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Conserved domains on  [gi|299829155|ref|YP_003735166|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Spilonota lechriaspis]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 2-175 1.18e-27

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 101.42  E-value: 1.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829155   2 KFFLSIYMMMISFMMFFLNHPLSMGFMILLQTILICLLSGMIINTYWFSYILFLTFLGGLLVLFIYVSSIASNELFTNNS 81
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829155  82 FFMKMFMFIFLLICIFSWFFyfnlnwinfsfndeMNNFFINNLFYNNENKINLSKLYNNQTFLMMMLMIIYLFITLIAVV 161
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKN--------------SEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVV 146

                        170
                 ....*....|....
gi 299829155 162 KITNIFFGPLRSSI 175
Cdd:MTH00166 147 KITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 2-175 1.18e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 101.42  E-value: 1.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829155   2 KFFLSIYMMMISFMMFFLNHPLSMGFMILLQTILICLLSGMIINTYWFSYILFLTFLGGLLVLFIYVSSIASNELFTNNS 81
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829155  82 FFMKMFMFIFLLICIFSWFFyfnlnwinfsfndeMNNFFINNLFYNNENKINLSKLYNNQTFLMMMLMIIYLFITLIAVV 161
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKN--------------SEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVV 146

                        170
                 ....*....|....
gi 299829155 162 KITNIFFGPLRSSI 175
Cdd:MTH00166 147 KITNIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 2-175 1.18e-27

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 101.42  E-value: 1.18e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829155   2 KFFLSIYMMMISFMMFFLNHPLSMGFMILLQTILICLLSGMIINTYWFSYILFLTFLGGLLVLFIYVSSIASNELFTNNS 81
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829155  82 FFMKMFMFIFLLICIFSWFFyfnlnwinfsfndeMNNFFINNLFYNNENKINLSKLYNNQTFLMMMLMIIYLFITLIAVV 161
Cdd:MTH00166  81 KLLILFLLMLLLMLNNFIKN--------------SEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVV 146

                        170
                 ....*....|....
gi 299829155 162 KITNIFFGPLRSSI 175
Cdd:MTH00166 147 KITNIFKGPLRSKN 160
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 21-172 5.41e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 46.92  E-value: 5.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829155  21 HPLSMGFMILLQTILICLLSGMIINTyWFSYILFLTFLGGLLVLFIYVSSIASNELFTNNsffmkmfmfifllicIFSWF 100
Cdd:MTH00212  22 HPLTLGVSLLLSSLLSCLIITMESNS-WYGYILFLIYIGGLLVLFGYMVALSPNEHLFFK---------------KYFKG 85

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 299829155 101 FYFNLNWINFSFNDEMNNFFINNLFYNNENKINLSKLYNNQTFLMMMLMIIYLFITLIAVVKITNIFFGPLR 172
Cdd:MTH00212  86 FGMILISLNLYLLLMTLGSSNFSPMLNLKLELNVSKILSNNNIPILLFLGLILLIALLMVVKICQYYKGPLR 157
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 3-172 2.27e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 45.26  E-value: 2.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829155   3 FFLSIYMMMISFMMFFLNHPLSMGFMILLQTILICLLSGMIINtYWFSYILFLTFLGGLLVLFIYVSSIASNELFTNNsf 82
Cdd:MTH00152   4 MILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIGLTLS-SWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGSN-- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829155  83 fmkmfmfIFLLICIFSWFFYFNLNWINFSFNDEMNNFFINNLFYNNENKINLSKLYNNQTFLMMMLMIIYLFITLIAVVK 162
Cdd:MTH00152  81 -------FKFVFFSLTLFGFLGLFFFFLYLYSSGGLSLSSLFDGSSGSLSFGGGLYSSSGWSIFVFLAVLLLIVMVSVVK 153

                        170
                 ....*....|
gi 299829155 163 ITNIFFGPLR 172
Cdd:MTH00152 154 ICYYEEGSLR 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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