|
Name |
Accession |
Description |
Interval |
E-value |
| Rav1p_C super family |
cl13644 |
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between ... |
923-1266 |
1.71e-62 |
|
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. The actual alignment was detected with superfamily member pfam12234:
Pssm-ID: 432413 Cd Length: 637 Bit Score: 227.07 E-value: 1.71e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 923 RDTLDECGLRYLLAMRLHTclltslppLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWW 1002
Cdd:pfam12234 313 RRSLDENGARFLLGFKLHL--------LHKKRTSQSSLSWRDISWALHSDNQEILLDLVSRHYGNKLLWEAARESGIFMW 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 1003 VRNINTLRRCIEKVAKASFQRNN--DALDAALFYLSMKKKAVVWGLFR--SQHDE--KMTTFFSHNFNEDRWRKAALKNA 1076
Cdd:pfam12234 385 LKDIEALRAQFEVIARNEYTKSDerDPVDCSLFYLALKKKQVLQGLWRmaSWHPEqaKTLKFLSNDFSEPRWRTAALKNA 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 1077 FSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLYESefETSSTYISILNQKIL-GCQKDGsgfsckrl 1155
Cdd:pfam12234 465 FALLSKHRYEYAAAFFLLADSLKDAVNVLLRQLKDLQLAIAVARVYEG--DDGPVLRELLEERVLpLAIKEG-------- 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 1156 hpDPFLRSLAYWVMK---DYTRAL----DTLLEQTPKEDDEHQVII-KSC---NPVAFSFYNYLRTHPL-LIRRNLASPE 1223
Cdd:pfam12234 535 --DRWLASWAFWMLKrrdLAVRALvtppYDLLENTDLKKSDPASPVsKSFltdDPALVLLYQQLRKKTLqTLKGALKVTP 612
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 291621660 1224 gtlatlglKTEKNFVdkinlierklfFTTANAHFKVGCPVLAL 1266
Cdd:pfam12234 613 --------KEEYDFV-----------LRVARIYDRMGCDLLAL 636
|
|
| WD40 super family |
cl29593 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2130-2382 |
5.41e-22 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment. The actual alignment was detected with superfamily member cd00200:
Pssm-ID: 475233 [Multi-domain] Cd Length: 289 Bit Score: 98.56 E-value: 5.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2130 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAGNArVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPY 2209
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGTYLASGSSDKTIRLWDLE----TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2210 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2289
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2290 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSeHakqsifrniGAGVMQIDIIQG 2369
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-H---------ENGVNSVAFSPD 230
|
250
....*....|....
gi 291621660 2370 NRLF-SCGADGTLK 2382
Cdd:cd00200 231 GYLLaSGSEDGTIR 244
|
|
| WD40 super family |
cl43672 |
WD40 repeat [General function prediction only]; |
45-268 |
1.92e-03 |
|
WD40 repeat [General function prediction only]; The actual alignment was detected with superfamily member COG2319:
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 42.98 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 45 ECVQIIPGakHGNiQVSCVECSNQQGRIA-ASYGNAVCIFEPLGinshkrncqlkCQWLKTGQFFLSSVtYNLAWDPQDN 123
Cdd:COG2319 195 KLLRTLTG--HTG-AVRSVAFSPDGKLLAsGSADGTVRLWDLAT-----------GKLLRTLTGHSGSV-RSVAFSPDGR 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 124 RLLTATD--SIQLWAPPGDDILEEEEEIDNTVppvlndwkcvwqckTSVSvhlmeWSPDGEYFATAGkDDCLLKVWYPMT 201
Cdd:COG2319 260 LLASGSAdgTVRLWDLATGELLRTLTGHSGGV--------------NSVA-----FSPDGKLLASGS-DDGTVRLWDLAT 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 291621660 202 GWKSSIIPqdhhevkrrqsstqfsfvylAHPRAVTGFSWRktskymPRGsvcNVLLTSCHDGVCRLW 268
Cdd:COG2319 320 GKLLRTLT--------------------GHTGAVRSVAFS------PDG---KTLASGSDDGTVRLW 357
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Rav1p_C |
pfam12234 |
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between ... |
923-1266 |
