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Conserved domains on  [gi|289178266|gb|ADC85512|]
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carbohydrate ABC transporter permease [Bifidobacterium animalis subsp. lactis BB-12]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 11417684)

carbohydrate ABC transporter permease, part of a periplasmic binding protein (PBP)-dependent ABC transporter may be involved in transport of one or more of a variety of mono-, di-, or polysaccharides, such as trehalose/maltose (MalG) and alginate (AlgM); responsible for translocation of the substrate across the membrane

Gene Ontology:  GO:0055085|GO:0008643
PubMed:  19234479|27273632
TCDB:  3.A.1.1.

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 48-326 1.91e-90

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 271.20  E-value: 1.91e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  48 PRKSTLLTIVCAVFAIYCLFPFLYILINSTKTQADFTSTFGLGFGKTFaLWDNIKTVFTyqDGIFGRWFLNTLFYVIVGA 127
Cdd:COG0395   11 RLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEF-TLENYRAAFT--DGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 128 GGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMIIPSLI--SPFGLYLMWIFS 205
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 206 eQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIMLKDANWYPLTIGLNQWKDQASTAg 285
Cdd:COG0395  168 -RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTD- 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 289178266 286 gqaiQNLVITGSMITIIPLVVAFLLLQKYWQSGLAAGAVKE 326
Cdd:COG0395  246 ----WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 48-326 1.91e-90

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 271.20  E-value: 1.91e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  48 PRKSTLLTIVCAVFAIYCLFPFLYILINSTKTQADFTSTFGLGFGKTFaLWDNIKTVFTyqDGIFGRWFLNTLFYVIVGA 127
Cdd:COG0395   11 RLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEF-TLENYRAAFT--DGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 128 GGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMIIPSLI--SPFGLYLMWIFS 205
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 206 eQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIMLKDANWYPLTIGLNQWKDQASTAg 285
Cdd:COG0395  168 -RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTD- 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 289178266 286 gqaiQNLVITGSMITIIPLVVAFLLLQKYWQSGLAAGAVKE 326
Cdd:COG0395  246 ----WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
97-319 1.10e-23

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 98.27  E-value: 1.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  97 LWDNIKTVFTYQDGI----FGRWFLNTLFYVIVGAGGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQF 172
Cdd:PRK10973  54 LLENIANIWVNGVGNnsapFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTV 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 173 LLFAKLGLTNTPWAMIIPSLISPFGLYLMWIFSeQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATW 252
Cdd:PRK10973 134 EVIANLKMLDSYAGLTLPLMASATATFLFRQFF-MTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGW 212

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 289178266 253 NNYFLPLIMLKDANWYPLTIGLnqwKDQASTAGGQAIQNLVITGSMITIIPLVVAFLLLQKYWQSGL 319
Cdd:PRK10973 213 NQYLWPLLIITDVSLGTAVAGI---KGMIATGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 116-277 5.41e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.01  E-value: 5.41e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 116 FLNTLFYVIVGAGGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMIIPSLI-- 193
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 194 -SPFGLYLMWIFSE--QAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIMLKDANWYPL 270
Cdd:cd06261   81 lLLIAPFARLIRRAalESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160


                 ....*..
gi 289178266 271 TIGLNQW 277
Cdd:cd06261  161 TGLLLIF 167
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 135-261 1.08e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 56.92  E-value: 1.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  135 IMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMIIPSLISpFGLYLMWIFSE--QAVPTE 212
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLG-WAGYARLIRRAalRSLPSD 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 289178266  213 LLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIM 261
Cdd:pfam00528  82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 131-242 1.58e-07

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 51.09  E-value: 1.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  131 TLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTN------------TPWAMIIPSLISPFGL 198
Cdd:TIGR02141  15 LPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGkllelfgislvfTFTGAVLASVIVSFPL 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 289178266  199 YLMWIF-SEQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVT 242
Cdd:TIGR02141  95 MVQPIRaAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLA 139
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 130-231 2.91e-03

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 37.91  E-value: 2.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 130 ATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAK------LGLTNTPWAMIIPS--LISPF--GLY 199
Cdd:NF038017  12 AALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQavLALPIvaGLT 91

