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Conserved domains on  [gi|292606409|ref|YP_003541045|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Homo sapiens subsp. 'Denisova']

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009566)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177166  Cd Length: 318  Bit Score: 539.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409   1 MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  81 IALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 161 NLSTLITTQEHLWLLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 292606409 241 IFLGTTYNALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPPQT 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 539.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409   1 MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  81 IALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 161 NLSTLITTQEHLWLLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 292606409 241 IFLGTTYNALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPPQT 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
NADHdh pfam00146
NADH dehydrogenase;
16-305 1.05e-115

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 335.98  E-value: 1.05e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409   16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409   96 V--NLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLW 173
Cdd:pfam00146  92 VlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  174 LLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGtTYNALSPE 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG-GWLGPFPL 250

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 292606409  254 LYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYV 305
Cdd:pfam00146 251 PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 16-303 8.87e-104

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 306.67  E-value: 8.87e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:COG1005   25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFGPGL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 V--NLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLW 173
Cdd:COG1005  105 VlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAGGL 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 174 LLLPSWPLA-MMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLG-----TTY 247
Cdd:COG1005  185 WFILPQPLAfVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGgwlgpFPI 264

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 292606409 248 NALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMW 303
Cdd:COG1005  265 LPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
 
Name Accession Description Interval E-value
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
 1-318 0e+00

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 539.60  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409   1 MPMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALT 80
Cdd:MTH00104   1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  81 IALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSF 160
Cdd:MTH00104  81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 161 NLSTLITTQEHLWLLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTT 240
Cdd:MTH00104 161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 292606409 241 IFLGTTYNALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPPQT 318
Cdd:MTH00104 241 LFLGAFHNPYMPELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASIPPQT 318
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
 16-318 5.01e-175

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 487.10  E-value: 5.01e-175
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00111  21 AVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILALLLALTIWTPLPMPFPL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLL 175
Cdd:MTH00111 101 ADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSGGYTLQTLATTQEPLWLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYNALSPELY 255
Cdd:MTH00111 181 FSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLTTILFLNPSTLNLPPELF 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 292606409 256 TTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPPQT 318
Cdd:MTH00111 261 TINLMTKTLLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPISLAGLPPQL 323
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
 16-317 2.24e-166

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 465.25  E-value: 2.24e-166
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00071  21 AVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMALTLALIIWTPLPMPNNL 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLL 175
Cdd:MTH00071 101 SNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTGGFSLMNFNTTQEFMWLI 180

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYNALSPELY 255
Cdd:MTH00071 181 IPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLSTILFLGSTYNHLQPELS 260

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 292606409 256 TTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPPQ 317
Cdd:MTH00071 261 TMNLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLGIPPM 322
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
 16-318 9.36e-160

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 448.67  E-value: 9.36e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00134  22 AVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPMLALTLALTLWAPMPMPYPV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLL 175
Cdd:MTH00134 102 TDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQTFNTAQESIWLL 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYNALSPELY 255
Cdd:MTH00134 182 LPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLMNTLSAILFLGASHIPTLPELT 261

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 292606409 256 TTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPPQT 318
Cdd:MTH00134 262 TINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAFAGLPPQL 324
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
 16-316 3.85e-137

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 390.81  E-value: 3.85e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00218  18 AVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLALLLWMPLPLPFSL 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLL 175
Cdd:MTH00218  98 INLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSLEGFNLTQETIWLL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYNALSpely 255
Cdd:MTH00218 178 IPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILFLGTSLTTIN---- 253

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 292606409 256 ttyFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPP 316
Cdd:MTH00218 254 ---LMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSFASLPP 311
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
 16-316 1.74e-136

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 389.72  E-value: 1.74e-136
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00040  20 AVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPVLFLFLALLLWSLIPVPTPT 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLL 175
Cdd:MTH00040 100 LNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIFSGSFSLSSISNSQNGSWLL 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTT--YNALSPe 253
Cdd:MTH00040 180 FPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNLLSVILFLGGGspFNEIFP- 258

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 292606409 254 LYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPP 316
Cdd:MTH00040 259 INIIIVGIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLLNILPP 321
NADHdh pfam00146
NADH dehydrogenase;
16-305 1.05e-115

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 335.98  E-value: 1.05e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409   16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:pfam00146  12 AVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAFAVIPFGPGL 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409   96 V--NLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLW 173
Cdd:pfam00146  92 VlaDLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSEIVEAQAGGW 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  174 LLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGtTYNALSPE 253
Cdd:pfam00146 172 FIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG-GWLGPFPL 250

