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Conserved domains on  [gi|27753537|dbj|BAC55197|]
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ATPase subunit 6 (mitochondrion) [Branchiostoma belcheri]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009614)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-227 2.14e-92

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 177230  Cd Length: 227  Bit Score: 270.28  E-value: 2.14e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLML 80
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   81 MTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLR 160
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27753537  161 LTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDENL 227
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
 
Name Accession Description Interval E-value
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-227 2.14e-92

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 270.28  E-value: 2.14e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLML 80
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   81 MTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLR 160
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27753537  161 LTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDENL 227
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-227 3.87e-60

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 188.57  E-value: 3.87e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537     5 LFSQFDSP--WLFNIPLVILAMLIPWKLFITSGSG---WVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLM 79
Cdd:TIGR01131   1 LFSQFDISpiTLFSLTLLSLILLLSLLIFLISSSLsrwLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    80 LMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGL 159
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27753537   160 RLTANLTAGHLLMHLISSAVLGLMelSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDENL 227
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSLM--SSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-223 6.62e-40

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 134.45  E-value: 6.62e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537  66 GFSWAVLFSSLMLMLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVV 145
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27753537 146 ETLSIFMRPLALGLRLTANLTAGHLLMHLISSAVLGLMelsGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYL 223
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLL---SSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP-synt_A pfam00119
ATP synthase A chain;
19-223 5.16e-35

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 123.75  E-value: 5.16e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    19 LVILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPL-NKKGFSWAVLFSSLMLMLMTLNVIGLF---PYTFT 94
Cdd:pfam00119   6 IVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIgKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    95 PTTQLSMNLGLAVPLWLGTVIYGFRNHPTIA-LAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLRLTANLTAGHLLMH 173
Cdd:pfam00119  86 VTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLL 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 27753537   174 LISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYL 223
Cdd:pfam00119 166 LLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYI 215
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 56-223 1.47e-24

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 96.30  E-value: 1.47e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537  56 GQVMQPLNKKGFSWAVLFSSLMLMLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIA-LAHLCPEGA 134
Cdd:COG0356  44 NQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLKHLFFPPF 123

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537 135 PnLLIPVLVVVETLSIFMRPLALGLRLTANLTAGHLLMHLISSAVLGLMelsgvLSVITLVLLVFLTMLEIAVALIQGYV 214
Cdd:COG0356 124 P-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFLL-----LGVLSLLLPVAWTAFELLVGFLQAYI 197


                ....*....
gi 27753537 215 FAILVTLYL 223
Cdd:COG0356 198 FTMLTAVYI 206
 
Name Accession Description Interval E-value
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-227 2.14e-92

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 270.28  E-value: 2.14e-92
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLML 80
Cdd:MTH00179   1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNRWLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   81 MTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLR 160
Cdd:MTH00179  81 LTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 27753537  161 LTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDENL 227
Cdd:MTH00179 161 LTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQENL 227
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 1-226 2.62e-90

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 265.20  E-value: 2.62e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLML 80
Cdd:MTH00132   1 MTLSFFDQFMSPTYLGIPLIALALTLPWILFPTPTSRWLNNRLLTLQGWFINRFTQQLLLPLNVGGHKWALLLTSLMLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   81 MTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLR 160
Cdd:MTH00132  81 ITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPVLIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27753537  161 LTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDEN 226
Cdd:MTH00132 161 LTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 1-226 1.37e-86

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 255.66  E-value: 1.37e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLML 80
Cdd:MTH00073   1 MNLSFFDQFLSPTLLGIPLIMLAMLLPWLLFPTPTNKWLNNRLSTLQIWFLQNFTKQLMLPLNTPGHKWALILTSLMVFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   81 MTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLR 160
Cdd:MTH00073  81 ITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPILIIIETISLFIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27753537  161 LTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDEN 226
Cdd:MTH00073 161 LTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-226 4.04e-86

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 254.36  E-value: 4.04e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLML 80
Cdd:MTH00120   1 MNLNFFDQFSSPELLGIPLILLAMLIPALLIPSPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSLMLLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   81 MTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLR 160
Cdd:MTH00120  81 LLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLALGVR 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27753537  161 LTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDEN 226
Cdd:MTH00120 161 LTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYLQEN 226
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 1-226 2.76e-73

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 221.75  E-value: 2.76e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPWKLFITSGSgWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLML 80
Cdd:MTH00101   1 MNENLFASFITPTILGLPIVTLIIMFPSLLFPTPNR-LINNRLISIQQWLIQLTSKQMMTIHNTKGQTWSLMLMSLILFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   81 MTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLR 160
Cdd:MTH00101  80 GSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGFRNKTKASLAHFLPQGTPTPLIPMLVIIETISLFIQPMALAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27753537  161 LTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDEN 226
Cdd:MTH00101 160 LTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHDN 225
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 5-227 3.87e-60

