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Conserved domains on  [gi|301323141|gb|ADK70342|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Epinecrophylla gutturalis]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.85e-162

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 456.59  E-value: 3.85e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   1 MNPQAKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWC 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  81 TGQWDITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNHMKQWQTNKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 301323141 321 TSMTITTFTTMSIMLLPLSPMILTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.85e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 456.59  E-value: 3.85e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   1 MNPQAKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWC 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  81 TGQWDITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNHMKQWQTNKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 301323141 321 TSMTITTFTTMSIMLLPLSPMILTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-298 1.10e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 126.77  E-value: 1.10e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   7 LLSLTSLfLGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWD 85
Cdd:COG1007  106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  86 ITQLTHPMS------------CLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALK----FPPTSLFLLTSPSL 149
Cdd:COG1007  185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 150 NP---TMLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTL--ITFYL--YCLMTIPIFLTLNTI 222
Cdd:COG1007  265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLL 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 223 K-----TLKLTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:COG1007  345 SrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                 .
gi 301323141 298 Y 298
Cdd:COG1007  425 K 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 6.21e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 6.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   23 SNHWMMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   91 HPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLA-TALKFPP------TSLFLLTSPSLNPTMLTLmAIASTA 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirrSLLYLPSSPFIQQILLIL-AIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  164 LGGWAGLNQTQTRKILAFSSISHLGWMTIILM----YNPKLTLITFYLYCLMTIPIFL-----TLNTIKTLKLTTMSTAW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLA 239

                         250       260       270
                  ....*....|....*....|....*....|....
gi 301323141  235 TKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-297 1.23e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.96  E-value: 1.23e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141    7 LLSLTSLFLgttiTISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWD 85
Cdd:TIGR01770 109 LFALLGIFL----LVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   86 ITQLTHP------------MSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALK----FPPTSLFLLTSPSL 149
Cdd:TIGR01770 185 FEDLLLFlsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  150 NPT---MLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTL--ITFYL--YCLMTIPIFLTLNTI 222
Cdd:TIGR01770 265 SEAwqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  223 KTLK------LTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:TIGR01770 345 RSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424


                  .
gi 301323141  297 A 297
Cdd:TIGR01770 425 V 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-346 3.85e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 456.59  E-value: 3.85e-162
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   1 MNPQAKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWC 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  81 TGQWDITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIA 160
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPL 240
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNHMKQWQTNKS 320
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320

                        330       340
                 ....*....|....*....|....*.
gi 301323141 321 TSMTITTFTTMSIMLLPLSPMILTTT 346
Cdd:MTH00112 321 KNTLTATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-344 6.54e-136

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 390.32  E-value: 6.54e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   1 MNPQAKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWC 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  81 TGQWDITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSlNPTMLTLMAIA 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPL 240
Cdd:MTH00135 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPAL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNHMKQWQT-NK 319
Cdd:MTH00135 240 TALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpST 319

                        330       340
                 ....*....|....*....|....*
gi 301323141 320 STSMTITTFTTMSIMLLPLSPMILT 344
Cdd:MTH00135 320 QLTLPLAISTTATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-344 1.16e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 381.96  E-value: 1.16e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   1 MNPQAKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWC 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  81 TGQWDITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIA 160
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPL 240
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNHMKQWQTNKS 320
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNK 320

                        330       340
                 ....*....|....*....|....
gi 301323141 321 TSMTITTFTTMSIMLLPLSPMILT 344
Cdd:MTH00070 321 TNNLLSLTIILSLMLLPITPTILN 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-346 1.25e-121

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 353.77  E-value: 1.25e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   1 MNPQAKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWC 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  81 TGQWDITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIA 160
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPL 240
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPnSTNHMK-QWQ-TN 318
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfEN 319

                        330       340
                 ....*....|....*....|....*...
gi 301323141 319 KSTSMTITTFTTMSIMLLPLSPMILTTT 346
Cdd:MTH00105 320 TKPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-346 4.51e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 291.49  E-value: 4.51e-97
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   1 MNPQAKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWC 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  81 TGQWDITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIA 160
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPL 240
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPNSTNHMKQWQTNKS 320
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320

                        330       340
                 ....*....|....*....|....*.
gi 301323141 321 TSMTITTFTTMSIMLLPLSPMILTTT 346
Cdd:MTH00200 321 SNLLVGLLLLLSILGLPLTPQLLFLF 346
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-307 2.74e-85

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 261.40  E-value: 2.74e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   1 MNPQAKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWC 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  81 TGQWDITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIA 160
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPL 240
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPN 307
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQ 307
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-343 3.54e-62

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 201.59  E-value: 3.54e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   1 MNPQAKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWc 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  81 tgqwdITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTspsLNPTMLTLMAIA 160
Cdd:MTH00160  81 -----NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIIL 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 161 STALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPL 240
Cdd:MTH00160 153 SAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKI 232

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCAtITLPPNSTNHMKQWQTNKS 320
Cdd:MTH00160 233 KFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSS-LMLNYNKNKWNLKKKKNKF 311