                         90       100       110
                 ....*....|....*....|....*....|..
gi 289178266 200 LMWIfseQAVPTELLEAARVDGASEARTFFTV 231
Cdd:NF038017  92 LAAV---QGLDPELRLQILSLGATRWQALWTL 120
 
Name Accession Description Interval E-value
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 48-326 1.91e-90

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 271.20  E-value: 1.91e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  48 PRKSTLLTIVCAVFAIYCLFPFLYILINSTKTQADFTSTFGLGFGKTFaLWDNIKTVFTyqDGIFGRWFLNTLFYVIVGA 127
Cdd:COG0395   11 RLGRILLYLLLILLALLFLFPLYWMVVTSFKPPAEIFSGPPSLLPSEF-TLENYRAAFT--DGPFGRYLLNSLIVAVVST 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 128 GGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMIIPSLI--SPFGLYLMWIFS 205
Cdd:COG0395   88 VLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLIPLYLLFRQLGLLNTYWGLILPYLAfgLPFGIFLLRQFF 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 206 eQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIMLKDANWYPLTIGLNQWKDQASTAg 285
Cdd:COG0395  168 -RSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLWPLILLTSPDLRTLPVGLASFQGQYGTD- 245

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 289178266 286 gqaiQNLVITGSMITIIPLVVAFLLLQKYWQSGLAAGAVKE 326
Cdd:COG0395  246 ----WGLLMAAAVIATLPVLILFLFLQRYFVRGLTAGAVKG 282
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 39-326 5.42e-56

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 183.04  E-value: 5.42e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  39 KNGFTNVANPRKSTLLTIVCAVFAIYCLFPFLYILINS-TKTQADFTSTFglgFGKTFALwDNIKTVFTYQDgiFGRWFL 117
Cdd:COG3833    3 RRKSRKRRRRLKLGLRHLVLIILAIIALFPILWVVSASfNPGGSLYSSSL---IPENFTL-ENYKKLFTETP--FLRWFL 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 118 NTLFYVIVGAGGATLLAIMGGYALAKFRFPGRKA--VFAVIIGAIsvPGIALAVPQFLLFAKLGLTNTPWAMIIPSLIS- 194
Cdd:COG3833   77 NSLIVAVVTAIISVFLAALAAYAFSRFRFKGRKAglLALLLLQMF--PAFLALVALYLLLSALGLLNTLLGLILVYLGGa 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 195 -PFGLYLMWIFSEqAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIMLKDANWYPLTIG 273
Cdd:COG3833  155 iPFNTWLMKGYFD-TIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVLLRSPENYTLAVG 233

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 289178266 274 LNQW-KDQASTAGGQ--AiqnlvitGSMITIIPLVVAFLLLQKYWQSGLAAGAVKE 326
Cdd:COG3833  234 LYSFvSDQRNTNWGVfaA-------GAVLVAIPIVILFLFLQRYLVSGLTAGGVKG 282
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 49-274 5.42e-26

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 104.04  E-value: 5.42e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  49 RKSTLLTIVCAVFAIYCLFPFLYILINStktqadFTSTFGLGFGKTFALWDNIKTVFTYQDgiFGRWFLNTLFYVIVGAG 128
Cdd:COG1177    4 LGRLLLRLFLALVLLFLYLPILVLVLYS------FNDSWFLTFPPEGFTLRWYAELFSDPR--LLDALLNSLLIALLSTL 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 129 GATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMIIP--SLISPFGLYLMWIfSE 206
Cdd:COG1177   76 LATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLWGLILAhvVFTLPFVVLVVLA-RL 154

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 289178266 207 QAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLiMLKDANWYPLTIGL 274
Cdd:COG1177  155 QGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVITL-FLAGPGVTTLPVYI 221
PRK10973 PRK10973
sn-glycerol-3-phosphate ABC transporter permease UgpE;
97-319 1.10e-23

sn-glycerol-3-phosphate ABC transporter permease UgpE;


