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Conserved domains on  [gi|298161524|gb|ADI59083|]
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nonstructural protein 2, partial [Equine arteritis virus]

Protein Classification

Peptidase_C33 and Nsp2_AV domain-containing protein( domain architecture ID 11650303)

Peptidase_C33 and Nsp2_AV domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Nsp2_AV pfam14755
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ...
 101-253 1.18e-93

Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.


:

Pssm-ID: 373271 [Multi-domain]  Cd Length: 148  Bit Score: 283.41  E-value: 1.18e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  101 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAP 180
Cdd:pfam14755   1 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASSSGDVKDPATVPPVPKPRTKLAKPSPTQAPTPAP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 298161524  181 RTQPQDAvhsglPKPEPPTGTAAAPASAPRWRVAKTVYSSAERIRTELIHRAQSIGDSLVQALPLKAPAVQRY 253
Cdd:pfam14755  81 RTRLQDA-----SKQEPPVGTAAAPASAPKWRVAKTVYSSAERIRTELVQRARSIGDVLVQALPLKTPAVQRY 148
Peptidase_C33 super family cl05135
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These ...
 1-97 1.10e-13

Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These peptidases are involved in viral polyprotein processing in replication.


The actual alignment was detected with superfamily member pfam05412:

Pssm-ID: 114153  Cd Length: 108  Bit Score: 67.25  E-value: 1.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524    1 GYNPPGDGACGYRCLAFMNGATAVSAGCS--------SDLWCDDELAYRVFQLSpTFTVTIPGGRVCPNARYVMICDKQH 72
Cdd:pfam05412   1 GYSPPGDGACGWHCISAIANRMFNDKFTTtltecsrpSDDWASDQDLVQAIQTL-RLPATLDRNGACPSAKYKLKLVGQH 79

                          90       100
                  ....*....|....*....|....*.
gi 298161524   73 WRVKRAKGVGL-CLDEKCFRGTCDCQ 97
Cdd:pfam05412  80 WTVTVRKGMAPgLLSPECVRGVCGHE 105
 
Name Accession Description Interval E-value
Nsp2_AV pfam14755
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ...
 101-253 1.18e-93

Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.


Pssm-ID: 373271 [Multi-domain]  Cd Length: 148  Bit Score: 283.41  E-value: 1.18e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  101 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAP 180
Cdd:pfam14755   1 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASSSGDVKDPATVPPVPKPRTKLAKPSPTQAPTPAP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 298161524  181 RTQPQDAvhsglPKPEPPTGTAAAPASAPRWRVAKTVYSSAERIRTELIHRAQSIGDSLVQALPLKAPAVQRY 253
Cdd:pfam14755  81 RTRLQDA-----SKQEPPVGTAAAPASAPKWRVAKTVYSSAERIRTELVQRARSIGDVLVQALPLKTPAVQRY 148
Peptidase_C33 pfam05412
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These ...
 1-97 1.10e-13

Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These peptidases are involved in viral polyprotein processing in replication.


Pssm-ID: 114153  Cd Length: 108  Bit Score: 67.25  E-value: 1.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524    1 GYNPPGDGACGYRCLAFMNGATAVSAGCS--------SDLWCDDELAYRVFQLSpTFTVTIPGGRVCPNARYVMICDKQH 72
Cdd:pfam05412   1 GYSPPGDGACGWHCISAIANRMFNDKFTTtltecsrpSDDWASDQDLVQAIQTL-RLPATLDRNGACPSAKYKLKLVGQH 79

                          90       100
                  ....*....|....*....|....*.
gi 298161524   73 WRVKRAKGVGL-CLDEKCFRGTCDCQ 97
Cdd:pfam05412  80 WTVTVRKGMAPgLLSPECVRGVCGHE 105
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 98-209 4.47e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 4.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  98 RRSGPPPAPVSASvldhilEAATFGNVRVVATEEQQRPVPAPRARHSvsPPGDVKDTATVPPVPKPRTKLAKPSPVQAPT 177
Cdd:PRK07764 400 SAAAAAPAAAPAP------AAAAPAAAAAPAPAAAPQPAPAPAPAPA--PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

                         90       100       110
                 ....*....|....*....|....*....|..
gi 298161524 178 PAPRTQPQDAVhSGLPKPEPPTGTAAAPASAP 209
Cdd:PRK07764 472 AAPEPTAAPAP-APPAAPAPAAAPAAPAAPAA 502
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 106-216 4.58e-04