                        330       340
                 ....*....|....*....|...
gi 301323141 321 TSMTITTFTTMSIMLLPLSPMIL 343
Cdd:MTH00160 312 SLILNFLSFISLFGLILSSLLFL 334
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 5-302 5.58e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 182.78  E-value: 5.58e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   5 AKLLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQW 84
Cdd:MTH00144   5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  85 DITqlthpmscLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPtsLFLLTSPSLNPTMLT---LMAIAS 161
Cdd:MTH00144  85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAP--LFLLSNFLDLYWLAYllcVISVLS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 162 TALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTiKTLKLTTMSTAWTKIPPLT 241
Cdd:MTH00144 155 ALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTG 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 301323141 242 ATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATI 302
Cdd:MTH00144 234 LSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 7-310 6.99e-50

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 169.58  E-value: 6.99e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   7 LLSLTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTnawctgQWDI 86
Cdd:MTH00011   9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  87 TQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIASTALGG 166
Cdd:MTH00011  83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 167 WAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPLTATLML 246
Cdd:MTH00011 163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 301323141 247 MLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYcATITLPPNSTN 310
Cdd:MTH00011 243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 10-298 5.32e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 156.37  E-value: 5.32e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  10 LTSLFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAwctgqwdITQL 89
Cdd:MTH00197   4 LFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSF-------SNLY 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  90 THPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPtsLFLLTSPSLNPTMLTLMAIASTALGGWAG 169
Cdd:MTH00197  77 LSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAP--LLILAFNSSSFMGLLICSVLSSLIGGIGG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 170 LNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYCLMTIPIFLTLNTIKTLKLTTMSTAWTKIPPLTATLMLMLL 249
Cdd:MTH00197 155 MNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFL 234

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*....
gi 301323141 250 SLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:MTH00197 235 SLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 7-298 1.10e-32

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 126.77  E-value: 1.10e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   7 LLSLTSLfLGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWD 85
Cdd:COG1007  106 ALLLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLYGATGSLN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  86 ITQLTHPMS------------CLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALK----FPPTSLFLLTSPSL 149
Cdd:COG1007  185 LAGIAAALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGL 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 150 NP---TMLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTL--ITFYL--YCLMTIPIFLTLNTI 222
Cdd:COG1007  265 AAdwqLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLL 344

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 223 K-----TLKLTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLA 297
Cdd:COG1007  345 SrkggeAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVV 424


                 .
gi 301323141 298 Y 298
Cdd:COG1007  425 K 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
7-296 7.24e-29

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 116.07  E-value: 7.24e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   7 LLSLTSLfLGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWD 85
Cdd:PRK05777 107 LLVLFAL-LGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  86 ITQLTHP------------MSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALK----FPPTSLFLLTSPSL 149
Cdd:PRK05777 186 FAGIAKAladgsgnsllllFGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAVLLRLLVVAFGGL 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 150 NPT---MLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTL--ITFYL--YCLMTIPIF--LTLN 220
Cdd:PRK05777 266 SEDwqqVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFgvISLL 345

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 221 TIKTLKLTTMST----AWTKiPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:PRK05777 346 RRKGGEAESISDfaglSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-296 4.45e-28

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 112.43  E-value: 4.45e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  15 LGTTITISSNHWMMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDI------- 86
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGCALLCGTTGGLHLsyinlvl 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  87 ------TQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATAlkfPPTSLF-LLTSPSLNPTMLTLMAI 159
Cdd:MTH00196  84 nsgqsfSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIV---PKLGIFsILVSIGLNVNILLIGGL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 160 ASTALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNP----KLTLITFYLYCLMTIPIF---LTLNTIKTLkLTTMST 232
Cdd:MTH00196 161 FSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFsiiLALNVYKNL-IIEFSG 239

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 301323141 233 AWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:MTH00196 240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-268 6.21e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 105.09  E-value: 6.21e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   23 SNHWMMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQL-----------T 90
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   91 HPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLA-TALKFPP------TSLFLLTSPSLNPTMLTLmAIASTA 163
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAaTLVKAGGyglirrSLLYLPSSPFIQQILLIL-AIISML 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  164 LGGWAGLNQTQTRKILAFSSISHLGWMTIILM----YNPKLTLITFYLYCLMTIPIFL-----TLNTIKTLKLTTMSTAW 234
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcagsvIYRRVHTRNIRDYGGLA 239

                         250       260       270
                  ....*....|....*....|....*....|....
gi 301323141  235 TKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 7-297 1.23e-25

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 106.96  E-value: 1.23e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141    7 LLSLTSLFLgttiTISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWD 85
Cdd:TIGR01770 109 LFALLGIFL----LVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLN 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   86 ITQLTHP------------MSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALK----FPPTSLFLLTSPSL 149
Cdd:TIGR01770 185 FEDLLLFlsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaifAVFLRLFLYILFGF 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  150 NPT---MLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTL--ITFYL--YCLMTIPIFLTLNTI 222
Cdd:TIGR01770 265 SEAwqiFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIkaVLFYIfiYALMSLGAFGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  223 KTLK------LTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:TIGR01770 345 RSYKdewieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424


