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Conserved domains on  [gi|301506350|gb|ADK77642|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Mekongiella xizangensis]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 9.78e-39

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 125.74  E-value: 9.78e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350   1 MLMIISSSIISFSIPMMIMIIASTLSKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 301506350  81 MKSSNLLIWSMSTLMFLLILLSGLYYEWNQGALNWAK 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 9.78e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 125.74  E-value: 9.78e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350   1 MLMIISSSIISFSIPMMIMIIASTLSKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 301506350  81 MKSSNLLIWSMSTLMFLLILLSGLYYEWNQGALNWAK 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 3.14e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 100.96  E-value: 3.14e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350   19 MIIASTLSKKSINdREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLL-IWSMstLMFL 97
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFgFVEM--LIFI 77

                          90
                  ....*....|....*..
gi 301506350   98 LILLSGLYYEWNQGALN 114
Cdd:pfam00507  78 AILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 15-115 1.34e-25

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 92.49  E-value: 1.34e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  15 PMMIMIIASTLSKKSiNDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLL-IWSMst 93
Cdd:COG0838   19 ALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFgLIEM-- 95

                         90       100
                 ....*....|....*....|..
gi 301506350  94 LMFLLILLSGLYYEWNQGALNW 115
Cdd:COG0838   96 LVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-117 9.78e-39

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 125.74  E-value: 9.78e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350   1 MLMIISSSIISFSIPMMIMIIASTLSKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMII 80
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 301506350  81 MKSSNLLIWSMSTLMFLLILLSGLYYEWNQGALNWAK 117
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-115 2.91e-37

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 121.81  E-value: 2.91e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350   3 MIISSSIISFSIPMMIMIIASTLSKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMK 82
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 301506350  83 SSNLLIWSMSTLMFLLILLSGLYYEWNQGALNW 115
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-117 1.06e-36

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 120.87  E-value: 1.06e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350   1 MLMIISSSIISFSIPMMIMIIASTLSKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMII 80
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 301506350  81 MKSSNLLIWSMSTLMFLLILLSGLYYEWNQGALNWAK 117
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-116 8.90e-31

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 105.71  E-value: 8.90e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350   1 MLMIISSSIISFSIPMMIMIIASTLSKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMII 80
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 301506350  81 MKSSNLLIWSMSTLMFLLILLSGLYYEWNQGALNWA 116
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-114 3.14e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 100.96  E-value: 3.14e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350   19 MIIASTLSKKSINdREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLL-IWSMstLMFL 97
Cdd:pfam00507   1 LLLSRLLGPKRPN-PEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFgFVEM--LIFI 77

                          90
                  ....*....|....*..
gi 301506350   98 LILLSGLYYEWNQGALN 114
Cdd:pfam00507  78 AILLVGLVYAWKKGALE 94
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 34-117 2.43e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 94.24  E-value: 2.43e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  34 EKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLLIWSMSTLMFLLILLSGLYYEWNQGAL 113
Cdd:MTH00106  32 EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNTMLTMALLLISLLALSLAYEWTQKGL 111


                 ....
gi 301506350 114 NWAK 117
Cdd:MTH00106 112 EWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 32-116 8.96e-26

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 93.12  E-value: 8.96e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  32 DREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPI---MIIMKSSNLLIWSmstLMFLLILLSGLYYEW 108
Cdd:MTH00042  31 DLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLppaTLITNPSTLLPIS---LIFLIILTIGLVYEW 107


                 ....*...
gi 301506350 109 NQGALNWA 116
Cdd:MTH00042 108 VNGGLEWA 115
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 16-116 1.19e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 92.75  E-value: 1.19e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  16 MMIMIIASTLSKKSIN----------DREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPI---MIIMK 82
Cdd:MTH00069   3 MLMLLISTILSLILITisfwlplnnpDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTpwaSQLNT 82

                         90       100       110
                 ....*....|....*....|....*....|....
gi 301506350  83 SSNLLIWSMstlMFLLILLSGLYYEWNQGALNWA 116
Cdd:MTH00069  83 PTNTLFWST---LILILLTLGLIYEWIQGGLEWA 113
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 15-115 1.34e-25

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 92.49  E-value: 1.34e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  15 PMMIMIIASTLSKKSiNDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLL-IWSMst 93
Cdd:COG0838   19 ALAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWAVVFRELGWFgLIEM-- 95

                         90       100
                 ....*....|....*....|..
gi 301506350  94 LMFLLILLSGLYYEWNQGALNW 115
Cdd:COG0838   96 LVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 16-116 5.59e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 91.13  E-value: 5.59e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  16 MMIMIIASTLS----------KKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMI---IMK 82
Cdd:MTH00136   5 TTILTITIALSlilaivsfwlPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWgdqLPS 84

                         90       100       110
                 ....*....|....*....|....*....|....
gi 301506350  83 SSNLLIWSMSTLMFLLIllsGLYYEWNQGALNWA 116
Cdd:MTH00136  85 PLLTFFWATAVLILLTL---GLIYEWLQGGLEWA 115
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 17-116 1.28e-24

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 89.94  E-value: 1.28e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  17 MIMIIASTLSKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLLIWSMSTLMF 96
Cdd:MTH00113  15 TILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWATII 94

                         90       100
                 ....*....|....*....|
gi 301506350  97 LLILLSGLYYEWNQGALNWA 116
Cdd:MTH00113  95 LTLLTLGLIYEWLQGGLEWA 114
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 15-116 5.74e-24

