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Conserved domains on  [gi|283099970|gb|ADB08275|]
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envelope glycoprotein gL [Macaca mulatta rhadinovirus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_glycop_gL super family cl27833
Viral glycoprotein L; GL forms a complex with gH, a glycoprotein known to be essential for ...
 24-118 1.52e-08

Viral glycoprotein L; GL forms a complex with gH, a glycoprotein known to be essential for entry of HSV-1 into cells and virus-induced cell fusion. It is a hetero-oligomer of gH and gL which is incorporated into virions and transported to the cell surface which acts during entry of virus into cells


The actual alignment was detected with superfamily member PHA03152:

Pssm-ID: 474974  Cd Length: 138  Bit Score: 50.78  E-value: 1.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283099970  24 LVVNPCCKIIPLSDFIFPEPFEIASFHLTNLALCPGLCTATL---RYKADRSTTEICVNGFHLRAFFIRILYKLNYSVpr 100
Cdd:PHA03152  21 IIANPCCKIFALNETLIPSIYDINWIYITDPHTCGGFSIAQVfqrRSAQHMSTLYVCSNGFNVISFLLAVLKKLPLNA-- 98

                         90
                 ....*....|....*...
gi 283099970 101 EELQLLNYMQYSLDEFLA 118
Cdd:PHA03152  99 EEQNFKNHLITLQNSFLS 116
 
Name Accession Description Interval E-value
PHA03152 PHA03152
hypothetical protein; Provisional
 24-118 1.52e-08

hypothetical protein; Provisional


Pssm-ID: 165423  Cd Length: 138  Bit Score: 50.78  E-value: 1.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283099970  24 LVVNPCCKIIPLSDFIFPEPFEIASFHLTNLALCPGLCTATL---RYKADRSTTEICVNGFHLRAFFIRILYKLNYSVpr 100
Cdd:PHA03152  21 IIANPCCKIFALNETLIPSIYDINWIYITDPHTCGGFSIAQVfqrRSAQHMSTLYVCSNGFNVISFLLAVLKKLPLNA-- 98

                         90
                 ....*....|....*...
gi 283099970 101 EELQLLNYMQYSLDEFLA 118
Cdd:PHA03152  99 EEQNFKNHLITLQNSFLS 116
Phage_glycop_gL pfam11108
Viral glycoprotein L; GL forms a complex with gH, a glycoprotein known to be essential for ...
 29-120 4.20e-08

Viral glycoprotein L; GL forms a complex with gH, a glycoprotein known to be essential for entry of HSV-1 into cells and virus-induced cell fusion. It is a hetero-oligomer of gH and gL which is incorporated into virions and transported to the cell surface which acts during entry of virus into cells


Pssm-ID: 463223  Cd Length: 98  Bit Score: 48.66  E-value: 4.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283099970   29 CCKIIPLSDFIFPEPFEIASFHLTNLALCPGLCTATLRYKADRST--TEICVNGFHLRAFFIRILYKLNYSV--PREELQ 104
Cdd:pfam11108   1 CCHVKALTATPLPSAFSIVNIYLHSPQTCNGTSVAQLYSNTTGGNvsTIVCVNGFNLMSFLLAVLRRLLVNSalQKFYDE 80

                          90
                  ....*....|....*.
gi 283099970  105 LLNYMQYSLDEFLAAF 120
Cdd:pfam11108  81 LLTYLNGFLTQFSVGF 96
 
Name Accession Description Interval E-value
PHA03152 PHA03152
hypothetical protein; Provisional
 24-118 1.52e-08

hypothetical protein; Provisional


Pssm-ID: 165423  Cd Length: 138  Bit Score: 50.78  E-value: 1.52e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283099970  24 LVVNPCCKIIPLSDFIFPEPFEIASFHLTNLALCPGLCTATL---RYKADRSTTEICVNGFHLRAFFIRILYKLNYSVpr 100
Cdd:PHA03152  21 IIANPCCKIFALNETLIPSIYDINWIYITDPHTCGGFSIAQVfqrRSAQHMSTLYVCSNGFNVISFLLAVLKKLPLNA-- 98

                         90
                 ....*....|....*...
gi 283099970 101 EELQLLNYMQYSLDEFLA 118
Cdd:PHA03152  99 EEQNFKNHLITLQNSFLS 116
Phage_glycop_gL pfam11108
Viral glycoprotein L; GL forms a complex with gH, a glycoprotein known to be essential for ...
 29-120 4.20e-08

Viral glycoprotein L; GL forms a complex with gH, a glycoprotein known to be essential for entry of HSV-1 into cells and virus-induced cell fusion. It is a hetero-oligomer of gH and gL which is incorporated into virions and transported to the cell surface which acts during entry of virus into cells


Pssm-ID: 463223  Cd Length: 98  Bit Score: 48.66  E-value: 4.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 283099970   29 CCKIIPLSDFIFPEPFEIASFHLTNLALCPGLCTATLRYKADRST--TEICVNGFHLRAFFIRILYKLNYSV--PREELQ 104
Cdd:pfam11108   1 CCHVKALTATPLPSAFSIVNIYLHSPQTCNGTSVAQLYSNTTGGNvsTIVCVNGFNLMSFLLAVLRRLLVNSalQKFYDE 80

                          90
                  ....*....|....*.
gi 283099970  105 LLNYMQYSLDEFLAAF 120
Cdd:pfam11108  81 LLTYLNGFLTQFSVGF 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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