14

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 68.10  E-value: 8.72e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 197 ILGFMAMflpLLSLAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLH 276
Cdd:CHL00058  44 ILGTIAC---NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                         90       100
                 ....*....|....*....|
gi 304272660 277 K-SKQRTMTFRPLSQLMFWI 295
Cdd:CHL00058 116 NvNKFQNPFRRPVATTVFLI 135
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 197-307 7.54e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 65.59  E-value: 7.54e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660 197 ILGFMAMflpLLSLAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLH 276
Cdd:COG5679   45 ILGTIAL---CIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                         90       100       110
                 ....*....|....*....|....*....|..
gi 304272660 277 KSKQRTMTF-RPLSQLMFwiLVSNLLILtWVG 307
Cdd:COG5679  117 NVNKFQNPFrRPVATAVF--LFGTLVTL-WLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 197-307 1.18e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.18e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 304272660  197 ILGFMAMflpLLSLAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLH 276
Cdd:TIGR01156  44 ILGTIAC---VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 304272660  277 KSKQRTMTF-RPLSQLMFWIlvsNLLILTWVG 307
Cdd:TIGR01156 116 NVNKFQNPFrRPVATTVFLF---GTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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