                  .
gi 301323141  297 A 297
Cdd:TIGR01770 425 V 425
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 15-296 1.32e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 103.94  E-value: 1.32e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  15 LGTTITISSNHWMMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDI----TQL 89
Cdd:MTH00199 108 LGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginSIL 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  90 THPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNptMLTLMAIASTALGGWAG 169
Cdd:MTH00199 188 TGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTN--VVLICAVLSIIYGAIGA 265

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 170 LNQTQTRKILAFSSISHLGWMTIILMYNP----KLTLITFYLYCLMTIPIF---LTLNTIKTLkLTTMSTAWTKIPPLTA 242
Cdd:MTH00199 266 LNQTKIKRLLAYSGIGHMGFILFGVAIGSfesiQASLIYMIIYVIMSICSFsiiLSLKLTKGL-IVEVSGLSRKNPVIAL 344

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 301323141 243 TLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:MTH00199 345 TLALTFLSIAGIPPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 30-296 7.73e-19

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 86.74  E-value: 7.73e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  30 WAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQLTHPMS----------CLLLT 99
Cdd:COG0651  133 FVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAARLAeldpglllaaFALLL 212

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 100 TAISIKLGLVPFHFWFPE-----------VLQGTSLMTGL--LLATALKFPPTSLFLLTSPslnptMLTLMAIASTALGG 166
Cdd:COG0651  213 VGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFGADPALFLGT-----LLLVLGLLTMLVGA 287

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 167 WAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYC----LMTIPIFLT----LNTIKTLKLTTMSTAWTKIP 238
Cdd:COG0651  288 LGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLlnhaLAKALLFLAagaiERATGTRDLDKLGGLGKRMP 367

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 301323141 239 PLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:COG0651  368 LTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVRI 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 15-302 2.20e-17

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 82.98  E-value: 2.20e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  15 LGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLVQATASALLLFSSTTNAWCTGQ-- 83
Cdd:MTH00198 199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  84 ------------WDITQLTHPMSCLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFppTSLFLLTSPSLNP 151
Cdd:MTH00198 279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKF--TVYILLTSLVITS 356

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 152 TMLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTIIL-------MYNPKLTLITFYLYCLMTIPIFLTLNTIKT 224
Cdd:MTH00198 357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVsagtyesLQASWTYAVTYLVSALASFTVICTLEEFGT 436

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 225 L------------------KLTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLS 286
Cdd:MTH00198 437 RtptsrqrdgsfgnynlvrRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSIKIAFSSSLSIYYLVA 516

                        330       340
                 ....*....|....*....|...
gi 301323141 287 LLGL-------FFYLRLAycATI 302
Cdd:MTH00198 517 LFAIictcisaFYYIRIV--ATI 537
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-307 1.74e-12

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 67.98  E-value: 1.74e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQLTH--PMSCLLLT------TAISI 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGalAENPTVVTafgfvlLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 105 KLGLVPFHFWFPEVLQGTS-LMTGLLLATALKFPPTSLFLLT------SPSLNPTMLTLM---AIASTALGGWAGLNQTQ 174
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPpVVTALLSGLVTKVAVYALIRIYftvfggDFRFALGLGWLLavlALLSMLVGSLAALGQDD 294

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 175 TRKILAFSSISHLGWMTIILMYNPKLTLI--TFYL--YCLMTIPIFLTLNTI----KTLKLTTMSTAWTKIPPLTATLML 246
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILLGLALLTPLALAagLLHLlhHALMKGALFLAAGAIevtyGTRRLSELSGLGRRMPLTAAAFAV 374

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 301323141 247 MLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAYCATITLPPN 307
Cdd:PRK08375 375 ASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGPPPP 435
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-296 1.75e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 68.11  E-value: 1.75e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  51 RAIEAATKYFLVQATASALLL--FSsttnaWCTGQ-------WDI------TQLTHPMSCLL----LTTAISIKLGLVPF 111
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVygFS-----WLYGLsggeielQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPF 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 112 HFWFPEVLQG-----------TSLMTGLLLATalkfpptSLFLLTSPSLNP---TMLTLMAIASTALGGWAGLNQTQTRK 177
Cdd:CHL00049 234 HQWTPDVYEGsptpvvaflsvTSKVAASALAT-------RIFDIPFYFSSNewhLLLEILAILSMILGNLIAITQTSMKR 306

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 178 ILAFSSISHLGWMTI-ILMYNPKLTLITFYLYclMTIPIFLTLNTIKTLKLTTMSTA----------WTKIPPLTATLML 246
Cdd:CHL00049 307 MLAYSSIGQIGYVIIgIIVGDSNDGYASMITY--MLFYIFMNLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLAL 384

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|
gi 301323141 247 MLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:CHL00049 385 CLLSLGGIPPLAGFFGKLYLFWCGWQAGLYFLVSIGLLTSVISIYYYLKI 434
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-263 1.54e-09

