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Conserved domains on  [gi|27805127|emb|CAD57148|]
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sda beta-1,4-GalNAc transferase, partial [Homo sapiens]

Protein Classification

glycosyltransferase family 2 protein( domain architecture ID 10455355)

glycosyltransferase family 2 protein catalyzes the transfer of saccharide moieties from a donor to an acceptor to form glycosidic bonds

CATH:  3.90.550.10
CAZY:  GT2
EC:  2.4.-.-
Gene Ontology:  GO:0016757
PubMed:  12691742|9445404
SCOP:  3000077

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glycos_transf_2 pfam00535
Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, ...
 324-430 2.51e-15

Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.


:

Pssm-ID: 425738 [Multi-domain]  Cd Length: 166  Bit Score: 73.97  E-value: 2.51e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127   324 TIATKTFLRPHKLMIMLRSIRE-YYPDLTVIVADDS--------QKPLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTK 394
Cdd:pfam00535   1 SVIIPTYNEEKYLLETLESLLNqTYPNFEIIVVDDGstdgtveiAEEYAKKDPRVRVIRLPENRGKAGARNAGLRAATGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 27805127   395 YVLWVDDDFLFNEEtKIEVLVDVLEKTELDVVGGSV 430
Cdd:pfam00535  81 YIAFLDADDEVPPD-WLEKLVEALEEDGADVVVGSR 115
 
Name Accession Description Interval E-value
Glycos_transf_2 pfam00535
Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, ...
 324-430 2.51e-15

Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.


Pssm-ID: 425738 [Multi-domain]  Cd Length: 166  Bit Score: 73.97  E-value: 2.51e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127   324 TIATKTFLRPHKLMIMLRSIRE-YYPDLTVIVADDS--------QKPLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTK 394
Cdd:pfam00535   1 SVIIPTYNEEKYLLETLESLLNqTYPNFEIIVVDDGstdgtveiAEEYAKKDPRVRVIRLPENRGKAGARNAGLRAATGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 27805127   395 YVLWVDDDFLFNEEtKIEVLVDVLEKTELDVVGGSV 430
Cdd:pfam00535  81 YIAFLDADDEVPPD-WLEKLVEALEEDGADVVVGSR 115
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
 340-492 9.14e-11

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 61.64  E-value: 9.14e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127 340 LRSIREY-YPDLTVIVADD-SQ-------KPLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFNEEtK 410
Cdd:COG0463  21 LESLLAQtYPDFEIIVVDDgSTdgtaeilRELAAKDPRIRVIRLERNRGKGAARNAGLAAARGDYIAFLDADDQLDPE-K 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127 411 IEVLVDVLEKTELDVVGGSVL---GNVFQFKLlleqsengacLHKRMGFFQPLDGFPSCvvTSGvvnFFLAHTERLQRVG 487
Cdd:COG0463 100 LEELVAALEEGPADLVYGSRLireGESDLRRL----------GSRLFNLVRLLTNLPDS--TSG---FRLFRREVLEELG 164


                ....*
gi 27805127 488 FDPRL 492
Cdd:COG0463 165 FDEGF 169
Glyco_tranf_GTA_type cd00761
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
 336-428 1.92e-07

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


Pssm-ID: 132997 [Multi-domain]  Cd Length: 156  Bit Score: 50.97  E-value: 1.92e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127 336 LMIMLRSIREY-YPDLTVIVADD--SQKPLEI------KDNHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFn 406
Cdd:cd00761  12 LERCLESLLAQtYPNFEVIVVDDgsTDGTLEIleeyakKDPRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLL- 90

                        90       100
                ....*....|....*....|...
gi 27805127 407 EETKIEVLVDVLEK-TELDVVGG 428
Cdd:cd00761  91 LPDWLERLVAELLAdPEADAVGG 113
glyco_TIGR04440 TIGR04440
glycosyltransferase domain; This model describes a putative glycotransferase domain, related ...
 323-431 2.54e-07

glycosyltransferase domain; This model describes a putative glycotransferase domain, related to the group 2 family glycosyltransferases of pfam00535.


Pssm-ID: 275233  Cd Length: 215  Bit Score: 51.53  E-value: 2.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127   323 VTIATKTFLRPHKLMIMLRSIREYYPDLTVIVADDSQKP---------LEIKDNHVEYYTMPFGKGWFAGRNL-AISQVT 392
Cdd:TIGR04440   2 LTIIIPTYNRPEYLKRWLRYYSDFGCDYRIIIADSSDEKfnennlkvfKNYSNPNITYLHYPDLGVPFYEKLLdALEQVE 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 27805127   393 TKYVLWVDDDFLFNEETkIEVLVDVLEKT-ELDVVGGSVL 431
Cdd:TIGR04440  82 TPYVVICADDDFIIPSG-LTECLSFLEANpDYSAAQGRYV 120
 
Name Accession Description Interval E-value
Glycos_transf_2 pfam00535
Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, ...
 324-430 2.51e-15

Glycosyl transferase family 2; Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.