1.71e-62 |
|
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Pssm-ID: 432413 Cd Length: 637 Bit Score: 227.07 E-value: 1.71e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 923 RDTLDECGLRYLLAMRLHTclltslppLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWW 1002
Cdd:pfam12234 313 RRSLDENGARFLLGFKLHL--------LHKKRTSQSSLSWRDISWALHSDNQEILLDLVSRHYGNKLLWEAARESGIFMW 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 1003 VRNINTLRRCIEKVAKASFQRNN--DALDAALFYLSMKKKAVVWGLFR--SQHDE--KMTTFFSHNFNEDRWRKAALKNA 1076
Cdd:pfam12234 385 LKDIEALRAQFEVIARNEYTKSDerDPVDCSLFYLALKKKQVLQGLWRmaSWHPEqaKTLKFLSNDFSEPRWRTAALKNA 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 1077 FSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLYESefETSSTYISILNQKIL-GCQKDGsgfsckrl 1155
Cdd:pfam12234 465 FALLSKHRYEYAAAFFLLADSLKDAVNVLLRQLKDLQLAIAVARVYEG--DDGPVLRELLEERVLpLAIKEG-------- 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 1156 hpDPFLRSLAYWVMK---DYTRAL----DTLLEQTPKEDDEHQVII-KSC---NPVAFSFYNYLRTHPL-LIRRNLASPE 1223
Cdd:pfam12234 535 --DRWLASWAFWMLKrrdLAVRALvtppYDLLENTDLKKSDPASPVsKSFltdDPALVLLYQQLRKKTLqTLKGALKVTP 612
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 291621660 1224 gtlatlglKTEKNFVdkinlierklfFTTANAHFKVGCPVLAL 1266
Cdd:pfam12234 613 --------KEEYDFV-----------LRVARIYDRMGCDLLAL 636
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2130-2382 |
5.41e-22 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 98.56 E-value: 5.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2130 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAGNArVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPY 2209
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGTYLASGSSDKTIRLWDLE----TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2210 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2289
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2290 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSeHakqsifrniGAGVMQIDIIQG 2369
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-H---------ENGVNSVAFSPD 230
|
250
....*....|....
gi 291621660 2370 NRLF-SCGADGTLK 2382
Cdd:cd00200 231 GYLLaSGSEDGTIR 244
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2130-2382 |
7.71e-22 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 100.76 E-value: 7.71e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2130 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFrQAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVnqtaSNPKPY 2209
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTL-TGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL----ATGKLL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2210 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTLispGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2289
Cdd:COG2319 156 RTLTGHSGAVTSVAFSPDGKLLASGS---DDGTVRLWDLA---TGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVR 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2290 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSEhakqsifrniGAGVMQIDII-Q 2368
Cdd:COG2319 230 LWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGH----------SGGVNSVAFSpD 299
|
250
....*....|....
gi 291621660 2369 GNRLFSCGADGTLK 2382
Cdd:COG2319 300 GKLLASGSDDGTVR 313
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
2295-2333 |
3.05e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 43.07 E-value: 3.05e-05
10 20 30
....*....|....*....|....*....|....*....
gi 291621660 2295 QRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVW 2333
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
2296-2333 |
8.68e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.56 E-value: 8.68e-05
10 20 30
....*....|....*....|....*....|....*...