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 292606409  254 LYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYV 305
Cdd:pfam00146 251 PGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLLTA 302
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
 18-309 1.06e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 330.96  E-value: 1.06e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  18 AFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVN 97
Cdd:MTH00193  20 AFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFSLFLSLLIWLIYPYLFNLIS 99

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  98 LNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLLLP 177
Cdd:MTH00193 100 FNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIGSFNLLDFMNYQKYIWFIFF 179

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 178 SWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTtynalspELYTT 257
Cdd:MTH00193 180 SFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLFVLMFLGG-------DLLSL 252

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 292606409 258 YFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPI 309
Cdd:MTH00193 253 LFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKI 304
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
 16-307 9.97e-113

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 328.75  E-value: 9.97e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00143  17 AVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSLILALLLWQLYPSYFSS 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLL 175
Cdd:MTH00143  97 SYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGSFSFIEISESQFSVWLG 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTtyNALSPELY 255
Cdd:MTH00143 177 FLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTVVLFFGG--SSVLFLLG 254

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 292606409 256 TTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSM 307
Cdd:MTH00143 255 GVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVL 306
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
 16-313 2.11e-112

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 327.85  E-value: 2.11e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00195  18 AVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLALALALILWVPIPSPFGF 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLL 175
Cdd:MTH00195  98 SSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAGSFDFTIMVISQGFSWVI 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTynalspelY 255
Cdd:MTH00195 178 LLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLTTILFLGGG--------G 249

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 292606409 256 TTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISS 313
Cdd:MTH00195 250 TIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFALNS 307
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
 16-306 1.66e-105

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 310.43  E-value: 1.66e-105
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00225  17 SVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLILSLILWSLYPSMFSI 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLL 175
Cdd:MTH00225  97 YSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTYNLFDFSYNQKYFWFM 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYNALSpely 255
Cdd:MTH00225 177 FVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSILFFGGFFVTID---- 252

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 292606409 256 tTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVS 306
Cdd:MTH00225 253 -LFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLI 302
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
 16-303 8.87e-104

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 306.67  E-value: 8.87e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:COG1005   25 LAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPILAFIPALLAFAVIPFGPGL 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 V--NLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLW 173
Cdd:COG1005  105 VlaDLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVLLAGSLNLSEIVEAQAGGL 184

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 174 LLLPSWPLA-MMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLG-----TTY 247
Cdd:COG1005  185 WFILPQPLAfVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLVSALATTLFLGgwlgpFPI 264

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 292606409 248 NALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMW 303
Cdd:COG1005  265 LPLGGLPGILWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSLVNLVL 320
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
 16-316 1.32e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 301.26  E-value: 1.32e-101
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00054  18 SIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILSLTLAFIAWGVIPYGEGV 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 V--NLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLW 173
Cdd:MTH00054  98 VlsDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLCVGSLNLTEIVLAQKNIW 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 174 LLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYNALSPE 253
Cdd:MTH00054 178 FIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMSTFGVILFLGGWLVISGPT 257

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 292606409 254 LYTTYFV---TKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPP 316
Cdd:MTH00054 258 SYFSNFVwfgIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGFNALPP 323
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
18-303 1.46e-100

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 298.26  E-value: 1.46e-100
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  18 AFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPM-PN-PL 95
Cdd:PRK06076  28 AFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIAFIPAFLAWAVIPFgPElVI 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLL 175
Cdd:PRK06076 108 ADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLNLSDIVEAQFLSWNI 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGtTYNALSPELY 255
Cdd:PRK06076 188 IPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSALITTLFLG-GWLPPFPLGG 266

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 292606409 256 T----TYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMW 303
Cdd:PRK06076 267 GipgaIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSLVNLLL 318
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
 16-316 5.33e-98

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 292.02  E-value: 5.33e-98
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00216  22 AVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVAPVLSFTLALIVWGVIPYERGV 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 V--NLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLW 173
Cdd:MTH00216 102 LisDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIISVLLCVGSLSITEIVLAQNNGI 181

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 174 LLLP-SWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGttyNALSP 252
Cdd:MTH00216 182 WFFFpLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHIILMSCLTTILFLG---GWLSP 258

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 292606409 253 ELY----TTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPP 316
Cdd:MTH00216 259 IKYfkggAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASVLFGFNGPPP 326
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
 16-307 6.34e-91

