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Conserved domains on  [gi|299829097|ref|YP_003735112|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Hydrolagus lemures]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009581)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.20e-63

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 188.97  E-value: 1.20e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSN 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 299829097  81 QLPSPMLTLTAALLIITLLTIGLIYEWMQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.20e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 188.97  E-value: 1.20e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSN 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 299829097  81 QLPSPMLTLTAALLIITLLTIGLIYEWMQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 1.85e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 101.73  E-value: 1.85e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   19 VTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLpiPWSNQLPS-PMLTLTAALLIIT 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFRElGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 299829097   98 LLTIGLIYEWMQGGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-114 3.62e-26

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 94.03  E-value: 3.62e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   4 IILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLpiPWSNQLP 83
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 299829097  84 S-PMLTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:COG0838   86 ElGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-116 1.20e-63

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 188.97  E-value: 1.20e-63
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSN 80
Cdd:MTH00136   1 MNLITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 299829097  81 QLPSPMLTLTAALLIITLLTIGLIYEWMQGGLEWAE 116
Cdd:MTH00136  81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-116 1.24e-56

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 170.95  E-value: 1.24e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   3 LIILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSNQL 82
Cdd:MTH00069   1 LIMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQL 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 299829097  83 PSPMLTLTAALLIITLLTIGLIYEWMQGGLEWAE 116
Cdd:MTH00069  81 NTPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 2-115 1.54e-53

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 163.13  E-value: 1.54e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   2 NLIILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSNQ 81
Cdd:MTH00113   1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 299829097  82 LPSPMLTLTAALLIITLLTIGLIYEWMQGGLEWA 115
Cdd:MTH00113  81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-116 3.63e-52

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 159.72  E-value: 3.63e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTvCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSN 80
Cdd:MTH00106   1 MNLMLTLLT-NTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAS 79

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 299829097  81 QLPSPMLTLTAALLIITLLTIGLIYEWMQGGLEWAE 116
Cdd:MTH00106  80 QTNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-116 6.45e-42

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 133.95  E-value: 6.45e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSN 80
Cdd:MTH00042   1 MTNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 299829097  81 QLPSPMLTLTAALLIITLLTIGLIYEWMQGGLEWAE 116
Cdd:MTH00042  81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 7.30e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 133.48  E-value: 7.30e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSN 80
Cdd:MTH00203   1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSN 80

                         90       100       110
                 ....*....|....*....|....*....|....
gi 299829097  81 QLPSPmlTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:MTH00203  81 QLSSL--SLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-116 1.71e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 109.95  E-value: 1.71e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTVCFTLSLILVTIAFW-MPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWS 79
Cdd:MTH00148   1 MLSILLSLLFALILSPVLLLLGLVlSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 299829097  80 NQLPSPMLTLTAALLIITLLTIGLIYEWMQGGLEWAE 116
Cdd:MTH00148  81 LGSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 1.85e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 101.73  E-value: 1.85e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   19 VTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLpiPWSNQLPS-PMLTLTAALLIIT 97
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFRElGWFGFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 299829097   98 LLTIGLIYEWMQGGLE 113
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-114 2.04e-29

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 102.16  E-value: 2.04e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   3 LIILIFTVCFTLSLILVTIAFWM-PQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSNQ 81
Cdd:MTH00161   1 MILIILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                         90       100       110
                 ....*....|....*....|....*....|...
gi 299829097  82 LPSPMLTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:MTH00161  81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 5-115 1.85e-27

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 97.24  E-value: 1.85e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   5 ILIFT-VCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLlpIPWSNQLP 83
Cdd:PRK06602  11 FLIFLiVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFR 88

                         90       100       110
                 ....*....|....*....|....*....|...
gi 299829097  84 -SPMLTLTAALLIITLLTIGLIYEWMQGGLEWA 115
Cdd:PRK06602  89 eIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-114 3.42e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 94.01  E-value: 3.42e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   4 IILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLpiPWS---N 80
Cdd:MTH00055   8 IFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLF--PWCvvyN 85

                         90       100       110
                 ....*....|....*....|....*....|....
gi 299829097  81 QLpsPMLTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:MTH00055  86 QI--GLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-114 3.62e-26

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 94.03  E-value: 3.62e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   4 IILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLpiPWSNQLP 83
Cdd:COG0838    8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWAVVFR 85