gi 291621660 2296 RQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVW 2333
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
45-268 |
1.92e-03 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 42.98 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 45 ECVQIIPGakHGNiQVSCVECSNQQGRIA-ASYGNAVCIFEPLGinshkrncqlkCQWLKTGQFFLSSVtYNLAWDPQDN 123
Cdd:COG2319 195 KLLRTLTG--HTG-AVRSVAFSPDGKLLAsGSADGTVRLWDLAT-----------GKLLRTLTGHSGSV-RSVAFSPDGR 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 124 RLLTATD--SIQLWAPPGDDILEEEEEIDNTVppvlndwkcvwqckTSVSvhlmeWSPDGEYFATAGkDDCLLKVWYPMT 201
Cdd:COG2319 260 LLASGSAdgTVRLWDLATGELLRTLTGHSGGV--------------NSVA-----FSPDGKLLASGS-DDGTVRLWDLAT 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 291621660 202 GWKSSIIPqdhhevkrrqsstqfsfvylAHPRAVTGFSWRktskymPRGsvcNVLLTSCHDGVCRLW 268
Cdd:COG2319 320 GKLLRTLT--------------------GHTGAVRSVAFS------PDG---KTLASGSDDGTVRLW 357
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| Rav1p_C |
pfam12234 |
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between ... |
923-1266 |
1.71e-62 |
|
RAVE protein 1 C terminal; This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Pssm-ID: 432413 Cd Length: 637 Bit Score: 227.07 E-value: 1.71e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 923 RDTLDECGLRYLLAMRLHTclltslppLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWW 1002
Cdd:pfam12234 313 RRSLDENGARFLLGFKLHL--------LHKKRTSQSSLSWRDISWALHSDNQEILLDLVSRHYGNKLLWEAARESGIFMW 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 1003 VRNINTLRRCIEKVAKASFQRNN--DALDAALFYLSMKKKAVVWGLFR--SQHDE--KMTTFFSHNFNEDRWRKAALKNA 1076
Cdd:pfam12234 385 LKDIEALRAQFEVIARNEYTKSDerDPVDCSLFYLALKKKQVLQGLWRmaSWHPEqaKTLKFLSNDFSEPRWRTAALKNA 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 1077 FSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLYESefETSSTYISILNQKIL-GCQKDGsgfsckrl 1155
Cdd:pfam12234 465 FALLSKHRYEYAAAFFLLADSLKDAVNVLLRQLKDLQLAIAVARVYEG--DDGPVLRELLEERVLpLAIKEG-------- 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 1156 hpDPFLRSLAYWVMK---DYTRAL----DTLLEQTPKEDDEHQVII-KSC---NPVAFSFYNYLRTHPL-LIRRNLASPE 1223
Cdd:pfam12234 535 --DRWLASWAFWMLKrrdLAVRALvtppYDLLENTDLKKSDPASPVsKSFltdDPALVLLYQQLRKKTLqTLKGALKVTP 612
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 291621660 1224 gtlatlglKTEKNFVdkinlierklfFTTANAHFKVGCPVLAL 1266
Cdd:pfam12234 613 --------KEEYDFV-----------LRVARIYDRMGCDLLAL 636
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2130-2382 |
5.41e-22 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 98.56 E-value: 5.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2130 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAGNArVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPY 2209
Cdd:cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAASADGTYLASGSSDKTIRLWDLE----TGECV 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2210 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2289
Cdd:cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDV---ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2290 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSeHakqsifrniGAGVMQIDIIQG 2369
Cdd:cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG-H---------ENGVNSVAFSPD 230
|
250
....*....|....
gi 291621660 2370 NRLF-SCGADGTLK 2382
Cdd:cd00200 231 GYLLaSGSEDGTIR 244
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2130-2382 |
7.71e-22 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 100.76 E-value: 7.71e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2130 VKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFrQAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVnqtaSNPKPY 2209
Cdd:COG2319 81 VLSVAFSPDGRLLASASADGTVRLWDLATGLLLRTL-TGHTGAVRSVAFSPDGKTLASGSADGTVRLWDL----ATGKLL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2210 MSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTLispGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVC 2289
Cdd:COG2319 156 RTLTGHSGAVTSVAFSPDGKLLASGS---DDGTVRLWDLA---TGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGTVR 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2290 IFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKSEhakqsifrniGAGVMQIDII-Q 2368
Cdd:COG2319 230 LWDLATGKLLRTLTGHSGSVRSVAFSPDGRLLASGSADGTVRLWDLATGELLRTLTGH----------SGGVNSVAFSpD 299
|
250
....*....|....
