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Conserved domains on  [gi|284016452|gb|ADB62403|]
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hypothetical protein Htur_3541 [Haloterrigena turkmenica DSM 5511]

Protein Classification

preprotein translocase subunit Sec61beta( domain architecture ID 10011652)

preprotein translocase subunit Sec61beta is a component of the protein translocase complex involved in protein export

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK01253 PRK01253
preprotein translocase subunit Sec61beta;
1-53 6.95e-21

preprotein translocase subunit Sec61beta;


:

Pssm-ID: 179263  Cd Length: 54  Bit Score: 76.11  E-value: 6.95e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 284016452  1 MDRGQNSGGLMSSAGLVRYFDsEDSNAIKIDPKTVIATGVMIGVLVQLLTFVA 53
Cdd:PRK01253  1 MKKKKEGGGLMSSAGLIRYFE-EETEAIKIDPKTVIAIGLALGIFVLVLNALF 52
 
Name Accession Description Interval E-value
PRK01253 PRK01253
preprotein translocase subunit Sec61beta;
1-53 6.95e-21

preprotein translocase subunit Sec61beta;


Pssm-ID: 179263  Cd Length: 54  Bit Score: 76.11  E-value: 6.95e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 284016452  1 MDRGQNSGGLMSSAGLVRYFDsEDSNAIKIDPKTVIATGVMIGVLVQLLTFVA 53
Cdd:PRK01253  1 MKKKKEGGGLMSSAGLIRYFE-EETEAIKIDPKTVIAIGLALGIFVLVLNALF 52
SBH1 COG4023
Preprotein translocase subunit SecG (Sec61beta) [Intracellular trafficking, secretion, and ...
 1-53 1.13e-19

Preprotein translocase subunit SecG (Sec61beta) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443201  Cd Length: 55  Bit Score: 72.95  E-value: 1.13e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 284016452  1 MDRGQNSGGLMSSAGLVRYFDsEDSNAIKIDPKTVIATGVMIGVLVQLLTFVA 53
Cdd:COG4023   1 MKKKKKGGGLMSSAGLVRYFE-EDTKGIKIDPKTVVAIGIALGVIVIILNILL 52
Sec61_beta pfam03911
Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61 ...
 15-53 2.65e-10

Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane.


Pssm-ID: 427582  Cd Length: 38  Bit Score: 48.91  E-value: 2.65e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 284016452  15 GLVRYFDsEDSNAIKIDPKTVIATGVMIGVLVQLLTFVA 53
Cdd:pfam03911  1 GLLRYYE-EDAPGIKIDPKVVLVLSLAFIASVILLHILA 38
 
Name Accession Description Interval E-value
PRK01253 PRK01253
preprotein translocase subunit Sec61beta;
1-53 6.95e-21

preprotein translocase subunit Sec61beta;


Pssm-ID: 179263  Cd Length: 54  Bit Score: 76.11  E-value: 6.95e-21
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 284016452  1 MDRGQNSGGLMSSAGLVRYFDsEDSNAIKIDPKTVIATGVMIGVLVQLLTFVA 53
Cdd:PRK01253  1 MKKKKEGGGLMSSAGLIRYFE-EETEAIKIDPKTVIAIGLALGIFVLVLNALF 52
SBH1 COG4023
Preprotein translocase subunit SecG (Sec61beta) [Intracellular trafficking, secretion, and ...
 1-53 1.13e-19

Preprotein translocase subunit SecG (Sec61beta) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443201  Cd Length: 55  Bit Score: 72.95  E-value: 1.13e-19
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|...
gi 284016452  1 MDRGQNSGGLMSSAGLVRYFDsEDSNAIKIDPKTVIATGVMIGVLVQLLTFVA 53
Cdd:COG4023   1 MKKKKKGGGLMSSAGLVRYFE-EDTKGIKIDPKTVVAIGIALGVIVIILNILL 52
Sec61_beta pfam03911
Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61 ...
 15-53 2.65e-10

Sec61beta family; This family consists of homologs of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane.


Pssm-ID: 427582  Cd Length: 38  Bit Score: 48.91  E-value: 2.65e-10
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 284016452  15 GLVRYFDsEDSNAIKIDPKTVIATGVMIGVLVQLLTFVA 53
Cdd:pfam03911  1 GLLRYYE-EDAPGIKIDPKVVLVLSLAFIASVILLHILA 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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