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 58.91  E-value: 1.54e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  50 PRAIEAATKYFLVQATASALLLFSST---------TNAWCTGQWDITQLTHP--MSCLLLTTAISIKLGLVPFHFWFPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllyglsggsTQLSAIALALITSPSLGlaLALVFVIAGIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 119 LQGTSLMTGLLLATALK---FPPTSLFLLTS-PSLNP---TMLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMT 191
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKaagFALAIRLLVTAfPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 192 IILMYNPK--LTLITFYL--YCLMTIPIF--LTLNTIKTL--KLTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPK 263
Cdd:PRK02504 317 IGLVAGTEagYASMVFYLlaYLFMNLGAFacVILFSLRTGtdQISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-300 8.03e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 56.64  E-value: 8.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  33 LEINTLAILPLIS-KSHHPRAIEAATKYFLVQATASALLLFS---------STTNAWCTGQWDITQLTHPMSCL-LLTTA 101
Cdd:PRK08376 150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 102 ISIKLGLVPFHFW----FPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPT----MLTLMAIASTALGGWAGLNQT 173
Cdd:PRK08376 230 LAMKSGAVPVHMWlpdaYPAAPSSISAMLLVIKQAGLYALARVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 174 QTRKILAFSSISHLGWM------TIILMYNPKLTLITF----------YLYCLMTIPIFLT----LNTIKTLKLTTMSTA 233
Cdd:PRK08376 310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGEialaggiyhiVNHALYKALLFLTagavIYETGTRNLNELGGL 389

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 301323141 234 WTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQelTKQEMTPTATIIALL-SLLGLFFYLRLAYCA 300
Cdd:PRK08376 390 ARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYE--SSALFNPILGVIAMIgSVLTLASFVKVFHTA 455
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 96-284 2.89e-08

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 55.32  E-value: 2.89e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  96 LLLTTAISiKLGLVPFHFWFPEVLQGTSLMTGLLLATAL---------KFPPTslfLLTSPSLNPTMLTLmAIASTALGG 166
Cdd:PRK12644 208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVLVL-GLATMLLGG 282

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 167 WAGLNQTQTRKILAFSSISHLGWMTIILMY-NPKLTLITFYLYC---LMTIPIFLTLNTIK----TLKLTTMSTAWTKIP 238
Cdd:PRK12644 283 WRALRQHDLKLILAYGTVSQLGFLTVLVGIgTRDAALAGLAMLLahaLFKAALFLVVGIIDhstgTRDIRKLSGLGRRQP 362

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 301323141 239 PLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIAL 284
Cdd:PRK12644 363 VLAVVAALAAASMAGLPPLLGFVAKEAALEAVLHDGALGPAGPVVL 408
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-192 6.07e-08

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 53.93  E-value: 6.07e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  49 HPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQW--DITQLT-HPMS-------CLLLTTAISIKLGLVPFHFWFPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAaAPLPltaqlllFLAFFIAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 119 LQ-----GTSLMTGLLLATA----LKFPPTsLFLLTSPSLNPTMLTLmAIASTALGGWAGLNQTQTRKILAFSSISHLGW 189
Cdd:COG1008  236 HVeaptaGSVLLAGVLLKMGgyglLRFALP-LFPEASAYFAPLLAAL-GVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                 ...
gi 301323141 190 MTI 192
Cdd:COG1008  314 VLL 316
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 109-289 1.54e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 53.00  E-value: 1.54e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 109 VPFHFWFPEVLQG-TSLMTGLLLATALKfppTSLFLLTSpsLNPTM---------LTLMAIASTALGGWAGLNQTQTRKI 178
Cdd:PRK12647 212 FPFHFWLPNAMEApTPVSAYLHSATMVK---AGIYLLAR--LNPVLggtplwqtiLPLFGGLTMLTGALLAVRQTDLKLI 286

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 179 LAFSSISHLGWMTIILMYNPKLTLITFYLY----CLMTIPIFLTLNTIK----TLKLTTMSTAWTKIPPLTATLMLMLLS 250
Cdd:PRK12647 287 LAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgTRDITKLGGLRRAMPITAAAALLAALS 366

                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 301323141 251 LAGLPPLTGFLPKWLIIQELTkqEMTPTATIIALLSLLG 289
Cdd:PRK12647 367 MAGLPPLFGFLAKELIYEALL--EAPLWSLILTVAAVLG 403
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-288 9.83e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 50.32  E-value: 9.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   50 PRAIEAATKYFLVQATASALLLFSSTTNAWCTGQ-WDITQL-THPMSC-------LLLTTAISIKLGLVPFHFWFPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  120 QGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLM------AIASTALGGWAGLNQTQTRKILAFSSISHLGWMTII 193
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLRFNLPLFPDASLYFApvlaalGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLG 311

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  194 LMYNPKLTLI--TFYLYC--LMTIPIFLTLNTI----KTLKLTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWL 265
Cdd:TIGR01972 312 IFSFNELGISgaVFQMIShgLITAALFLLVGVLyeraHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFL 391