                         90       100       110
                 ....*....|....*....|....*....|..
gi 299829097  84 S-PMLTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:COG0838   86 ElGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-116 6.09e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 93.52  E-value: 6.09e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTVCFTLSLILVTIAFWMP-QFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWS 79
Cdd:MTH00202   1 MLLILFMSILSILISSLLFLVSWMLSfRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 299829097  80 NQLPSPMLTLTAALLIITLLTIGLIYEWMQGGLEWAE 116
Cdd:MTH00202  81 LKSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDWVK 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 3-114 8.33e-24

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 87.81  E-value: 8.33e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   3 LIILIFTvcFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSNQL 82
Cdd:MTH00018   4 FILLIFS--VVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQ 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 299829097  83 PSPMLTLTAALLIItLLTIGLIYEWMQGGLEW 114
Cdd:MTH00018  82 IAPFGFWTMVGFLF-ILTLGLIYEWIKGGLEW 112
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-115 1.63e-23

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 87.22  E-value: 1.63e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTVCFTLSLILVTIAFWMP-QFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWS 79
Cdd:MTH00012   1 MSLMMIPMMISLILPPLVLGAAWVLAaRSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 299829097  80 NQLPSPMLTLTAALLIITLLTIGLIYEWMQGGLEWA 115
Cdd:MTH00012  81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 16-114 2.49e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 74.20  E-value: 2.49e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097  16 LILVTIAFWMPQ-----FKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLpiPWS---NQLPSPML 87
Cdd:MTH00030  20 LLLVSISFTLGNsriglTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLF--PWSivfNQLNLFSF 97

                         90       100
                 ....*....|....*....|....*..
gi 299829097  88 TLTAALLIItlLTIGLIYEWMQGGLEW 114
Cdd:MTH00030  98 WIVYTFLIV--LAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 34-114 6.05e-12

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 57.76  E-value: 6.05e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097  34 KLSPYECGFDPLGSARLP--FSLRFFLVAILFLLFDLEIALLlpIPWSNQLPS-PMLTLTAALLIITLLTIGLIYEWMQG 110
Cdd:PRK07928  37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFL--YPWAVSFDAlGVFGLVEMALFMLTVFVAYAYVWRRG 114


                 ....
gi 299829097 111 GLEW 114
Cdd:PRK07928 115 GLEW 118
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
3-114 9.63e-12

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 57.06  E-value: 9.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   3 LIILIFTVC-FTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLpiPWS-- 79
Cdd:PRK07756  10 MIVLIFLLLgILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLY--PWAva 87

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 299829097  80 -NQLpsPMLTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:PRK07756  88 yDKL--GLFALIEMLIFVVMLLVGLAYAWKKKVLQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 7-114 1.30e-11

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 56.92  E-value: 1.30e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   7 IFTVCFTLSLILVTIAFWMPQF-KPDG---EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWS-NQ 81
Cdd:CHL00022   9 IFWAFLIISSLIPILAFLISGLlAPISkgpEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSfDV 88

                         90       100       110
                 ....*....|....*....|....*....|...
gi 299829097  82 LpsPMLTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:CHL00022  89 L--GVSAFIEALIFVLILIVGLVYAWRKGALEW 119
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
3-114 9.72e-11

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 54.67  E-value: 9.72e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   3 LIILIFTVCFTLSLILVT-IAFWMPQFKPDGEKLSPYECGFDPLGSARlPFSLRFFLVAILFLLFDLEIALLLPIPWSNQ 81
Cdd:PRK08489  15 VLLVLTFVAFFLTTRLARfISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFMFPWAVDFK 93

                         90       100       110
                 ....*....|....*....|....*....|...
gi 299829097  82 LPSpMLTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:PRK08489  94 LLG-LFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-114 1.80e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 45.66  E-value: 1.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   1 MNLIILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIpwsn 80
Cdd:MTH00092   1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFLGL---- 76

                         90       100       110
                 ....*....|....*....|....*....|....
gi 299829097  81 qLPSPMLTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:MTH00092  77 -LVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIW 109
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 36-114 7.81e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 39.11  E-value: 7.81e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 299829097  36 SPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIPWSNQLPSpmlTLTAALLIITLLTIGLIYEWMQGGLEW 114
Cdd:MTH00060  39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMPFQGLLFY---NFWYYYFFLLLLFLGFVVELFSGYVRW 114
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 2-98 4.85e-04

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 36.89  E-value: 4.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 299829097   2 NLIILIFTVCFTLSLILVTIAFWMPQFKPDGEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPIP-WSN 80
Cdd:PRK06073   8 LAFGLVIVLGLAAGVGTYKLLKLILPSKPTPLKVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAfAPY 87

                         90
                 ....*....|....*...
gi 299829097  81 QLPSPMLTLTAALLIITL 98
Cdd:PRK06073  88 YTFRDLLLLIVVALVLMY 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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