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Conserved domains on  [gi|301503284|gb|ADK76204|]
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cytochrome b (mitochondrion) [Brotogeris cyanoptera]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 726.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   1 MAPNLRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  81 RNIHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 161 LVEWAWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLML 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 241 TSLALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPnKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFTIILILLPIISSLENKILN 378
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 726.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   1 MAPNLRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  81 RNIHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 161 LVEWAWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLML 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 241 TSLALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPnKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFTIILILLPIISSLENKILN 378
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-359 1.06e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 364.88  E-value: 1.06e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  12 LKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASFF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  92 FICIYLHIARGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWG 167
Cdd:COG1290  100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 168 GFSVDNPTLTRFFALH-FLLPFMIASLVLIHLTFLQKTGSNNPLG----LPSNCDKIPFHPYFSLKDLLGFMIMLLMLTS 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 243 LALFSPNllGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP---KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsaKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQlvEHPFIIIGQLASLTYF 359
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGAN--PPIATLLGSINTVTYF 373
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 5.42e-94

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 279.25  E-value: 5.42e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  10 PLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  90 FFFICIYLHIARGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 301503284 168 GFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.01e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 245.37  E-value: 1.01e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   19 LIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   99 IARGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 301503284  177 TRFFALHFLLPFMIASLVLIHLTFLQKTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 726.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   1 MAPNLRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  81 RNIHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 161 LVEWAWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLML 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 241 TSLALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPnKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFTIILILLPIISSLENKILN 378
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 663.66  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   1 MApNLRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00131   1 MA-SLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  81 RNIHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00131  80 RNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 161 LVEWAWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLML 240
Cdd:MTH00131 160 LVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 241 TSLALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:MTH00131 240 TSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPnKLGGVLALLFSILVLMVVPILHTSKQRGLTFRP 319

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFTIILILLPIISSLENKILN 378
Cdd:MTH00131 320 LTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00100
cytochrome b; Provisional
 4-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 650.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   4 NLRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNI 83
Cdd:MTH00100   3 NIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  84 HANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVE 163
Cdd:MTH00100  83 HANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 164 WAWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLMLTSL 243
Cdd:MTH00100 163 WIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 244 ALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQ 322
Cdd:MTH00100 243 VLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPnKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 301503284 323 LLFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFTIILILLPIISSLENKIL 377
Cdd:MTH00100 323 CLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 642.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   1 MAPNLRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  81 RNIHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 161 LVEWAWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLML 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 241 TSLALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPnKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFTIILILLPIISSLENKILN 378
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00191
cytochrome b; Provisional
 5-360 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 610.76  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   5 LRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIH 84
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  85 ANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 165 AWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLMLTSLA 244
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 245 LFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQL 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPnKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 301503284 324 LFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFT 360
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFF 357
CYTB MTH00156
cytochrome b; Provisional
 12-359 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 603.31  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  12 LKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASFF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  92 FICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 172 DNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLMLTSLALFSPNLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 252 GDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQLLFWMLAA 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPnKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340
                 ....*....|....*....|....*....
gi 301503284 331 NLFILTWVGSQLVEHPFIIIGQLASLTYF 359
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYF 349
CYTB MTH00145
cytochrome b; Provisional
 5-359 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 588.80  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   5 LRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIH 84
Cdd:MTH00145   5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  85 ANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00145  85 ANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 165 AWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLMLTSLA 244
Cdd:MTH00145 165 VWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 245 LFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQL 323
Cdd:MTH00145 245 LFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPnKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQV 324

                        330       340       350
                 ....*....|....*....|....*....|....*.
gi 301503284 324 LFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYF 359
Cdd:MTH00145 325 LFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF 360
CYTB MTH00034
cytochrome b; Validated
 5-378 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 578.97  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   5 LRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIH 84
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  85 ANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 165 AWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLMLTSLA 244
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 245 LFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQL 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPnKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 301503284 324 LFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFTIILILLPIISSLENKILN 378
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLIF 378
CYTB MTH00016
cytochrome b; Validated
 1-360 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 548.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   1 MAPNLRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  81 RNIHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 161 LVEWAWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLML 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 241 TSLALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPnKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFT 360
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF 361
CYTB MTH00022
cytochrome b; Validated
 5-378 4.86e-174

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 489.60  E-value: 4.86e-174
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   5 LRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIH 84
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  85 ANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEW 164
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 165 AWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLMLTSLA 244
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 245 LFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQL 323
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPnKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 301503284 324 LFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFTIILILLPIISSLENKILN 378
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-378 1.43e-170

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 480.74  E-value: 1.43e-170
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   1 MAPNLRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  81 RNIHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 161 LVEWAWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLML 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 241 TSLALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPnKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFTIILILLPIISSLENKILN 378
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00224
cytochrome b; Provisional
 1-360 1.30e-167

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 473.25  E-value: 1.30e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   1 MAPNLRKSHPLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLI 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  81 RNIHANGASFFFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQT 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 161 LVEWAWGGFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLML 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 241 TSLALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPnKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQLVEHPFIIIGQLASLTYFT 360
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS 361
CYTB MTH00033
cytochrome b; Provisional
 17-359 1.83e-132

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 384.29  E-value: 1.83e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  17 NSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  97 LHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 177 TRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLMLTSLALFS--PNLLGDP 254
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 255 EYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQLLFWMLAANLF 333
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPnKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                        330       340
                 ....*....|....*....|....*..
gi 301503284 334 ILTWVGSQLV-EHPFIIIGQLASLTYF 359
Cdd:MTH00033 333 ILTWIGSAPAgADPYVLIGRIATIFYF 359
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-359 1.06e-124