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 188.57  E-value: 3.87e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537     5 LFSQFDSP--WLFNIPLVILAMLIPWKLFITSGSG---WVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLM 79
Cdd:TIGR01131   1 LFSQFDISpiTLFSLTLLSLILLLSLLIFLISSSLsrwLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    80 LMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGL 159
Cdd:TIGR01131  81 ILISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSV 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27753537   160 RLTANLTAGHLLMHLISSAVLGLMelSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDENL 227
Cdd:TIGR01131 161 RLFANISAGHLLLTLLSGLLFSLM--SSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 4-227 8.87e-54

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 172.47  E-value: 8.87e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    4 SLFSQFDSPWLFNIPLVILAMLIP--WKLFITSgSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLMLM 81
Cdd:MTH00035   6 SIFGQFSPDTILFIPLTLLSSVIAlsWLFFINP-TNWLPSRSQSIWLTFRQEILKLIFQNTNPNTAPWAGLLTTVFILIL 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   82 TLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLRL 161
Cdd:MTH00035  85 SINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSLFAQPIALGLRL 164

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27753537  162 TANLTAGHLLMHLISSAVLGLMELSgVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDENL 227
Cdd:MTH00035 165 AANLTAGHLLIFLLSTAIWELSNSP-LISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 1-225 7.64e-50

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 161.87  E-value: 7.64e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPWkLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLML 80
Cdd:MTH00157   1 MMTNLFSIFDPSTSFNLSLNWLSTFLGL-LFIPSSFWLIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFI 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   81 MTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLR 160
Cdd:MTH00157  80 LFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFGWINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVR 159

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 27753537  161 LTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVfltMLEIAVALIQGYVFAILVTLYLDE 225
Cdd:MTH00157 160 LAANMIAGHLLLTLLGNTGPSLSSMILSILILIQILLL---ILESAVAIIQSYVFSVLSTLYSSE 221
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-227 1.17e-44

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 149.03  E-value: 1.17e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPW-KLFITSGSGWVG-TRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLML 78
Cdd:MTH00176   1 MLVDLFSSFDPPNKNIFSMISLSWITLLlFLLLMPSSVWFCpSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   79 MLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALG 158
Cdd:MTH00176  81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27753537  159 LRLTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDENL 227
Cdd:MTH00176 161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDEHP 229
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 1-225 5.53e-41

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 139.62  E-value: 5.53e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIPLVILAMLIPWKLFITSGSG--WVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLML 78
Cdd:MTH00173   1 MMVDLFSSFDDHNSSFSSLSFLMWLLSLMSLFFFSSSvwVSSSNLSSVFKLFVLTVSSQVTRSSGLNLGGFSLLLSSLFL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   79 MLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALG 158
Cdd:MTH00173  81 FLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSILIRPLTLT 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27753537  159 LRLTANLTAGHLLMHLISSAVLGLMELSGVLSV-ITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDE 225
Cdd:MTH00173 161 VRLLANISAGHIVLTLIGNYLSSSLFSSSVVSLlLVLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDE 228
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 66-223 6.62e-40

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 134.45  E-value: 6.62e-40
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537  66 GFSWAVLFSSLMLMLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVV 145
Cdd:cd00310   1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 27753537 146 ETLSIFMRPLALGLRLTANLTAGHLLMHLISSAVLGLMelsGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYL 223
Cdd:cd00310  81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLL---SSVGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYI 155
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-227 1.33e-38

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 133.63  E-value: 1.33e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNI--PLVILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLML 78
Cdd:MTH00172   1 MSSSYFDQFNIVWLIGLtnSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   79 MLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLALG 158
Cdd:MTH00172  81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27753537  159 LRLTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDENL 227
Cdd:MTH00172 161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTI 229
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 1-225 5.34e-37

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 129.47  E-value: 5.34e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFD---SPWLFNIPLVILAMLIPWKLFITSGSGWVG-TRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSL 76
Cdd:MTH00005   1 MLTDIFSSFDpatNSLFNNLSSTAFWAFNFSIILLLSSSFWITpNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   77 MLMLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVETLSIFMRPLA 156
Cdd:MTH00005  81 FTMIILMNLSGLLPYVFSTSSHLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPIT 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27753537  157 LGLRLTANLTAGHLLMHLISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDE 225
Cdd:MTH00005 161 LSFRLAANMSAGHIVLSLIGIYAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229
ATP-synt_A pfam00119
ATP synthase A chain;
19-223 5.16e-35