Pssm-ID: 425738 [Multi-domain]  Cd Length: 166  Bit Score: 73.97  E-value: 2.51e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127   324 TIATKTFLRPHKLMIMLRSIRE-YYPDLTVIVADDS--------QKPLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTK 394
Cdd:pfam00535   1 SVIIPTYNEEKYLLETLESLLNqTYPNFEIIVVDDGstdgtveiAEEYAKKDPRVRVIRLPENRGKAGARNAGLRAATGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 27805127   395 YVLWVDDDFLFNEEtKIEVLVDVLEKTELDVVGGSV 430
Cdd:pfam00535  81 YIAFLDADDEVPPD-WLEKLVEALEEDGADVVVGSR 115
WcaA COG0463
Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]; ...
 340-492 9.14e-11

Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 440231 [Multi-domain]  Cd Length: 208  Bit Score: 61.64  E-value: 9.14e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127 340 LRSIREY-YPDLTVIVADD-SQ-------KPLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFNEEtK 410
Cdd:COG0463  21 LESLLAQtYPDFEIIVVDDgSTdgtaeilRELAAKDPRIRVIRLERNRGKGAARNAGLAAARGDYIAFLDADDQLDPE-K 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127 411 IEVLVDVLEKTELDVVGGSVL---GNVFQFKLlleqsengacLHKRMGFFQPLDGFPSCvvTSGvvnFFLAHTERLQRVG 487
Cdd:COG0463 100 LEELVAALEEGPADLVYGSRLireGESDLRRL----------GSRLFNLVRLLTNLPDS--TSG---FRLFRREVLEELG 164


                ....*
gi 27805127 488 FDPRL 492
Cdd:COG0463 165 FDEGF 169
WcaE COG1216
Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism];
323-417 5.81e-08

Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism];


Pssm-ID: 440829 [Multi-domain]  Cd Length: 202  Bit Score: 53.07  E-value: 5.81e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127 323 VTIATKTFLRPHKLMIMLRSIREY-YPDLTVIVADDS------QKPLEIKDNHVEYYTMPFGKGWFAGRNLAISQVTTKY 395
Cdd:COG1216   5 VSVVIPTYNRPELLRRCLESLLAQtYPPFEVIVVDNGstdgtaELLAALAFPRVRVIRNPENLGFAAARNLGLRAAGGDY 84

                        90       100
                ....*....|....*....|..
gi 27805127 396 VLWVDDDFLFNEETkIEVLVDV 417
Cdd:COG1216  85 LLFLDDDTVVEPDW-LERLLAA 105
Glyco_tranf_GTA_type cd00761
Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a ...
 336-428 1.92e-07

Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.


Pssm-ID: 132997 [Multi-domain]  Cd Length: 156  Bit Score: 50.97  E-value: 1.92e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127 336 LMIMLRSIREY-YPDLTVIVADD--SQKPLEI------KDNHVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFn 406
Cdd:cd00761  12 LERCLESLLAQtYPNFEVIVVDDgsTDGTLEIleeyakKDPRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLL- 90

                        90       100
                ....*....|....*....|...
gi 27805127 407 EETKIEVLVDVLEK-TELDVVGG 428
Cdd:cd00761  91 LPDWLERLVAELLAdPEADAVGG 113
glyco_TIGR04440 TIGR04440
glycosyltransferase domain; This model describes a putative glycotransferase domain, related ...
 323-431 2.54e-07

glycosyltransferase domain; This model describes a putative glycotransferase domain, related to the group 2 family glycosyltransferases of pfam00535.


Pssm-ID: 275233  Cd Length: 215  Bit Score: 51.53  E-value: 2.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127   323 VTIATKTFLRPHKLMIMLRSIREYYPDLTVIVADDSQKP---------LEIKDNHVEYYTMPFGKGWFAGRNL-AISQVT 392
Cdd:TIGR04440   2 LTIIIPTYNRPEYLKRWLRYYSDFGCDYRIIIADSSDEKfnennlkvfKNYSNPNITYLHYPDLGVPFYEKLLdALEQVE 81

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 27805127   393 TKYVLWVDDDFLFNEETkIEVLVDVLEKT-ELDVVGGSVL 431
Cdd:TIGR04440  82 TPYVVICADDDFIIPSG-LTECLSFLEANpDYSAAQGRYV 120
BcsA COG1215
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1, ...
 339-431 2.92e-04

Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility];


Pssm-ID: 440828 [Multi-domain]  Cd Length: 303  Bit Score: 43.19  E-value: 2.92e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127 339 MLRSIRE-YYP--DLTVIVADDSQKP--------LEIKDNHVEYYTMPF--GKGWfaGRNLAISQVTTKYVLWVDDDFLF 405
Cdd:COG1215  47 TLRSLLAqDYPkeKLEVIVVDDGSTDetaeiareLAAEYPRVRVIERPEngGKAA--ALNAGLKAARGDIVVFLDADTVL 124

                        90       100
                ....*....|....*....|....*.
gi 27805127 406 NEETkIEVLVDVLEKTELDVVGGSVL 431
Cdd:COG1215 125 DPDW-LRRLVAAFADPGVGASGANLA 149
GT_2_like_c cd04186
Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse ...
 340-463 2.19e-03

Subfamily of Glycosyltransferase Family GT2 of unknown function; GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.


Pssm-ID: 133029 [Multi-domain]  Cd Length: 166  Bit Score: 39.08  E-value: 2.19e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27805127 340 LRSIREY-YPDLTVIVAD-DSQKPL--EIKDN--HVEYYTMPFGKGWFAGRNLAISQVTTKYVLWVDDDFLFNEETkIEV 413
Cdd:cd04186  16 LDSLLAQtYPDFEVIVVDnASTDGSveLLRELfpEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTVVEPGA-LLE 94

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|
gi 27805127 414 LVDVLEKtELDVvgGSVLGNVfqfkllleqseNGACLHKRMGFFQPLDGF 463
Cdd:cd04186  95 LLDAAEQ-DPDV--GIVGPKV-----------SGAFLLVRREVFEEVGGF 130
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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