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 273.58  E-value: 6.34e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00010  19 AMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLILALLLWSLYPHKHPS 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQeHLWLL 175
Cdd:MTH00010  99 FFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFSFSKIIMSQ-YSWIL 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGT-TYNALSPel 254
Cdd:MTH00010 178 LMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVFFTSFiPSIFISD-- 255

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 292606409 255 ytTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSM 307
Cdd:MTH00010 256 --LMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPI 306
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
 16-316 1.20e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 253.40  E-value: 1.20e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNP- 94
Cdd:MTH00029  23 SVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPIISFTLAILAWAIVTMDQGv 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  95 -LVNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLW 173
Cdd:MTH00029 103 fLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVILCVGSLNISEIVISQRSVW 182

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 174 LLLPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLG--------- 244
Cdd:MTH00029 183 LIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILMSCMMTIFFLGgwlspldgi 262

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 292606409 245 -------TTYNALSPELYTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSMPITISSIPP 316
Cdd:MTH00029 263 ptppeafSIFEQIASSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSLGLVILTAGILIGFNGVPP 341
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
 16-307 9.85e-59

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 190.11  E-value: 9.85e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  16 AMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPL 95
Cdd:MTH00090  12 AIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYLEWFVLPYFFDF 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  96 VNLNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLStlittqehLWLL 175
Cdd:MTH00090  92 LSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFV--------SSFS 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 176 LPSWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYNALspely 255
Cdd:MTH00090 164 LSLFVIYLPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFFKFSFLML----- 238

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 292606409 256 ttyfvtktLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYVSM 307
Cdd:MTH00090 239 --------FLIFSLLIFIRSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVL 282
ndhA CHL00032
NADH dehydrogenase subunit 1
 24-302 4.60e-45

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 157.04  E-value: 4.60e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  24 ERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLV--NLNLG 101
Cdd:CHL00032  51 EREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGPSIAVISILLSYLVIPFGYHLVlaDLSIG 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 102 LLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLLLPSWPL 181
Cdd:CHL00032 131 VFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEAQSKYGFWGWNLWR 210

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 182 A----MMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLG------------- 244
Cdd:CHL00032 211 QpigfIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGgwnlsipyifipe 290

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 292606409 245 -TTYNALSPELYTTYFVTKTLLLTSLFLWI----RTAYPRFRYDQLMHLLWKNFLPLTLALLM 302
Cdd:CHL00032 291 lFEINKTGGVFGTTIGIFITLAKTYLFLFIsittRWTLPRLRMDQLLNLGWKFLLPISLGNLL 353
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
 18-305 4.73e-45

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 155.08  E-value: 4.73e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  18 AFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVN 97
Cdd:MTH00058  19 AFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLVLLVVFYCFIYGSYYSGSY 98

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  98 LNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLitTQEHLWLLLP 177
Cdd:MTH00058  99 SSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGSYSLVDF--YYSGWLSVLL 176

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 178 SWPLAMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTYNALspelytt 257
Cdd:MTH00058 177 FPLIYILWLVCILCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLGSVLFFGGGFVSI------- 249

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*...
gi 292606409 258 yFVTKTLLltsLFLWIRTAYPRFRYDQLMHLLWKnflpLTLALLMWYV 305
Cdd:MTH00058 250 -MLLFHLL---FFMWARATLPRVRYDYFVNFFWE----YCLVLLILSL 289
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
19-305 1.31e-30

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 117.21  E-value: 1.31e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  19 FLMLTERKILGYMQLRKGPnivgpyGLLQPFADAMKLFTKEPLKPSTSTITLYITAPTLALTIALLLW-TPLPMPNPLVN 97
Cdd:COG0650   20 LLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVPETASWLFRAAPYVALAAMLLAALlVPVLTTGPPLS 93

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409  98 LNLGLLFILATSSLAVYSILWSGWASNSNYALIGALRAVAQTISYEVTLAIILLSMLLMSGSFNLSTLITTQEHLWLLLP 177
Cdd:COG0650   94 FSGDLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLAGSTSLSDIVAYQAAHGPLLL 173

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 292606409 178 SWPL---AMMWFISTLAETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEYTNIIMMNTLTTTIFLGTTyNALSPEL 254
Cdd:COG0650  174 SPSLllaAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVLLSLFVNLFLPWG-IALTLLL 252

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|.
gi 292606409 255 YTTYFVTKTLLLTSLFLWIRTAYPRFRYDQLMHLLWKNFLPLTLALLMWYV 305
Cdd:COG0650  253 ALLLFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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