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 43.14  E-value: 4.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  106 PVSASVldhileAATFGNVRVVATEE-QQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTpAPRTQP 184
Cdd:TIGR01645 298 PAAAAV------AAAAATAKIMAAEAvAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQA-APAVVK 370

                          90       100       110
                  ....*....|....*....|....*....|..
gi 298161524  185 qDAVHSGlPKPEPPTGTAAAPASAPRWRVAKT 216
Cdd:TIGR01645 371 -PGPMEI-PTPVPPPGLAIPSLVAPPGLVAPT 400
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 127-226 4.18e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.83  E-value: 4.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 127 VATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPrTQPQDAVHSGLPKPEPPTGTAAAPA 206
Cdd:COG3266  271 SLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTA-AKPVVTETAAPAAPAPEAAAAAAAP 349

                         90       100
                 ....*....|....*....|
gi 298161524 207 SAPrwRVAKTVYSSAERIRT 226
Cdd:COG3266  350 AAP--AVAKKLAADEQWLAS 367
 
Name Accession Description Interval E-value
Nsp2_AV pfam14755
Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, ...
 101-253 1.18e-93

Nsp2, transmembrane domain; This domain is found in Nsp2 protein of the RNA-arteriviruses, such as porcine arterivirus PRRSV and equine arterivirus EAV, which is a tetraspanning transmembrane protein. This domain resides adjacent to the peptidase C33 catalytic domain of Nsp2.


Pssm-ID: 373271 [Multi-domain]  Cd Length: 148  Bit Score: 283.41  E-value: 1.18e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  101 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAP 180
Cdd:pfam14755   1 GPPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPRTRPSASSSGDVKDPATVPPVPKPRTKLAKPSPTQAPTPAP 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 298161524  181 RTQPQDAvhsglPKPEPPTGTAAAPASAPRWRVAKTVYSSAERIRTELIHRAQSIGDSLVQALPLKAPAVQRY 253
Cdd:pfam14755  81 RTRLQDA-----SKQEPPVGTAAAPASAPKWRVAKTVYSSAERIRTELVQRARSIGDVLVQALPLKTPAVQRY 148
Peptidase_C33 pfam05412
Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These ...
 1-97 1.10e-13

Equine arterivirus Nsp2-type cysteine proteinase; Corresponds to Merops family C33. These peptidases are involved in viral polyprotein processing in replication.


Pssm-ID: 114153  Cd Length: 108  Bit Score: 67.25  E-value: 1.10e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524    1 GYNPPGDGACGYRCLAFMNGATAVSAGCS--------SDLWCDDELAYRVFQLSpTFTVTIPGGRVCPNARYVMICDKQH 72
Cdd:pfam05412   1 GYSPPGDGACGWHCISAIANRMFNDKFTTtltecsrpSDDWASDQDLVQAIQTL-RLPATLDRNGACPSAKYKLKLVGQH 79

                          90       100
                  ....*....|....*....|....*.
gi 298161524   73 WRVKRAKGVGL-CLDEKCFRGTCDCQ 97
Cdd:pfam05412  80 WTVTVRKGMAPgLLSPECVRGVCGHE 105
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 98-209 4.47e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 4.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  98 RRSGPPPAPVSASvldhilEAATFGNVRVVATEEQQRPVPAPRARHSvsPPGDVKDTATVPPVPKPRTKLAKPSPVQAPT 177
Cdd:PRK07764 400 SAAAAAPAAAPAP------AAAAPAAAAAPAPAAAPQPAPAPAPAPA--PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

                         90       100       110
                 ....*....|....*....|....*....|..
gi 298161524 178 PAPRTQPQDAVhSGLPKPEPPTGTAAAPASAP 209
Cdd:PRK07764 472 AAPEPTAAPAP-APPAAPAPAAAPAAPAAPAA 502
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 102-212 9.68e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 45.12  E-value: 9.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 102 PPPAPVSASV--LDHILEAATFGNVRVVATEEQQRPVPAPRARhsvsppgdvkdTATVPPVPKPRTKLAKPSPVQAPTPA 179
Cdd:PRK14965 362 APGAPVSELLdrLEALERGAPAPPSAAWGAPTPAAPAAPPPAA-----------APPVPPAAPARPAAARPAPAPAPPAA 430