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 364.88  E-value: 1.06e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  12 LKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASFF 91
Cdd:COG1290   20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  92 FICIYLHIARGFYYGSYlyKE----TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWG 167
Cdd:COG1290  100 FAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 168 GFSVDNPTLTRFFALH-FLLPFMIASLVLIHLTFLQKTGSNNPLG----LPSNCDKIPFHPYFSLKDLLGFMIMLLMLTS 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFAL 257

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 243 LALFSPNllGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP---KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRP 319
Cdd:COG1290  258 LAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsaKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 301503284 320 ASQLLFWMLAANLFILTWVGSQlvEHPFIIIGQLASLTYF 359
Cdd:COG1290  336 VRTALGVAFIVFFIVLTILGAN--PPIATLLGSINTVTYF 373
CYTB MTH00086
cytochrome b; Provisional
 15-359 4.02e-117

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 344.23  E-value: 4.02e-117
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  15 VNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASFFFIC 94
Cdd:MTH00086   3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  95 IYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNP 174
Cdd:MTH00086  83 LYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSA 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 175 TLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGfMIMLLMLTSLALFSPNLLGDP 254
Cdd:MTH00086 163 TLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDP 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 255 EYFTTANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSkqrTMAFRPASQLLFWMLAANLF 333
Cdd:MTH00086 242 EMFIEADPMMSPVHIVPEWYFLFAYAILRAIPnKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNV 318

                        330       340
                 ....*....|....*....|....*.
gi 301503284 334 ILTWVGSQLVEHPFIIIGQLASLTYF 359
Cdd:MTH00086 319 ILSWLGQCLVEYPFLFLSQIFSFIYF 344
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 5.42e-94

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 279.25  E-value: 5.42e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  10 PLLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGAS 89
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  90 FFFICIYLHIARGFYYGSY--LYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 301503284 168 GFSVDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSN 207
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-356 3.16e-91

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 278.02  E-value: 3.16e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  11 LLKTVNNSLIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASF 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  91 FFICIYLHIARGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFS 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 171 VDNPTLTRFFALHFLLPFMIASLVLIHLTFLQKTGSNNPLGLPSN-CDKIPFHPYFSLKDLLGFMIMLLMLTSLALFSPN 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 250 LLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSI-PKLGGvLALAASVLVLFLSPLLHKSKqrtmAFRPASQLLFWML 328
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSInSKIGG-LVLVLSFLFFLWVPTFNGSS----VYSVWRQVNFWLI 315

                        330       340
                 ....*....|....*....|....*...
gi 301503284 329 AANLFILTWVGSQLVEHPFIIIGQLASL 356
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSV 343
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.01e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 245.37  E-value: 1.01e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   19 LIDLPTPPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   99 IARGFYYG--SYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 301503284  177 TRFFALHFLLPFMIASLVLIHLTFLQKTG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 1.28e-50

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 166.28  E-value: 1.28e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 208 NPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLMLTSLALFSPNLLGDPEYFTTANPLVTPPHIKPEWYFLFAYAILRSIP- 286
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPn 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 301503284 287 KLGGVLALAASVLVLFLSPLLHKSKQRTMaFRPASQLLFWMLAANLFILTWVGSQLVEHPFIIIGQLA 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRSQ-FRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-254 2.39e-48

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 161.26  E-value: 2.39e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284   89 SFFFICIYLHIARGFYYGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  167 GGFSVDNPTLTRFFALHF-LLPFMIASLVLIHLTFLQKTGSNNPLGLPSNCDKIPFHPYFSLKDLLGFMIMLLMLTSLAL 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 301503284  246 FSPNLLGDP 254
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
260-358 3.87e-42

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 142.62  E-value: 3.87e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  260 ANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHKSKQRTMAFRPASQLLFWMLAANLFILTWV 338
Cdd:pfam00032   2 ANPLVTPAHIVPEWYFLPFYAILRSIPsKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWL 81

                          90       100
                  ....*....|....*....|
gi 301503284  339 GSQLVEHPFIIIGQLASLTY 358
Cdd:pfam00032  82 GKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 34-210 1.77e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 132.14  E-value: 1.77e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  34 FGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIARGFYYGSYLYKE- 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 113 -TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFMI 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170       180
                 ....*....|....*....|
gi 301503284 191 ASLVLIHLTFLQKTGSNNPL 210
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 25-210 6.58e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 127.53  E-value: 6.58e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284  25 PPNISAWWNFGSLLGICLATQILTGLLLAAHYTADTSLAFSSVANMCRNVQYGWLIRNIHANGASFFFICIYLHIARGFY 104
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 105 YGSYLYKE--TWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFAL 182
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*....
gi 301503284 183 H-FLLPFMIASLVLIHLTFLQKTGSNNPL 210
Cdd:CHL00070 187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 240-325 1.28e-08

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 53.47  E-value: 1.28e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301503284 240 LTSLALFSPNLLGDPeyfttANPLVTPPHIKPEWYFLFAYAILRSIP-KLGGVLALAASVLVLFLSPLLHK-SKQRTMAF 317
Cdd:CHL00058  51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPnKLLGVLLMASVPAGLLTVPFLENvNKFQNPFR 125


                 ....*...
gi 301503284 318 RPASQLLF 325
Cdd:CHL00058 126 RPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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