                         250       260
                  ....*....|....*....|...
gi 301323141  266 IIQELTKqeMTPTATIIALLSLL 288
Cdd:TIGR01972 392 ILLGSFK--VNPVVAFLAALGIV 412
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 9-298 1.05e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 50.15  E-value: 1.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   9 SLTSLFLG--TTITISSNHWMMaWAGLEINTLAILPLISKSHH-PRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWD 85
Cdd:COG1009  115 AYLLLFMAamLGLVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  86 ITQLTH------------PMSCLLLTTAISiKLGLVPFHFWFPEVlqgtslMTGlllatalkfpPTS------------- 140
Cdd:COG1009  194 FSELLAaaptilssplltLILLLLLLGAFG-KSAQFPLHFWLPDA------MEG----------PTPvsallhaatmvka 256

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 141 -LFLL--TSP--SLNPTMLTLMAI--ASTAL-GGWAGLNQTQTRKILAFSSISHLGWMTIILmynpKLTLITFYLYCLMT 212
Cdd:COG1009  257 gVYLLarLSPlfALSPVWLTVVAIigAITALfAALIALAQTDIKRVLAYSTVSQLGYMFLAL----GVGAYVAALFHLLT 332

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 213 IPIFLTL---------NTIKTLKLTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQE-LTKQEMTPTATII 282
Cdd:COG1009  333 HAFFKALlflgagsviHATGTRDIRKMGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAaLEAGGLGPLLLAV 412

                        330
                 ....*....|....*..
gi 301323141 283 ALL-SLLGLFFYLRLAY 298
Cdd:COG1009  413 ALLgAFLTAFYSFRLFF 429
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 34-298 1.17e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 50.00  E-value: 1.17e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  34 EINTLAILPLISKSHHpRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQLTHPMS-----------CLLLTTAI 102
Cdd:PRK08668 128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFADISQGLIndtstgfalivFLFLLAFG 206

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 103 SIKLGLVPFHFWFPE-----------VLQGTSLMTG---LLLATALkFPPTSLFL-----LTSPSLNPTMLTLMAIaSTA 163
Cdd:PRK08668 207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYV-LPGTKLFSefgtyRGVPLFNYILAWLGNI-SII 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 164 LGGWAGLNQTQTRKILAFSSISHLGWmtiILMYNPKLTLITF-------YLYCLMTIPIFLTLNTI----KTLKLTTMST 232
Cdd:PRK08668 285 VGTLMAILQEDIKKLIAYSSVANGGY---ILVGLGLGTSLGFagglfhvFNHALFKGLFFLIFAAViyrtGTTKISEMGG 361

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 301323141 233 AWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:PRK08668 362 LIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFLYVFRPLA 427
PRK12650 PRK12650
DUF4040 family protein;
97-304 4.46e-06

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 48.50  E-value: 4.46e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  97 LLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSL--NPTMLTLMAIAS--TAL-GGWAGLN 171
Cdd:PRK12650 213 LIAVAAFTKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVWNWLLIIVGmiTALmGAVFAVQ 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 172 QTQTRKILAFSSISHLGWM--TIILMYNPKLT--LITFYLYCLMTIPIFLTLNTIK----TLKLTTMSTAWTKIPPLTAT 243
Cdd:PRK12650 293 KTDLKKLTAYSTVSQLGWIvaTIGVGTPFALTaaVVHTLAHALFKSSLFMLIGVVDhqagTRDIRRLGSLWRRMPFTFVS 372

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 301323141 244 LMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMtPTATIIALLSLLGLFFYLRLAYCATITL 304
Cdd:PRK12650 373 VTIAALSMAAVPPLFGFVSKEGMLTAFLEAPG-GNAGVVLLLVGAALGAVFTFAYSARLVL 432
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-267 1.17e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.04  E-value: 1.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQL-----------THPMSCLLLTTA 101
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGIGFLYAITGTLNMGDMfliiqdlptnrAIQIGVLFIMVG 218

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 102 ISIKLGLVPFHFWFPEV-----------LQGTS--LMTGLLLATALKFPPTSLFLLTSPsLNPTMLTLMAIAsTALGGWA 168
Cdd:PRK12662 219 LFIKAALFPFHKWLIQAyseapsfisvfFSGTStkVMIYLIIRIVYDVFKANFVFTTLP-FNNVFMILAALA-IVFGSVL 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 169 GLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLY----CLMTIPIFLTLNTIK----TLKLTTMSTAWTKIPPL 240
Cdd:PRK12662 297 AILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPKI 376

                        250       260
                 ....*....|....*....|....*..
gi 301323141 241 TATLMLMLLSLAGLPPLTGFLPKWLII 267
Cdd:PRK12662 377 TLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-192 1.30e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 46.73  E-value: 1.30e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  50 PRAIEAATKYFLVQATASALLLFS----STTNAWCTGQWDITQL-THPMS---------CLLLttAISIKLGLVPFHFWF 115
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADLlNLPLPpgvqywlflAFFI--AFAVKMPMFPLHTWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 116 PEVLQ-----GTSLMTGLLLATA----LKF--PptsLFLLTSPSLNPTMLTLmAIASTALGGWAGLNQTQTRKILAFSSI 184
Cdd:PRK05846 235 PDAHVqaptaGSVLLAGILLKMGayglLRFslP---LFPDASHEFAPIIITL-GVIAIIYGALVALAQTDIKKLIAYSSI 310