                         90       100       110
                 ....*....|....*....|....*....|...
gi 298161524 180 PrtqpqdavhsglPKPEPPTGTAAAPASAPRWR 212
Cdd:PRK14965 431 A------------APPARSADPAAAASAGDRWR 451
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 106-251 1.38e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.71  E-value: 1.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 106 PVSASVLDHILEAATfgnvrvVATEEQQRPVPAPRARHSVS------PPGDVKDTATVP----PVPKPRTKLAKPSPVQA 175
Cdd:PRK14951 366 PAAAAEAAAPAEKKT------PARPEAAAPAAAPVAQAAAApapaaaPAAAASAPAAPPaaapPAPVAAPAAAAPAAAPA 439

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 298161524 176 PTPAPRTQPQDAVHSGLPKPE-PPTGTAAAPASAPRWRVAKTVYSSAERIRTELIHRAQSIGDSLVQALPLKAPAVQ 251
Cdd:PRK14951 440 AAPAAVALAPAPPAQAAPETVaIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEGDVWHATVQQLAAAEAITALARE 516
PHA03378 PHA03378
EBNA-3B; Provisional
 98-209 2.04e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 44.29  E-value: 2.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  98 RRSGPPPAPVSASVLDHILEAATFGNVRVVATEEQ-QRPVPAP-RARHSVSPPGDVKDTATVP-PVPKPRTKLAKPSPVQ 174
Cdd:PHA03378 699 RAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRaRPPAAAPgRARPPAAAPGRARPPAAAPgRARPPAAAPGAPTPQP 778

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 298161524 175 APT--PAPRTQPQDAVHSGLPKPEPPTGTAAAPASAP 209
Cdd:PHA03378 779 PPQapPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP 815
PRK11633 PRK11633
cell division protein DedD; Provisional
 128-209 2.13e-04

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 43.07  E-value: 2.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 128 ATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPrtklaKPSPVQAPTPAPRTQPQDAVHsglPKPEPPTGTAAAPAS 207
Cdd:PRK11633  72 AEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPP-----KPKPVEKPKPKPKPQQKVEAP---PAPKPEPKPVVEEKA 143


                 ..
gi 298161524 208 AP 209
Cdd:PRK11633 144 AP 145
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
102-211 2.52e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 2.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 102 PPPAPVSASVLDHILEAATfgnvrvvATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPrtklAKPSPVQAPTPAPR 181
Cdd:PRK12323 406 PAAAPAAAAAARAVAAAPA-------RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAA----AARPAAAGPRPVAA 474

                         90       100       110
                 ....*....|....*....|....*....|
gi 298161524 182 TQPQDAvhsglPKPEPPTGTAAAPASAPRW 211
Cdd:PRK12323 475 AAAAAP-----ARAAPAAAPAPADDDPPPW 499
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 102-222 3.46e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 43.32  E-value: 3.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 102 PPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPAPrARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPR 181
Cdd:PRK07994 374 SAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAP-AVPLPETTSQLLAARQQLQRAQGATKAKKSEPAAASRARPV 452

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 298161524 182 TQPQDAVHSGLPKPEPPTgTAAAPASAPRWRVAKTVYSSAE 222
Cdd:PRK07994 453 NSALERLASVRPAPSALE-KAPAKKEAYRWKATNPVEVKKE 492
PHA03247 PHA03247
large tegument protein UL36; Provisional
 119-214 3.84e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 3.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  119 ATFGNVRVVATEEQQRPVPAPRARHSVS----PPGDVKDTATVPPVPKprTKLAKPSPVQAPTPA-PRTQPQDAVHSGLP 193
Cdd:PHA03247 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSatplPPGPAAARQASPALPA--APAPPAVPAGPATPGgPARPARPPTTAGPP 2767

                          90       100
                  ....*....|....*....|..
gi 298161524  194 KPEPPTGTAAAPA-SAPRWRVA 214
Cdd:PHA03247 2768 APAPPAAPAAGPPrRLTRPAVA 2789
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 106-216 4.58e-04

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 43.14  E-value: 4.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  106 PVSASVldhileAATFGNVRVVATEE-QQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTpAPRTQP 184
Cdd:TIGR01645 298 PAAAAV------AAAAATAKIMAAEAvAGAAVLGPRAQSPATPSSSLPTDIGNKAVVSSAKKEAEEVPPLPQA-APAVVK 370