Pssm-ID: 182875 [Multi-domain]  Cd Length: 281  Bit Score: 98.27  E-value: 1.10e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  97 LWDNIKTVFTYQDGI----FGRWFLNTLFYVIVGAGGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQF 172
Cdd:PRK10973  54 LLENIANIWVNGVGNnsapFGRMLLNSFVMAFSITVGKITVSMLSAFAIVWFRFPLRNLFFWMIFITLMLPVEVRIFPTV 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 173 LLFAKLGLTNTPWAMIIPSLISPFGLYLMWIFSeQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATW 252
Cdd:PRK10973 134 EVIANLKMLDSYAGLTLPLMASATATFLFRQFF-MTLPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGW 212

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 289178266 253 NNYFLPLIMLKDANWYPLTIGLnqwKDQASTAGGQAIQNLVITGSMITIIPLVVAFLLLQKYWQSGL 319
Cdd:PRK10973 213 NQYLWPLLIITDVSLGTAVAGI---KGMIATGEGTTEWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL 276
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
59-261 7.65e-20

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 87.88  E-value: 7.65e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  59 AVFAIYCLFPFLYILINStktqadFTSTFGLGFGKTFALWDNIKTVFTyqDGIFGRWFLNTLFYVIVGAGGATLLAIMGG 138
Cdd:COG1175   29 LLLLVFVLYPLLYTLYLS------FTDWNLLGPPPEFVGLDNYARLFT--DPRFWNALGNTLLFTVVSVPLQLVLGLLLA 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 139 YALAKfRFPGRKAVFAVIIGAISVPGIALAV-------PQF----LLFAKLGLTNTPW---------AMIIPSLISPFGL 198
Cdd:COG1175  101 LLLNR-KLRGRGFFRTLFFLPWVISPVVVALiwkwlfnPDYgllnALLGALGLEPINWlgdpslalpAVIIVTVWKGTGF 179

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 289178266 199 YlMWIFSE--QAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIM 261
Cdd:COG1175  180 N-MLIFLAglQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVL 243
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
47-246 4.94e-18

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 84.44  E-value: 4.94e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  47 NPRKSTLLTIVCAVFAIYCLFPFLYILINStktqadFTSTFGLGFGktfalWDNIKTVFTYQDGIfgRWFLNTLFYVIVG 126
Cdd:COG1178  284 GRWRWLALALCLLLVLLGLLLPLLALLLWS------LTKALDDNLT-----LDNYRFVLLDPSLL--RALLNSLLLALLA 350

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 127 AGGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAK---LGLTNTPWAMIIPSLI--SPFGLyLM 201
Cdd:COG1178  351 ALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGLLLLFNRplpLLLYGTLAILVLAYVVrfLPFAL-RS 429

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 289178266 202 WIFSEQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALF 246
Cdd:COG1178  430 LEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALL 474
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 116-277 5.41e-16

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 75.01  E-value: 5.41e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 116 FLNTLFYVIVGAGGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMIIPSLI-- 193
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPALIla 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 194 -SPFGLYLMWIFSE--QAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIMLKDANWYPL 270
Cdd:cd06261   81 lLLIAPFARLIRRAalESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160


                 ....*..
gi 289178266 271 TIGLNQW 277
Cdd:cd06261  161 TGLLLIF 167
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
49-261 5.16e-15

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 75.58  E-value: 5.16e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  49 RKSTLLTIVCAVFAIYCLFPFLYILINSTktqadftstfglgfgktFALWDNIKTVFTyqDGIFGRWFLNTLFYVIVGAG 128
Cdd:COG1178    8 RPRLLLLLLALLLALLVLLPLLALLLRAF-----------------TDGLANFWALLS--DPYLWRALGNTLLLALLVTL 68

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 129 GATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMI----IPSLISPFGLYLMWIF 204
Cdd:COG1178   69 LSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALfglePPDIYGLGGIILVLVL 148

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 289178266 205 SE------------QAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIM 261
Cdd:COG1178  149 FNypyvylllraalRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL 217
malG PRK10998
maltose ABC transporter permease MalG;
114-325 5.72e-12

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 65.12  E-value: 5.72e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 114 RWFLNTLFYVIVGAGGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGL------TNTPWAM 187
Cdd:PRK10998  83 LWLWNSVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQyipfigLNTHGGV 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 188 IIPSLiSPFGLYLMWIFSE-QAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIMLKDAN 266
Cdd:PRK10998 163 IFAYL-GGIALHVWTIKGYfETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVN 241