                 ....*...
gi 301323141 185 SHLGWMTI 192
Cdd:PRK05846 311 SHMGFVTL 318
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 92-268 2.01e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 46.49  E-value: 2.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  92 PMSCLLLTTAI--SIKLGLvpfHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAI----ASTAL- 164
Cdd:MTH00032 226 IIGILLLIGCIgkSAQLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgALTAFf 302

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 165 GGWAGLNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYL--YCLMTIPIFLTLN------TIKTLKLTTMSTAWTK 236
Cdd:MTH00032 303 AATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLSAGsvihstTVDEQDMRKMGGLIHS 382

                        170       180       190
                 ....*....|....*....|....*....|..
gi 301323141 237 IPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00032 383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLILE 414
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 13-192 2.10e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 45.90  E-value: 2.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  13 LFLGTTITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATA------SALLLFSSTTNAWCTGQWDI 86
Cdd:PRK08676 111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  87 TQLTHP----------MSCLLLTTAISIKLGLVPFHFWFPEV-LQGTSLMTGLLLATALKFPPTSLFLLTS-------PS 148
Cdd:PRK08676 191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 301323141 149 LNPTMLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:PRK08676 271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 55-270 9.50e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 44.34  E-value: 9.50e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  55 AATKYFLVQATASALLLFSSTTNAWCTGQWDITQLTHP-----MSCLLLTTAISIKLGLVPFHFWFPEVLQG-----TSL 124
Cdd:PRK08667 163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASagilsLVFLLLFLGFGIKAGIIPFHKWLPYAHPAspsnvSAL 242

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 125 MTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIASTA-LGGWAGLNQTQTRKILAFSSISHLG--------WMTIILM 195
Cdd:PRK08667 243 MSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISAlLGVIYALKEHDLKGLLAYSSIENIGiilmgiglYVIFGVY 322

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 196 YNPKLTLITFYLYCLMTIP-------IFLTLNTI----KTLKLTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKW 264
Cdd:PRK08667 323 GLDTLALLALGGALFHSLNhalfkslLFLTAGSVvhatGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASEL 402


                 ....*.
gi 301323141 265 LIIQEL 270
Cdd:PRK08667 403 LLYESF 408
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-271 1.00e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 43.79  E-value: 1.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  33 LEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQLTH--PMSCLLLTTAISIKLGLVP 110
Cdd:PRK07234 123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 111 FHFWFPEVLQGTSLMTGLLLATALK----FPPTSLFLLTSPSLNPtmLTLMAIASTALGGWAGLNQTQTRKILAFSSISH 186
Cdd:PRK07234 203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 187 LGWMTIILMYNPKLTLItfylYCLMTIPIFLTLNTIKTLKLT----TMSTAWTKIPpltatLMLMLLSLAGLPPLTGFLP 262
Cdd:PRK07234 281 LGFILAAPLVGGLYALA----HGLVKSTLFLCAGALPSRNFTelisQMLGIGKWIP-----LTMASFSIAGFPLLAGFVS 351


                 ....*....
gi 301323141 263 KWLIIQELT 271
Cdd:PRK07234 352 KVLTLKNLL 360
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-340 2.04e-04

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 38.78  E-value: 2.04e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 301323141  291 FFYLRLAYCATITLPPNSTNHMKQWQTNKSTSMTITTFTTMS-IMLLPLSP 340
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPTLTTLsILLLPLTP 51
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
 5-270 4.64e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 42.08  E-value: 4.64e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   5 AKLLSLTSLflGTTITISSNHWMMAWAGLEINTLA---ILPLISKSHHPraieaATKYFLVQATASALLLFSSTTNAWCT 81
Cdd:PRK06459  75 SSLYILTIL--GMAIVLTSDNYLLFLAGWEIMTIPsyvAIALTKKNKRP-----AFVFMAFGELSTVLILAGFAWAFIIS 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  82 GQWDITQLTHPMSCLLLTTAISIKLGLVPFHF--WFPE-----------VLQGTSLMTGLLLATALkfpptsLFLLTSPS 148
Cdd:PRK06459 148 GTTNFSYLPSPVPLILASFGFIIKMGMMPFLVseWLPIahgnapsnfsaILSATMTLMGVYGILKM------TILTQTIP 221

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 149 LNPTMLTLMAIA--STALGGWAGLNQTQTRKILAFSSISHLGWM-----TIILMYNPKLTLITFYLYCLMTIP------- 214
Cdd:PRK06459 222 IGYFGLTILAIGafSILFGALYAYVSENVKGLLAFSTIENNGAIlvalgLYMVTKQLITSIEHFSLITVILYSfahsvak 301

