NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|281416549|ref|YP_003347350|]
View 

holin [Enterococcus phage phiFL2A]

Protein Classification

hemolysin XhlA family protein( domain architecture ID 10566689)

hemolysin XhlA family protein similar to Bacillus subtilis protein XhlA that is associated with cell lysis upon induction of PbsX

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
XhlA pfam10779
Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most ...
 8-77 7.49e-20

Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.


:

Pssm-ID: 402419 [Multi-domain]  Cd Length: 67  Bit Score: 75.01  E-value: 7.49e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281416549   8 DMVERLVRIETKLDNYEllrEKTEDAKEKADYAFSIAKNNVEDIKEIKENQKWTWRTIAGIGVSVVVYLF 77
Cdd:pfam10779  1 EIKERLARIETKLDNLE---ERVDKLERKAAEAETKIKNLCEDLKKIESNQKWLIRTIIGALISAVIYLI 67
 
Name Accession Description Interval E-value
XhlA pfam10779
Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most ...
 8-77 7.49e-20

Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.


Pssm-ID: 402419 [Multi-domain]  Cd Length: 67  Bit Score: 75.01  E-value: 7.49e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281416549   8 DMVERLVRIETKLDNYEllrEKTEDAKEKADYAFSIAKNNVEDIKEIKENQKWTWRTIAGIGVSVVVYLF 77
Cdd:pfam10779  1 EIKERLARIETKLDNLE---ERVDKLERKAAEAETKIKNLCEDLKKIESNQKWLIRTIIGALISAVIYLI 67
 
Name Accession Description Interval E-value
XhlA pfam10779
Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most ...
 8-77 7.49e-20

Haemolysin XhlA; XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.


Pssm-ID: 402419 [Multi-domain]  Cd Length: 67  Bit Score: 75.01  E-value: 7.49e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281416549   8 DMVERLVRIETKLDNYEllrEKTEDAKEKADYAFSIAKNNVEDIKEIKENQKWTWRTIAGIGVSVVVYLF 77
Cdd:pfam10779  1 EIKERLARIETKLDNLE---ERVDKLERKAAEAETKIKNLCEDLKKIESNQKWLIRTIIGALISAVIYLI 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH