NCBI Conserved Domain Search

Conserved domains on [gi|290967604|gb|ADD71035|]

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phosphenolpyruvate carboxylase, partial (plastid) [Schiedea verticillata]

Protein Classification

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List of domain hits

Name

Accession

Description

Interval

E-value

PEPcase super family

cl21521

Phosphoenolpyruvate carboxylase;

1-29

1.18e-07

Phosphoenolpyruvate carboxylase;

The actual alignment was detected with superfamily member pfam00311:

Pssm-ID: 451287 Cd Length: 920 Bit Score: 44.10 E-value: 1.18e-07

                          10        20
                  ....*....|....*....|....*....
gi 290967604    1 ALKNIGiNERVPYNAPLIQFSSWMGGDRD 29
Cdd:pfam00311 225 ALKESF-GALLPPLAPFLRFGSWMGGDRD 252

Name

Accession

Description

Interval

E-value

PEPcase

pfam00311

Phosphoenolpyruvate carboxylase;

1-29

1.18e-07

Phosphoenolpyruvate carboxylase;

Pssm-ID: 425598 Cd Length: 920 Bit Score: 44.10 E-value: 1.18e-07

                          10        20
                  ....*....|....*....|....*....
gi 290967604    1 ALKNIGiNERVPYNAPLIQFSSWMGGDRD 29
Cdd:pfam00311 225 ALKESF-GALLPPLAPFLRFGSWMGGDRD 252

PRK00009

phosphoenolpyruvate carboxylase; Reviewed

9-29

1.56e-06

phosphoenolpyruvate carboxylase; Reviewed

Pssm-ID: 234570 Cd Length: 911 Bit Score: 40.89 E-value: 1.56e-06

                         10        20
                 ....*....|....*....|.
gi 290967604   9 ERVPYNAPLIQFSSWMGGDRD 29
Cdd:PRK00009 238 LQLPLDAAPLRFGSWIGGDRD 258

Ppc

COG2352

Phosphoenolpyruvate carboxylase [Energy production and conversion]; Phosphoenolpyruvate ...

1-29

2.97e-05

Phosphoenolpyruvate carboxylase [Energy production and conversion]; Phosphoenolpyruvate carboxylase is part of the Pathway/BioSystem: Urea cycle

Pssm-ID: 441919 Cd Length: 932 Bit Score: 37.43 E-value: 2.97e-05

                         10        20
                 ....*....|....*....|....*....
gi 290967604   1 ALKNIGINERVPyNAPLIQFSSWMGGDRD 29
Cdd:COG2352  239 ALAEHYPDLDPP-LPPFLRFGSWIGGDRD 266

Name

Accession

Description

Interval

E-value

PEPcase

pfam00311

Phosphoenolpyruvate carboxylase;

1-29

1.18e-07

Phosphoenolpyruvate carboxylase;

Pssm-ID: 425598 Cd Length: 920 Bit Score: 44.10 E-value: 1.18e-07

                          10        20
                  ....*....|....*....|....*....
gi 290967604    1 ALKNIGiNERVPYNAPLIQFSSWMGGDRD 29
Cdd:pfam00311 225 ALKESF-GALLPPLAPFLRFGSWMGGDRD 252

PRK00009

phosphoenolpyruvate carboxylase; Reviewed

9-29

1.56e-06

phosphoenolpyruvate carboxylase; Reviewed

Pssm-ID: 234570 Cd Length: 911 Bit Score: 40.89 E-value: 1.56e-06

                         10        20
                 ....*....|....*....|.
gi 290967604   9 ERVPYNAPLIQFSSWMGGDRD 29
Cdd:PRK00009 238 LQLPLDAAPLRFGSWIGGDRD 258

Ppc

COG2352

Phosphoenolpyruvate carboxylase [Energy production and conversion]; Phosphoenolpyruvate ...

1-29

2.97e-05

Phosphoenolpyruvate carboxylase [Energy production and conversion]; Phosphoenolpyruvate carboxylase is part of the Pathway/BioSystem: Urea cycle

Pssm-ID: 441919 Cd Length: 932 Bit Score: 37.43 E-value: 2.97e-05

                         10        20
                 ....*....|....*....|....*....
gi 290967604   1 ALKNIGINERVPyNAPLIQFSSWMGGDRD 29
Cdd:COG2352  239 ALAEHYPDLDPP-LPPFLRFGSWIGGDRD 266

PTZ00398

phosphoenolpyruvate carboxylase; Provisional

11-29

3.85e-03

phosphoenolpyruvate carboxylase; Provisional

Pssm-ID: 173589 Cd Length: 974 Bit Score: 31.28 E-value: 3.85e-03

                         10
                 ....*....|....*....
gi 290967604  11 VPYNAPLIQFSSWMGGDRD 29
Cdd:PTZ00398 286 LPPTKKLFTFSSWVGGDRD 304

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01