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 301323141 215 --IFLTLNTIKTLKLTTMST---AWTKIppltaTLMLMLLSLAGLPPLTGFLPKWLIIQEL 270
Cdd:PRK06459 302 tgLFLSSGLQEKQSITYSKKirnRWIEL-----GLTLLASSLSGLLPNIGGVASWLLLESL 357
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
55-190 5.92e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.61  E-value: 5.92e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  55 AATKYFLVQATASALLLFSSTTNAWCTG--QWDITQL---THPMSCLLLTTA-----ISIKLGLVPFHFWFPEVLQGTSL 124
Cdd:PRK06473 158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAHVEAST 237

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 301323141 125 MTGLLLATALKFPPT--------SLFLLTSPSLNPTMLTLMAIaSTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK06473 238 PVSVLLAGVLLKLGTygllrfgvGLFPEAWVYLAPWLATWAVV-SVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 95-298 7.27e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 41.22  E-value: 7.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  95 CLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPTMLTLMAIA-----STALGGWAG 169
Cdd:MTH00020 213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVTivgslTVFFAATVG 292

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 170 LNQTQTRKILAFSSISHLGWMTIILMynpkltlITFY---LYCLMTIPIFLTL------NTIKTL----KLTTMSTAWTK 236
Cdd:MTH00020 293 LVQNDLKKVIAYSTCSQLGYMVVACG-------LSHYsisLFHLMNHAFFKALlflsagSVIHALsdeqDMRKMGGLISF 365

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 301323141 237 IPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLS-LLGLFFYLRLAY 298
Cdd:MTH00020 366 LPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSaLLTAFYSIRLIY 428
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
34-298 9.04e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 40.79  E-value: 9.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  34 EINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQ-----LTHPMSCLLLTTAISIKLGL 108
Cdd:PRK06277 130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 109 V------PFHFWFPEV-----------LQGTS--LMTGLLLATALKFPPTSLFlltsPSLNpTMLTLMAIASTALGGWAG 169
Cdd:PRK06277 210 LygsglpPFHTIKSDIyakakpfgsalLQTFSkfVLVALMLVIFKLFGGLSYF----PSAQ-GVLIALSVLAMVFGVVMA 284

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 170 LNQTQTRKILAFSSISHLGWMTIILMYNPKLTLITFYLYC----LMTIPIFLTLNTI----KTLKLTTMSTAWTKIPPLT 241
Cdd:PRK06277 285 LLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAinhvIYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVA 364

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 301323141 242 ATLMLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRLAY 298
Cdd:PRK06277 365 FMVLCAKLAISGVPPFNGFQSKLMLAQAAMQANMPELAIIMIIVSIGTFVSMMKAFY 421
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 9-192 1.22e-03

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 40.68  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141   9 SLTSLFLGTT-ITISSNHWMMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLVQATASALLLFSS----------TTN 77
Cdd:PRK06458 112 GMYQLFLFTMlLALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGD 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  78 AWCTGQW-DITQLTHPMSCLLLTTAISI-------KLGLVPFHFWFP----EVLQGTS-LMTGLLLATALkFPPTSLFLL 144
Cdd:PRK06458 192 GEMAILWtELLKHASLLDPTLMKLAFVFlligfgtKVGLFPMHAWLPdahsEAPSPVSaLLSGVLLNVAL-YAVLRYYIL 270

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 301323141 145 TSPSLNP----TMLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTI 192
Cdd:PRK06458 271 IDAAIGSdfpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-263 1.36e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.58  E-value: 1.36e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  48 HHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQLTHPMSC--------LLLTTAISIKLGLV------PFHF 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSELienikghpLFLITLILIFIGAAaksaqgPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 114 WFPEVLQGTSLMTGLLLATALKFPPTSLFLLTSPSLNPT-----MLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLG 188
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 189 WMTIILMYN----PKLTL--ITFYLYCLMTIPIFLTL------NTIKTLKLTTMSTAWTKIPPLTATLMLMLLSLAGLPP 256
Cdd:PRK12649 316 YLMTMYGYTtyhePGLGVaaATFHLLNHATFKACLFLvagivaHEAATRDIRKLGGLRKEMPITFIVASIAALAMAGIPP 395


                 ....*..
gi 301323141 257 LTGFLPK 263
Cdd:PRK12649 396 LNGFLSK 402
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 101-195 1.40e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.29  E-value: 1.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 101 AISIKLGLVPFHFWFPEV-----LQGTSLMTGLLLATA------LKFPptsLFLLTSPSLNPTMLTlMAIASTALGGWAG 169
Cdd:MTH00226 239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVIA-MGIVGIVYGSFAT 314

                         90       100
                 ....*....|....*....|....*.
gi 301323141 170 LNQTQTRKILAFSSISHLGWMTIILM 195
Cdd:MTH00226 315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
 103-296 1.95e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 39.93  E-value: 1.95e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 103 SIKLGLVPFHFWFPEVLQG-----TSLMTGLL-----LATALKFpptSLFLLTSPSLNPTMLTLMAIASTALGGWAGLNQ 172
Cdd:PRK07691 220 ATKAGLFPLYFWLPGSYYAppiaiAALFGALLtkvgvYAIARTF---TLFFSHDTSFTHYLILILALLTIIFGVIGAVAY 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 173 TQTRKILAFSSISHLGWMTI-ILMYNPK-LTLITFYLYCLMTIP--IFLTLNTI----KTLKLTTMSTAWTKIPPLTATL 244
Cdd:PRK07691 297 FDIKKIIIYNIMIAVGVILVgVAMMTESgMIGAIYYLIHDMIVKaaLFLLIGIMikitGTTDLKKMGGLIKRYPVLGWMF 376