                          90       100       110
                  ....*....|....*....|....*....|..
gi 298161524  185 qDAVHSGlPKPEPPTGTAAAPASAPRWRVAKT 216
Cdd:TIGR01645 371 -PGPMEI-PTPVPPPGLAIPSLVAPPGLVAPT 400
PHA03247 PHA03247
large tegument protein UL36; Provisional
 102-209 7.92e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 7.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  102 PPPAPVSASVLDHILEAATFGNVRVVATEEQQRPVPA----PRARHSVSP-----------PGDVKDTATVPPVPKPRTK 166
Cdd:PHA03247 2840 PPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAaparPPVRRLARPavsrstesfalPPDQPERPPQPQAPPPPQP 2919

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 298161524  167 LAKPSPVQAPTPAPRTQPQDAvhsglPKPEPPTGTAAAPASAP 209
Cdd:PHA03247 2920 QPQPPPPPQPQPPPPPPPRPQ-----PPLAPTTDPAGAGEPSG 2957
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 128-223 9.30e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.02  E-value: 9.30e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 128 ATEEQQRPVPAPRARHSVSPpgdvkDTATVPPVPKPRtklaKPSPVQAPTPAPRTQPQDAVHS---GLPKPEPPTGTAAA 204
Cdd:PHA03269  35 AATQKPDPAPAPHQAASRAP-----DPAVAPTSAASR----KPDLAQAPTPAASEKFDPAPAPhqaASRAPDPAVAPQLA 105

                         90
                 ....*....|....*....
gi 298161524 205 PASAPRWRVAKTvySSAER 223
Cdd:PHA03269 106 AAPKPDAAEAFT--SAAQA 122
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 133-214 9.48e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.16  E-value: 9.48e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 133 QRPVPAPRARHSVSPPGDVKDTATVP--PVPKPRTKLAKPSPVQAPTPAPRTQPQDAV---------------HSGLPKP 195
Cdd:PRK07994 362 AAPLPEPEVPPQSAAPAASAQATAAPtaAVAPPQAPAVPPPPASAPQQAPAVPLPETTsqllaarqqlqraqgATKAKKS 441

                         90
                 ....*....|....*....
gi 298161524 196 EPPTGTAAAPASAPRWRVA 214
Cdd:PRK07994 442 EPAAASRARPVNSALERLA 460
PHA03378 PHA03378
EBNA-3B; Provisional
 135-210 1.55e-03

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 41.59  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 135 PVPA--PRARHSVSPPGDVKDTATVPPVPKP---RTKLAKPSPVQAPTPAPRTQPQDAVHSGLPKPEPPTGTAAAPASAP 209
Cdd:PHA03378 711 PGRAqrPAAATGRARPPAAAPGRARPPAAAPgraRPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP 790


                 .
gi 298161524 210 R 210
Cdd:PHA03378 791 R 791
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 110-251 1.67e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 41.33  E-value: 1.67e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 110 SVLDHILEAATFGN----VRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPRTQPQ 185
Cdd:PRK14950 335 SQLDFQLRTTSYGQlpleLAVIEALLVPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP 414

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 298161524 186 DAVHSGLP--KPEPPTGT-AAAPASAPRWRVAKTVYSSAERIRTE---LIHRAQSIGDSLVQALPLKAPAVQ 251
Cdd:PRK14950 415 RPVAPPVPhtPESAPKLTrAAIPVDEKPKYTPPAPPKEEEKALIAdgdVLEQLEAIWKQILRDVPPRSPAVQ 486
PRK11901 PRK11901
hypothetical protein; Reviewed
 129-221 1.92e-03

hypothetical protein; Reviewed


Pssm-ID: 237015 [Multi-domain]  Cd Length: 327  Bit Score: 40.82  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 129 TEEQQRPVPAPRARHSVSPPGDVKDT--------------------------ATVPPVPKPRTKLAKPSPVQAPTPAPRT 182
Cdd:PRK11901 127 TPTQAAPPQTPNGQQRIELPGNISDAlsqqqgqvnaasqnaqgntstlptapATVAPSKGAKVPATAETHPTPPQKPATK 206