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 289178266 267 WYPLTIGLNQ--------WKDQASTAggqaiqnlVITGsmitiIPLVVAFLLLQKYWQSGLAAGAVK 325
Cdd:PRK10998 242 SYTLAVGMQQylnpqnylWGDFAAAA--------VLSA-----IPITVVFLLAQRWLVGGLTAGGVK 295
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 53-261 3.04e-10

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 60.16  E-value: 3.04e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  53 LLTIVCAVFAIYCLFPFLYILINSTkTQADFTSTFGLGFGktfalWDNIKTVFTyqDGIFGRWFLNTLFYVIVGAGGATL 132
Cdd:COG1176   14 LLLPALLWLLLFFVLPLLLLLVYSF-TTRDPYGGVVPGFT-----LENYARLFT--DPLYLKVLLRTLWIALLTTLICLL 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 133 LAIMGGYALAKFRFPGRKAVFAVIIGAISVPGI--ALAVPQFL--------LFAKLGLTNTPWAMiipsLISPFGLY--L 200
Cdd:COG1176   86 LGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLvrTYAWIVLLgrngllnsLLLALGLIDEPLRL----LYTEFAVVigL 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 289178266 201 MWIF----------SEQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIM 261
Cdd:COG1176  162 VYVYlpfmvlplyaALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL 232
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 135-261 1.08e-09

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 56.92  E-value: 1.08e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  135 IMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMIIPSLISpFGLYLMWIFSE--QAVPTE 212
Cdd:pfam00528   3 PLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIILALLG-WAGYARLIRRAalRSLPSD 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 289178266  213 LLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIM 261
Cdd:pfam00528  82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL 130
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 130-242 3.47e-09

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 56.21  E-value: 3.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 130 ATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVP----GIALavpqFLLFAKLG-------------LTNTPWAMIIPSL 192
Cdd:COG4149   23 LLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPptvlGFYL----LLLFGRNGplgqlleelfgisLVFTWTGAVLASV 98

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 289178266 193 ISPFGLYLMWI---FseQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVT 242
Cdd:COG4149   99 VVSLPLMVQPLraaF--EAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILA 149
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 124-242 1.27e-08

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 55.14  E-value: 1.27e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 124 IVGAGGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVP----GIALAV---PQFLL---FAKLGLT--NTPWAMIIpS 191
Cdd:COG0555   64 LIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPtavaGIALLLlfgPNGWLgqlLAPLGIKvaFTPLGIVL-A 142

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 289178266 192 LI---SPFGL-YLMWIFSEqaVPTELLEAARVDGASEARTFFTVALPLLSPGIVT 242
Cdd:COG0555  143 QTfvsLPFVVrTVQPVLEE--LDPELEEAAATLGASRWQTFRRVILPLLLPALLT 195
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 116-248 4.76e-08

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 53.06  E-value: 4.76e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 116 FLNTLFYVIVGAGGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNTPWAMIIP--SLI 193
Cdd:PRK09500  59 AQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFAhiTFC 138

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 289178266 194 SPFglYLMWIFSE-QAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCAL--FTI 248
Cdd:PRK09500 139 LPF--VVVTVYSRlKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLlsFTL 194
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 131-242 1.58e-07

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 51.09  E-value: 1.58e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  131 TLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTN------------TPWAMIIPSLISPFGL 198
Cdd:TIGR02141  15 LPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIGkllelfgislvfTFTGAVLASVIVSFPL 94

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 289178266  199 YLMWIF-SEQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVT 242
Cdd:TIGR02141  95 MVQPIRaAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLA 139
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 108-242 3.14e-07

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 50.53  E-value: 3.14e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 108 QDGIFGRWFLNTLFYVIVGAGGATLLAIMGGYALAKFRFpGRKAVFAVIIGAISVPGIALAvPQFLLFakLGLTNTPWAM 187
Cdd:COG0600   55 ASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRL-LRRLLDPLLVFLRPIPPLALA-PLLILW--FGIGEASKIF 130