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 88.38  E-value: 5.74e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  15 PMMIMIIASTLSKKSiNDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMI-IMKSSNLLIWSMst 93
Cdd:PRK06602  22 GILLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPWAVsFREIGWLGFVEA-- 98

                         90       100
                 ....*....|....*....|...
gi 301506350  94 LMFLLILLSGLYYEWNQGALNWA 116
Cdd:PRK06602  99 MIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 17-115 3.63e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 86.10  E-value: 3.63e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  17 MIMIIASTLSKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLLIWSMStlMF 96
Cdd:MTH00203  16 LILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLSSLSLLLAF--LF 93

                         90
                 ....*....|....*....
gi 301506350  97 LLILLSGLYYEWNQGALNW 115
Cdd:MTH00203  94 LILLTLGLIYEWLQGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 32-115 3.93e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 76.29  E-value: 3.93e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  32 DREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLL-IWSMstLMFLLILLSGLYYEWNQ 110
Cdd:MTH00055  35 DSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFgFWVM--YLFLIILTIGLIYEWVK 112


                 ....*
gi 301506350 111 GALNW 115
Cdd:MTH00055 113 GGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 18-115 4.38e-18

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 73.17  E-value: 4.38e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  18 IMIIASTLSKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLL-IWSMstLMF 96
Cdd:MTH00018  16 LFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFgFWTM--VGF 93

                         90
                 ....*....|....*....
gi 301506350  97 LLILLSGLYYEWNQGALNW 115
Cdd:MTH00018  94 LFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 32-115 1.00e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 67.65  E-value: 1.00e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  32 DREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLL-IWSMSTlmFLLILLSGLYYEWNQ 110
Cdd:MTH00030  40 DSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLNLFsFWIVYT--FLIVLAIGLAYEWIK 117


                 ....*
gi 301506350 111 GALNW 115
Cdd:MTH00030 118 GGLEW 122
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
17-115 1.32e-11

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 56.98  E-value: 1.32e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  17 MIMIIASTLSKKSIN-DRE--KNSPFECGFDP-KSSARMpfSIQFFLIAVIFLIFDIEIVLILPIMIIMKssnLLIW--S 90
Cdd:PRK08489  26 LTTRLARFISRKLAQkNTEklKLAIYECGPEPvKQPNRI--SSHFYIMALLFILFDVEIVFMFPWAVDFK---LLGLfgL 100

                         90       100
                 ....*....|....*....|....*
gi 301506350  91 MSTLMFLLILLSGLYYEWNQGALNW 115
Cdd:PRK08489 101 IEMLLFIVLLTIGFIYAWKKGALEW 125
ndhC CHL00022
NADH dehydrogenase subunit 3
 34-115 2.76e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 53.45  E-value: 2.76e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  34 EKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPimiimkssnlliWSMS-----------TLMFLLILLS 102
Cdd:CHL00022  39 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP------------WAMSfdvlgvsafieALIFVLILIV 106

                         90
                 ....*....|...
gi 301506350 103 GLYYEWNQGALNW 115
Cdd:CHL00022 107 GLVYAWRKGALEW 119
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 19-115 8.41e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 51.98  E-value: 8.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  19 MIIASTLSKKSINdREKNSPFECGFDPKSSARMP--FSIQFFLIAVIFLIFDIEIVLILPIMIIMKSsnLLIWSM-STLM 95
Cdd:PRK07928  22 VVVASLVGPKRYN-RAKLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYPWAVSFDA--LGVFGLvEMAL 98

                         90       100
                 ....*....|....*....|
gi 301506350  96 FLLILLSGLYYEWNQGALNW 115
Cdd:PRK07928  99 FMLTVFVAYAYVWRRGGLEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
32-115 6.89e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 49.74  E-value: 6.89e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  32 DREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLLIWsMSTLMFLLILLSGLYYEWNQG 111
Cdd:PRK07756  39 SAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFAL-IEMLIFVVMLLVGLAYAWKKK 117


                 ....
gi 301506350 112 ALNW 115
Cdd:PRK07756 118 VLQW 121
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 38-117 9.01e-07

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 44.80  E-value: 9.01e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  38 PFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMIIMKSSNLLIWsMSTLMFLLILLSGLYYEWNQGALNWAK 117
Cdd:PRK06432  66 PYESGEVAREIWGGPSINQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPF-IETLIFLAMPLFAVYYAFKMGYMRWLK 144
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-115 1.52e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 43.34  E-value: 1.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350   1 MLMIISSSIISFSIPMMIMIIASTLSKKSiNDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPIMII 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKK-FDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGLLVS 79

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 301506350  81 MKSSNLLIWsmstlMFLLILLSGLYYEWNQGALNW 115
Cdd:MTH00092  80 DFSSLISFF-----MLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 26-115 1.10e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 38.73  E-value: 1.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301506350  26 SKKSINDREKNSPFECGFDPKSSARMPFSIQFFLIAVIFLIFDIEIVLILPimiiMKSSNLLIWSM-STLMFLLILLSGL 104
Cdd:MTH00060  28 NKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLN----MPFQGLLFYNFwYYYFFLLLLFLGF 103

                         90
                 ....*....|.
gi 301506350 105 YYEWNQGALNW 115
Cdd:MTH00060 104 VVELFSGYVRW 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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