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 298161524 183 QPQDAVHSGLPKPEPPTGTAAAPASAPrwrvAKTVYSSA 221
Cdd:PRK11901 207 KPAVNHHKTATVAVPPATSGKPKSGAA----SARALSSA 241
PRK14963 PRK14963
DNA polymerase III subunits gamma and tau; Provisional
 112-212 2.00e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184927 [Multi-domain]  Cd Length: 504  Bit Score: 40.98  E-value: 2.00e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 112 LDHILEAATFGNVRVVATEEQQRPVPAPRAR--HSVSPPGDVKDTATVPPVPkprtklAKPSPVQAPTPAPRTQPQDAVH 189
Cdd:PRK14963 335 LLHALLALGGAPSEGVAAVAPPAPAPADLTQrlNRLEKEVRSLRSAPTAAAT------AAGAPLPDFDPRPRGPPAPEPA 408

                         90       100
                 ....*....|....*....|...
gi 298161524 190 SGLPKPEPPTGTAAAPASAPRWR 212
Cdd:PRK14963 409 RSAEAPPLVAPAAAPAGLALRWR 431
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
98-216 2.89e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.63  E-value: 2.89e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  98 RRSGPPPAPVSASvldhiLEAATFGNVRVVATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPT 177
Cdd:PRK12323 424 ARRSPAPEALAAA-----RQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP 498

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 298161524 178 --------PAPRTQPQDAVHSGLPK-PEPPTGTAAAPASAPRWRVAKT 216
Cdd:PRK12323 499 weelppefASPAPAQPDAAPAGWVAeSIPDPATADPDDAFETLAPAPA 546
PHA03201 PHA03201
uracil DNA glycosylase; Provisional
 134-209 3.46e-03

uracil DNA glycosylase; Provisional


Pssm-ID: 165468  Cd Length: 318  Bit Score: 39.88  E-value: 3.46e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 298161524 134 RPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPRTQPQDAVHSGLPKPEPPTGTAAAPASAP 209
Cdd:PHA03201  13 RRPSPPRPTPPRSPDASPEETPPSPPGPGAEPPPGRAAGPAAPRRRPRGCPAGVTFSSSAPPRPPLGLDDAPAATP 88
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 132-211 3.63e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 3.63e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 132 QQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLA-KPSPVQAPTPAPRTQPQDAVHSGLPKPEPPTGTAAAPASAPR 210
Cdd:PRK07764 396 AAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPApAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPE 475


                 .
gi 298161524 211 W 211
Cdd:PRK07764 476 P 476
DamX COG3266
Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell ...
 127-226 4.18e-03

Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442497 [Multi-domain]  Cd Length: 455  Bit Score: 39.83  E-value: 4.18e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 127 VATEEQQRPVPAPRARHSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPrTQPQDAVHSGLPKPEPPTGTAAAPA 206
Cdd:COG3266  271 SLGEQQEVSLPPAVAAQPAAAAAAQPSAVALPAAPAAAAAAAAPAEAAAPQPTA-AKPVVTETAAPAAPAPEAAAAAAAP 349

                         90       100
                 ....*....|....*....|
gi 298161524 207 SAPrwRVAKTVYSSAERIRT 226
Cdd:COG3266  350 AAP--AVAKKLAADEQWLAS 367
PHA03247 PHA03247
large tegument protein UL36; Provisional
 103-209 4.53e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 4.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524  103 PPAPVSASVLDhileAATFGNVRVVATEEQQRPVPaPRARHSVSPPgdvkdTATVPPV----------PKPRTKLAKPSP 172
Cdd:PHA03247 2741 PPAVPAGPATP----GGPARPARPPTTAGPPAPAP-PAAPAAGPPR-----RLTRPAVaslsesreslPSPWDPADPPAA 2810

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 298161524  173 VQAPTPAPRTQPQDAvhSGLPKPEPPTGTAAAPASAP 209
Cdd:PHA03247 2811 VLAPAAALPPAASPA--GPLPPPTSAQPTAPPPPPGP 2845
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
132-209 6.68e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 6.68e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 298161524 132 QQRPVPAPRAR-------HSVSPPGDVKDTATVPPVPKPRTKLAKPSPVQAPTPAPRTQPQDAVHSGLPKPEPPTGTAAA 204
Cdd:PRK07003 376 VAGAVPAPGARaaaavgaSAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANA 455


                 ....*
gi 298161524 205 PASAP 209
Cdd:PRK07003 456 RASAD 460
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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