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 301323141 245 MLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIALLSLLGLFFYLRL 296
Cdd:PRK07691 377 FIAALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLLVLYSVIKI 428
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
53-298 2.26e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 39.55  E-value: 2.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  53 IEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQL-----------THPMSCLLLTTAISIKLGLVPFhFWFPEV--- 118
Cdd:PRK12663 157 LRGAIKYVVLNLIGSWLFLLGIGLLYGTFGTLNMAHIamrlndmgdtaTLTTIALLFLLAFGMKAALFPF-MWLPAAyht 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 119 --LQGTSLMTGLLL---ATALkFPPTSLFLLTSPSLNPTMLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTII 193
Cdd:PRK12663 236 pnTEVAALFAALLTkvgIYAL-IRVFTLLFPQERELLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLG 314

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 194 LMYNPKLTL--ITFYLYCLMTIP--IFLTLNTIKTL----KLTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWL 265
Cdd:PRK12663 315 LALGTPAGIngAIFYLVHDMVVKtaLFLIAGSLVRLtgyrSLQYLGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVL 394

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 301323141 266 IIQ-ELTKQEMTPTATIIA--LLSLLGLFFYLRLAY 298
Cdd:PRK12663 395 LVQgALDNGAYILLALMLItsLITMYSLFRIFFLAY 430
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 104-284 2.56e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 39.41  E-value: 2.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 104 IKLGLVPFHFWFPEVLQG----TSLMTGLLLATALKFPPTSLFLLTSPSLNPTM-------LTLMAIASTALGGWAGLNQ 172
Cdd:PRK06589 222 AKTAIFPVHSWLPAAMVAhypvSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRifaefnwLIFIPIVSIFYSSLKALKT 301

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 173 TQTRKILAFSSISHLGW--MTIILMYNPKLTLITFYLYC--LMTIPIFLTLNTIKTLK----LTTMSTAWTKIPPLTATL 244
Cdd:PRK06589 302 DNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSIYSLKkedqVDKLHGTSKSFPLISFII 381

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 301323141 245 MLMLLSLAGLPPLTGFLPKWLIIQELTKQEMTPTATIIAL 284
Cdd:PRK06589 382 SISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSIIVML 421
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-190 3.17e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 39.24  E-value: 3.17e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  52 AIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQLTHPMSCLLLTTAISIKLGLV----------------PFHFWF 115
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 116 PEVLQGTSLMTGLLLA----TALKFPPTSLFLLTSPSlnPTMLTLMAI--ASTA-LGGWAGLNQTQTRKILAFSSISHLG 188
Cdd:PRK07376 251 PDAMEGPTPISALIHAatmvAAGVFLVARMYPVFEQF--PAVMTVIAWtgAITAfLGASIALTQNDIKKGLAYSTISQLG 328


                 ..
gi 301323141 189 WM 190
Cdd:PRK07376 329 YM 330
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 82-268 3.67e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 38.98  E-value: 3.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  82 GQWDITQLTHPMSCLLLTTAISI----KLGLVPFHFWFPEVLQGTSLMTGLL----LATALKFPPTSLF-LLTSPSLNPT 152
Cdd:MTH00207 165 GHWSITNMWQTDMNNYIALSIMIaamtKSAQMPFSSWLPAAMAAPTPVSALVhsstLVTAGVFLLIRFYpFLSSTYWFNP 244

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141 153 MLTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWMTIIL-MYNPKLTLITFYLYCLMTIPIFLTLNTI-----KTLK 226
Cdd:MTH00207 245 ALLLTASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLgLGMPKLALFHLITHALFKALLFVCAGSLihshhHSQD 324

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 301323141 227 LTTMSTAWTKIPPLTATLMLMLLSLAGLPPLTGFLPKWLIIQ 268
Cdd:MTH00207 325 LRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILE 366
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-190 8.79e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 37.76  E-value: 8.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  18 TITISSNHW---MMAWA--GLEINTLailpLISKSHHPRAIEAATKYFLVQATASALLLFSSTTNAWCTGQWDITQL--- 89
Cdd:PRK08168 114 HLLVLSDHLlvlIAAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 301323141  90 --THPMS------CLLLTTAISIKLGLVPFHFWFPEVLQGTSLMTGLLLA--------TALKFPPtslfLLTSPSLNPTM 153
Cdd:PRK08168 190 laAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAP----LLEQAPPARWL 265

                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 301323141 154 LTLMAIASTALGGWAGLNQTQTRKILAFSSISHLGWM 190
Cdd:PRK08168 266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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