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Conserved domains on  [gi|29893239|gb|AAP06800|]
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developmentally regulated protein TPO1 [Homo sapiens]

Protein Classification

serine incorporator domain-containing protein( domain architecture ID 10505724)

serine incorporator domain-containing protein similar to Homo sapiens serine incorporators that may incorporate serine into membranes and facilitate the synthesis of serine-derived lipids such as phosphatidylserine, and to Saccharomyces cerevisiae membrane protein TMS1

Gene Ontology:  GO:0016020
PubMed:  16120614|31907454

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Serinc pfam03348
Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which ...
 11-413 2.88e-176

Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis.


:

Pssm-ID: 460891  Cd Length: 434  Bit Score: 499.01  E-value: 2.88e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239    11 ACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHIPFFEDmCKGIKAGDTCEklvGYSA 90
Cdd:pfam03348   1 ACCCGSAACSLCCSCCPSCKSSTSTRLAYALLLLLNSLVSWIMLSPWVQKKLKKLSLKWPG-CPGGKGGGECY---GYSA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239    91 VYRVCFGMACFFFIFCLLTLKINNSKSCRAHIHNGFWFFKLLLLGAMCSGAFFIPDQdtFLNAWRYVGAVGGFLFIGIQL 170
Cdd:pfam03348  77 VYRVCFALALFFLLLALLLIGVKSSKDPRAAIQNGFWFFKFLALLGLVVGAFFIPNG--FFTFWGYIGLIGGFLFILIQL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239   171 LLLVEFAHKWNKNWTAGTA--SNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDsCMENKILLGVNGGLCLLISLVAI 248
Cdd:pfam03348 155 ILLVDFAHSWNESWVEKYEetNSKLWYAALLGSTLLMYALAIALTVLMYIFFTGSG-CGLNKFFISINLILCVIVSVVSI 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239   249 SPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKPAevvlDEHgknvtiCVPDFGQDlYRDENLVTILGTSLLIGCILYS 328
Cdd:pfam03348 234 LPKVQEANPRSGLLQSSVVSLYCTYLTWSALSSEPD----DKN------CNPLLRSS-EGTRTASVVLGAIFTFLCVAYS 302

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239   329 CLTSTTRSSSDALQGRYAAPELEIARCCFCFSPGGED---TEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFFLASLYVM 405
Cdd:pfam03348 303 TTRAASNSAVLGLQGSGTTQEGSRDSLRFEALRAAVEegsLPASALDDDGGKVLDDEKEGVAYSYSFFHFIFFLASLYVA 382


                  ....*...
gi 29893239   406 MTVTNWFN 413
Cdd:pfam03348 383 MLLTNWYS 390
 
Name Accession Description Interval E-value
Serinc pfam03348
Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which ...
 11-413 2.88e-176

Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis.


Pssm-ID: 460891  Cd Length: 434  Bit Score: 499.01  E-value: 2.88e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239    11 ACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHIPFFEDmCKGIKAGDTCEklvGYSA 90
Cdd:pfam03348   1 ACCCGSAACSLCCSCCPSCKSSTSTRLAYALLLLLNSLVSWIMLSPWVQKKLKKLSLKWPG-CPGGKGGGECY---GYSA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239    91 VYRVCFGMACFFFIFCLLTLKINNSKSCRAHIHNGFWFFKLLLLGAMCSGAFFIPDQdtFLNAWRYVGAVGGFLFIGIQL 170
Cdd:pfam03348  77 VYRVCFALALFFLLLALLLIGVKSSKDPRAAIQNGFWFFKFLALLGLVVGAFFIPNG--FFTFWGYIGLIGGFLFILIQL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239   171 LLLVEFAHKWNKNWTAGTA--SNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDsCMENKILLGVNGGLCLLISLVAI 248
Cdd:pfam03348 155 ILLVDFAHSWNESWVEKYEetNSKLWYAALLGSTLLMYALAIALTVLMYIFFTGSG-CGLNKFFISINLILCVIVSVVSI 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239   249 SPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKPAevvlDEHgknvtiCVPDFGQDlYRDENLVTILGTSLLIGCILYS 328
Cdd:pfam03348 234 LPKVQEANPRSGLLQSSVVSLYCTYLTWSALSSEPD----DKN------CNPLLRSS-EGTRTASVVLGAIFTFLCVAYS 302

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239   329 CLTSTTRSSSDALQGRYAAPELEIARCCFCFSPGGED---TEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFFLASLYVM 405
Cdd:pfam03348 303 TTRAASNSAVLGLQGSGTTQEGSRDSLRFEALRAAVEegsLPASALDDDGGKVLDDEKEGVAYSYSFFHFIFFLASLYVA 382


                  ....*...
gi 29893239   406 MTVTNWFN 413
Cdd:pfam03348 383 MLLTNWYS 390
 
Name Accession Description Interval E-value
Serinc pfam03348
Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which ...
 11-413 2.88e-176

Serine incorporator (Serinc); This is a family of eukaryotic membrane proteins which incorporate serine into membranes and facilitate the synthesis of the serine-derived lipids phosphatidylserine and sphingolipid. Members of this family contain 11 transmembrane domains and form intracellular complexes with key enzymes involved in serine and sphingolipid biosynthesis.


Pssm-ID: 460891  Cd Length: 434  Bit Score: 499.01  E-value: 2.88e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239    11 ACCCGSAGCSLCCDCCPRIRQSLSTRFMYALYFILVVVLCCIMMSTTVAHKMKEHIPFFEDmCKGIKAGDTCEklvGYSA 90
Cdd:pfam03348   1 ACCCGSAACSLCCSCCPSCKSSTSTRLAYALLLLLNSLVSWIMLSPWVQKKLKKLSLKWPG-CPGGKGGGECY---GYSA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239    91 VYRVCFGMACFFFIFCLLTLKINNSKSCRAHIHNGFWFFKLLLLGAMCSGAFFIPDQdtFLNAWRYVGAVGGFLFIGIQL 170
Cdd:pfam03348  77 VYRVCFALALFFLLLALLLIGVKSSKDPRAAIQNGFWFFKFLALLGLVVGAFFIPNG--FFTFWGYIGLIGGFLFILIQL 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239   171 LLLVEFAHKWNKNWTAGTA--SNKLWYASLALVTLIMYSIATGGLVLMAVFYTQKDsCMENKILLGVNGGLCLLISLVAI 248
Cdd:pfam03348 155 ILLVDFAHSWNESWVEKYEetNSKLWYAALLGSTLLMYALAIALTVLMYIFFTGSG-CGLNKFFISINLILCVIVSVVSI 233

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239   249 SPWVQNRQPHSGLLQSGVISCYVTYLTFSALSSKPAevvlDEHgknvtiCVPDFGQDlYRDENLVTILGTSLLIGCILYS 328
Cdd:pfam03348 234 LPKVQEANPRSGLLQSSVVSLYCTYLTWSALSSEPD----DKN------CNPLLRSS-EGTRTASVVLGAIFTFLCVAYS 302

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 29893239   329 CLTSTTRSSSDALQGRYAAPELEIARCCFCFSPGGED---TEEQQPGKEGPRVIYDEKKGTVYIYSYFHFVFFLASLYVM 405
Cdd:pfam03348 303 TTRAASNSAVLGLQGSGTTQEGSRDSLRFEALRAAVEegsLPASALDDDGGKVLDDEKEGVAYSYSFFHFIFFLASLYVA 382


                  ....*...
gi 29893239   406 MTVTNWFN 413
Cdd:pfam03348 383 MLLTNWYS 390
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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