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Conserved domains on  [gi|296041018|gb|ADG85460|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Gomphocerus sibiricus tibetanus]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009599)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 5.09e-33

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214445  Cd Length: 160  Bit Score: 114.90  E-value: 5.09e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018   3 KMIIMALSNMMNINFIKLNHPMSMMMFIIIQTFIVGLITGTMMESFWLSYILFLTFLGGMLVLFIYITSIASNELFKPKS 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018  83 IIMVILMFMMIiitmiliivdkTMFLDPIKNTETMNINNSINYQEMSMSLEKLYNKPTLTTTMMMMIYLFLALVAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLL-----------LMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 296041018 163 NINQGPIRKMS 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 5.09e-33

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 114.90  E-value: 5.09e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018   3 KMIIMALSNMMNINFIKLNHPMSMMMFIIIQTFIVGLITGTMMESFWLSYILFLTFLGGMLVLFIYITSIASNELFKPKS 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018  83 IIMVILMFMMIiitmiliivdkTMFLDPIKNTETMNINNSINYQEMSMSLEKLYNKPTLTTTMMMMIYLFLALVAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLL-----------LMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 296041018 163 NINQGPIRKMS 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
 
Name Accession Description Interval E-value
ND6 MTH00166
NADH dehydrogenase subunit 6; Provisional
 3-173 5.09e-33

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214445  Cd Length: 160  Bit Score: 114.90  E-value: 5.09e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018   3 KMIIMALSNMMNINFIKLNHPMSMMMFIIIQTFIVGLITGTMMESFWLSYILFLTFLGGMLVLFIYITSIASNELFKPKS 82
Cdd:MTH00166   1 KMMLMMLLLILSIIFLFLNHPLSMGLILIIQTILISLLLGLMMKSFWFSYILFLIFLGGMLVLFIYITSLASNEKFKFSL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018  83 IIMVILMFMMIiitmiliivdkTMFLDPIKNTETMNINNSINYQEMSMSLEKLYNKPTLTTTMMMMIYLFLALVAVVKIT 162
Cdd:MTH00166  81 KLLILFLLMLL-----------LMLNNFIKNSEMSNFNNNFNFFENSFSLSKLYNFPTMLITLFMIIYLLLTLIVVVKIT 149

                        170
                 ....*....|.
gi 296041018 163 NINQGPIRKMS 173
Cdd:MTH00166 150 NIFKGPLRSKN 160
ND6 MTH00152
NADH dehydrogenase subunit 6; Provisional
 1-170 5.41e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214437  Cd Length: 163  Bit Score: 52.58  E-value: 5.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018   1 MIKMIIMALSNMMNINFIKLNHPMSMMMFIIIQTFIVGLITGtMMESFWLSYILFLTFLGGMLVLFIYITSIASNELFKP 80
Cdd:MTH00152   1 MSLMILLSVCFSLFLLLPLSKQPLSLGLVLLLLSLFVCVEIG-LTLSSWYGYLLFLVYVGGLLVMFAYVVSLSPNPLFGS 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018  81 KSIIMVILMFMMIIITMIliivdktMFLDPIKNTETMNINNSINYQEMSMSL-EKLYNKPTLTTTMMMMIYLFLALVAVV 159
Cdd:MTH00152  80 NFKFVFFSLTLFGFLGLF-------FFFLYLYSSGGLSLSSLFDGSSGSLSFgGGLYSSSGWSIFVFLAVLLLIVMVSVV 152

                        170
                 ....*....|.
gi 296041018 160 KITNINQGPIR 170
Cdd:MTH00152 153 KICYYEEGSLR 163
ND6 MTH00212
NADH dehydrogenase subunit 6; Provisional
 1-171 5.60e-09

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214460  Cd Length: 160  Bit Score: 52.32  E-value: 5.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018   1 MIKMIIMALSNMMNINFIKLNHPMSMMMFIIIQTFIVGLITgTMMESFWLSYILFLTFLGGMLVLFIYITSIASNELFKP 80
Cdd:MTH00212   1 MLLSLLLSLLLLLMLLFPLSAHPLTLGVSLLLSSLLSCLII-TMESNSWYGYILFLIYIGGLLVLFGYMVALSPNEHLFF 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296041018  81 KSIIMVILMFMMIIITMILIIVDKTMFLDPIKNTetmninnsinyqEMSMSLEKLYNKPTLTTTMMMMIYLFLALVAVVK 160
Cdd:MTH00212  80 KKYFKGFGMILISLNLYLLLMTLGSSNFSPMLNL------------KLELNVSKILSNNNIPILLFLGLILLIALLMVVK 147

                        170
                 ....*....|.
gi 296041018 161 ITNINQGPIRK 171
Cdd:MTH00212 148 ICQYYKGPLRP 158
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 47-68 5.77e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 38.58  E-value: 5.77e-04
                         10        20
                 ....*....|....*....|..
gi 296041018  47 SFwLSYILFLTFLGGMLVLFIY 68
Cdd:MTH00138  49 SF-LSLVLFLIYLGGMLVVFAY 69
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 47-73 8.45e-03

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 35.21  E-value: 8.45e-03
                         10        20
                 ....*....|....*....|....*..
gi 296041018  47 SFwLSYILFLTFLGGMLVLFIYITSIA 73
Cdd:MTH00065  49 SF-LSLVLFLIYLGGMLVVFAYSAALA 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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