gi 291621660 2369 GNRLFSCGADGTLK 2382
Cdd:COG2319 300 GKLLASGSDDGTVR 313
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2140-2382 |
2.42e-21 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 99.22 E-value: 2.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2140 QYYLTGAQDGSVRMFEWTRPQQLVCFRqAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPYMSWQCHSKAT 2219
Cdd:COG2319 175 KLLASGSDDGTVRLWDLATGKLLRTLT-GHTGAVRSVAFSPDGKLLASGSADGTVRLWDLA----TGKLLRTLTGHSGSV 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2220 SDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLI 2299
Cdd:COG2319 250 RSVAFSPDGRLLASGS---ADGTVRLWDL---ATGELLRTLTGHSGGVNSVAFSPDGKLLASGSDDGTVRLWDLATGKLL 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2300 HTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKsEHakqsifrniGAGVMQIDI-IQGNRLFSCGAD 2378
Cdd:COG2319 324 RTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELLRTLT-GH---------TGAVTSVAFsPDGRTLASGSAD 393
|
....
gi 291621660 2379 GTLK 2382
Cdd:COG2319 394 GTVR 397
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2128-2383 |
2.77e-19 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 90.86 E-value: 2.77e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2128 HNVKRMTSHPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAgNARVTRLYFNSQGN--KCGVADGEgfLSIWQVNqtasN 2205
Cdd:cd00200 52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGH-TSYVSSVAFSPDGRilSSSSRDKT--IKVWDVE----T 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2206 PKPYMSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRK 2285
Cdd:cd00200 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSS---QDGTIKLWDL---RTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2286 GHVCIFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFkSEHAKqsifrnigaGVMQID 2365
Cdd:cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTN---------SVTSLA 268
|
250
....*....|....*....
gi 291621660 2366 IIQ-GNRLFSCGADGTLKT 2383
Cdd:cd00200 269 WSPdGKRLASGSADGTIRI 287
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2170-2382 |
1.00e-18 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 88.93 E-value: 1.00e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2170 NARVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPYMSWQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTl 2249
Cdd:cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLE----TGELLRTLKGHTGPVRDVAASADGTYLASGS---SDKTIRLWDL- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2250 isPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGN 2329
Cdd:cd00200 81 --ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 291621660 2330 IKVWRLTGHGLIHSFKSeHAKQsifrnigagVMQIDII-QGNRLFSCGADGTLK 2382
Cdd:cd00200 159 IKLWDLRTGKCVATLTG-HTGE---------VNSVAFSpDGEKLLSSSSDGTIK 202
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2140-2337 |
4.45e-18 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 89.20 E-value: 4.45e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2140 QYYLTGAQDGSVRMFEWTRPQQLVCFRqAGNARVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPYMSWQCHSKAT 2219
Cdd:COG2319 217 KLLASGSADGTVRLWDLATGKLLRTLT-GHSGSVRSVAFSPDGRLLASGSADGTVRLWDLA----TGELLRTLTGHSGGV 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2220 SDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLI 2299
Cdd:COG2319 292 NSVAFSPDGKLLASGS---DDGTVRLWDL---ATGKLLRTLTGHTGAVRSVAFSPDGKTLASGSDDGTVRLWDLATGELL 365
|
170 180 190
....*....|....*....|....*....|....*...
gi 291621660 2300 HTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTG 2337
Cdd:COG2319 366 RTLTGHTGAVTSVAFSPDGRTLASGSADGTVRLWDLAT 403
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2136-2334 |
1.72e-16 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 82.38 E-value: 1.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2136 HPVHQYYLTGAQDGSVRMFEWTRPQQLVCFRQAgNARVTRLYFNSQGNKCGVADGEGFLSIWQVNqtasNPKPYMSWQCH 2215
Cdd:cd00200 102 SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH-TDWVNSVAFSPDGTFVASSSQDGTIKLWDLR----TGKCVATLTGH 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2216 SKATSDFAFITSSSLVATSGhsnDNRNVCLWDTLISpgnSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQ 2295
Cdd:cd00200 177 TGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250
|
170 180 190
....*....|....*....|....*....|....*....
gi 291621660 2296 RQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWR 2334
Cdd:cd00200 251 GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2212-2382 |
2.83e-13 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 72.75 E-value: 2.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2212 WQCHSKATSDFAFITSSSLVATSGhsnDNRNVCLWDTlisPGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIF 2291
Cdd:cd00200 5 LKGHTGGVTCVAFSPDGKLLATGS---GDGTIKVWDL---ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLW 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2292 DIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTghglihSFKSEHAkqsiFRNIGAGVMQIDIIQGNR 2371
Cdd:cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE------TGKCLTT----LRGHTDWVNSVAFSPDGT 148
|
170
....*....|..
gi 291621660 2372 -LFSCGADGTLK 2382
Cdd:cd00200 149 fVASSSQDGTIK 160
|
|
| WD40 |
cd00200 |
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ... |
2256-2382 |
1.11e-11 |
|
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.