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 289178266 188 IIpSLISPFGLYLMWIFSEQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVT 242
Cdd:COG0600  131 VI-FLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFT 184
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 50-324 8.93e-07

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 50.45  E-value: 8.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266   50 KSTLLTIVCAVFAIYCLFPFLYILINSTKTQADftstfglgfgkTFALWDNIKTVFTyqDGIFGRWFLNTLFYVIVGAGG 129
Cdd:TIGR03262   3 ARLLLAGMILALLLFLLLPLLALLTKSVYDSDG-----------DFIGLANFAEYFA--TPGLLQSLGNSLTVSAIVTAI 69

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  130 ATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAKLGLTNT---------PWAMIIPSLISPFGLYL 200
Cdd:TIGR03262  70 VVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGllggfsiygFWGIVIGEVFYTFPHAL 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  201 MWIF-SEQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVTCALFTIVATWNNYFLPLIMLKDAN-----WYPLTIGL 274
Cdd:TIGR03262 150 MILVtALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFGVPKVIGGDYNvlatdIYKQVIGQ 229

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 289178266  275 NQWKDQASTaggqaiqnlvitgSMITIIPLVVAFLL---LQKYWQSGLAAGAV 324
Cdd:TIGR03262 230 QNFPMGAVV-------------GVLLLLPALLAFGIdraIQRRQRAQLSSRSV 269
modB PRK09421
molybdate ABC transporter permease subunit;
205-242 2.03e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 41.83  E-value: 2.03e-04
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 289178266 205 SEQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVT 242
Cdd:PRK09421 114 SLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIA 151
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
199-238 2.31e-03

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 39.04  E-value: 2.31e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|
gi 289178266 199 YLMWIFSEQAVPTELLEAARVDGASEARTFFTVALPLLSP 238
Cdd:PRK10561 159 FLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLALPLIAP 198
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 130-231 2.91e-03

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 37.91  E-value: 2.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 130 ATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQFLLFAK------LGLTNTPWAMIIPS--LISPF--GLY 199
Cdd:NF038017  12 AALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRsgplgfLGLLYTPTAMIIAQavLALPIvaGLT 91

                         90       100       110
                 ....*....|....*....|....*....|..
gi 289178266 200 LMWIfseQAVPTELLEAARVDGASEARTFFTV 231
Cdd:NF038017  92 LAAV---QGLDPELRLQILSLGATRWQALWTL 120
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 101-242 6.52e-03

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 37.34  E-value: 6.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 101 IKTVFTYQDGIFGRwFLNTLFYVIVGAGGATLLAIMGGYALAKFRfPGRKAVFAVIIGAISVPGIALAVpqfLLFAKLGL 180
Cdd:COG1174    6 IEWLADNRDGILAL-LLEHLLLVLLALLIALLIAVPLGILITRRR-RLAGLVLGVANILQTIPSLALLA---LLIPLLGI 80

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 181 TNTPwAMI------IPSLISPF--GLylmwifseQAVPTELLEAARVDGASEARTFFTVALPLLSPGIVT 242
Cdd:COG1174   81 GPAP-AIIalvlyaLLPILRNTytGL--------RSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILA 141
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 92-255 8.76e-03

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 37.29  E-value: 8.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266  92 GKTFALWdniKTVFTyqDGIFGRWFLNTLFYVIVGAGGATLLAIMGGYALAKFRFPGRKAVFAVIIGAISVPGIALAVPQ 171
Cdd:PRK15050  56 GLGLATY---RAVLG--SPDFRGALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAF 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 289178266 172 FLLFAKLGLTNTPWAMIIPSLISPFG-LYLMW--IFSEQAV----------------PTELLEAARVDGASEARTFFTVA 232
Cdd:PRK15050 131 TFLYGSAGSVNIALQRLFGLEAPPLDfLYSPGgvILAEITFytpfvvrpllaafaqlDARQLEAAASLGASPWRVARRVI 210

                        170       180
                 ....*....|....*....|...
gi 289178266 233 LPLLSPGIVTCALFTIVATWNNY 255
Cdd:PRK15050 211 LPEAWPALAAGGSLCLLLTLNEF 233
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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