Pssm-ID: 238121 [Multi-domain] Cd Length: 289 Bit Score: 68.13 E-value: 1.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2256 LIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIRQRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRL 2335
Cdd:cd00200 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 291621660 2336 TGHGLIHSFKSeHAKqsifrnigaGVMQIDIIQGNR-LFSCGADGTLK 2382
Cdd:cd00200 81 ETGECVRTLTG-HTS---------YVSSVAFSPDGRiLSSSSRDKTIK 118
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
2215-2382 |
4.52e-08 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 58.00 E-value: 4.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2215 HSKATSDFAFITSSSLVATSGHSNDNRnvcLWDTLispGNSLIHGFTCHDHGATVLQYAPKQQLLISGGRKGHVCIFDIR 2294
Cdd:COG2319 35 LAAAVASLAASPDGARLAAGAGDLTLL---LLDAA---AGALLATLLGHTAAVLSVAFSPDGRLLASASADGTVRLWDLA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 2295 QRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVWRLTGHGLIHSFKsEHAkqsifrnigAGVMQIDII-QGNRLF 2373
Cdd:COG2319 109 TGLLLRTLTGHTGAVRSVAFSPDGKTLASGSADGTVRLWDLATGKLLRTLT-GHS---------GAVTSVAFSpDGKLLA 178
|
....*....
gi 291621660 2374 SCGADGTLK 2382
Cdd:COG2319 179 SGSDDGTVR 187
|
|
| WD40 |
smart00320 |
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ... |
2295-2333 |
3.05e-05 |
|
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Pssm-ID: 197651 [Multi-domain] Cd Length: 40 Bit Score: 43.07 E-value: 3.05e-05
10 20 30
....*....|....*....|....*....|....*....
gi 291621660 2295 QRQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVW 2333
Cdd:smart00320 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
|
| WD40 |
pfam00400 |
WD domain, G-beta repeat; |
2296-2333 |
8.68e-05 |
|
WD domain, G-beta repeat;
Pssm-ID: 459801 [Multi-domain] Cd Length: 39 Bit Score: 41.56 E-value: 8.68e-05
10 20 30
....*....|....*....|....*....|....*...
gi 291621660 2296 RQLIHTFQAHDSAIKALALDPYEEYFTTGSAEGNIKVW 2333
Cdd:pfam00400 1 GKLLKTLEGHTGSVTSLAFSPDGKLLASGSDDGTVKVW 38
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
45-268 |
1.92e-03 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 42.98 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 45 ECVQIIPGakHGNiQVSCVECSNQQGRIA-ASYGNAVCIFEPLGinshkrncqlkCQWLKTGQFFLSSVtYNLAWDPQDN 123
Cdd:COG2319 195 KLLRTLTG--HTG-AVRSVAFSPDGKLLAsGSADGTVRLWDLAT-----------GKLLRTLTGHSGSV-RSVAFSPDGR 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 291621660 124 RLLTATD--SIQLWAPPGDDILEEEEEIDNTVppvlndwkcvwqckTSVSvhlmeWSPDGEYFATAGkDDCLLKVWYPMT 201
Cdd:COG2319 260 LLASGSAdgTVRLWDLATGELLRTLTGHSGGV--------------NSVA-----FSPDGKLLASGS-DDGTVRLWDLAT 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 291621660 202 GWKSSIIPqdhhevkrrqsstqfsfvylAHPRAVTGFSWRktskymPRGsvcNVLLTSCHDGVCRLW 268
Cdd:COG2319 320 GKLLRTLT--------------------GHTGAVRSVAFS------PDG---KTLASGSDDGTVRLW 357
|
|
|