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 123.75  E-value: 5.16e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    19 LVILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPL-NKKGFSWAVLFSSLMLMLMTLNVIGLF---PYTFT 94
Cdd:pfam00119   6 IVALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIgKKKGRKFFPLLLTLFFFILVSNLLGLIpksPGGFT 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    95 PTTQLSMNLGLAVPLWLGTVIYGFRNHPTIA-LAHLCPEGAPNLLIPVLVVVETLSIFMRPLALGLRLTANLTAGHLLMH 173
Cdd:pfam00119  86 VTADINVTLALALIVFLLVHYYGIKKHGLGGyFKKLFVPPVPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLL 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 27753537   174 LISSAVLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYL 223
Cdd:pfam00119 166 LLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYI 215
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-223 5.09e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 119.34  E-value: 5.09e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537    1 MVGSLFSQFDSPWLFNIP---------------LVILAMLIPWKLFItsGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKK 65
Cdd:MTH00175   1 MLAAYFDQFNIIRLITIQaflgdwlvtftnssmMMVLAVIIFWLLLK--GDKLIPNRWQSIMELIYLNIRSVVHDNLGKS 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   66 GFSWAVLFSSLMLMLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVV 145
Cdd:MTH00175  79 GQKYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLI 158

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27753537  146 ETLSIFMRPLALGLRLTANLTAGHLLMHLISSAVLGLMELSG-VLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYL 223
Cdd:MTH00175 159 ETLSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNGLiILSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYL 237
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 56-223 1.47e-24

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 96.30  E-value: 1.47e-24
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537  56 GQVMQPLNKKGFSWAVLFSSLMLMLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIA-LAHLCPEGA 134
Cdd:COG0356  44 NQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADINVTLALALIVFVLVHYYGIKKKGLGGyLKHLFFPPF 123

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537 135 PnLLIPVLVVVETLSIFMRPLALGLRLTANLTAGHLLMHLISSAVLGLMelsgvLSVITLVLLVFLTMLEIAVALIQGYV 214
Cdd:COG0356 124 P-WLAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGLAPFLL-----LGVLSLLLPVAWTAFELLVGFLQAYI 197


                ....*....
gi 27753537 215 FAILVTLYL 223
Cdd:COG0356 198 FTMLTAVYI 206
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 62-227 5.02e-22

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 90.77  E-value: 5.02e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   62 LNKKGFSWAVLFSSLMLMLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPV 141
Cdd:MTH00174  83 LGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALAPL 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537  142 LVVVETLSIFMRPLALGLRLTANLTAGHLLMHLISSAVLGLMElSGVL--SVITLVLLVFLTMLEIAVALIQGYVFAILV 219
Cdd:MTH00174 163 LTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMIN-TGILigSFVPFAILIFVTILEMAVAIIQAYVFTLLT 241


                 ....*...
gi 27753537  220 TLYLDENL 227
Cdd:MTH00174 242 IVYLRDTV 249
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 20-223 1.18e-19

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 83.69  E-value: 1.18e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   20 VILAMLIPWKLFITSGSGWVG--TRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLMLMTLNVIGLFP-YTFTPT 96
Cdd:PRK05815  21 VLLGVLILLLFALVATRKLSGvpGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPT 100

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   97 TQLSMNLGLAVPLWLGTVIYGFRNHPTIA-LAHLCPEgapnlLIPVLVVVETLSIFMRPLALGLRLTANLTAGHLLMHLI 175
Cdd:PRK05815 101 ADINVTLALALIVFVLVIYYGIKKKGLGGyLKEFYLQ-----PHPLLLPIEIISEFSRPISLSLRLFGNMLAGELILALI 175

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 27753537  176 ssavLGLMELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYL 223
Cdd:PRK05815 176 ----ALLGGAGLLLALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYI 219
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 71-225 1.28e-13

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 66.93  E-value: 1.28e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   71 VLFSSLMLMLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNhpTIALAHLCPEGAPNLLIP-VLVVVETLS 149
Cdd:MTH00087  53 VISFFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFLSFLSK--SEKFSVYLSKGSDSFLKTfSMLFVEIVS 130

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 27753537  150 IFMRPLALGLRLTANLTAGHLLMHLISSavlglmelsgvLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYLDE 225
Cdd:MTH00087 131 ELSRPLALTLRLTVNLMVGHLISSLLNF-----------LGEKYVWLSILAIMMECFVAFIQSYIFSRLIYLYLNE 195
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 72-223 2.74e-13

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 67.85  E-value: 2.74e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   72 LFSSLMLMLMtLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIA-LAHLCPeGAPNLLIPVLVVVETLSI 150
Cdd:PRK13419 174 LLTVFFFILV-CNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGyLAHLTG-GTHWSLWIIMIPIEFIGL 251

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 27753537  151 FMRPLALGLRLTANLTAGHLLmhlissaVLGLMELSGVLS------VITLVLLVFLTMLEIAVALIQGYVFAILVTLYL 223
Cdd:PRK13419 252 FTKPFALTVRLFANMTAGHIV-------ILSLIFISFILKsyivavAVSVPFAIFIYLLELFVAFLQAYIFTMLSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 94-223 1.38e-07

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 51.04  E-value: 1.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   94 TPTTQLSMNLGLAVPLWLGTVIYGFRNHPTIALAHLCPEGAPNLLIPVLVVVE-TLSIFMRPLALGLRLTANLTAGHLLM 172
Cdd:PRK13417 217 TVTGDISVTMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVII 296

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 27753537  173 hlisSAVLGL--MELSGVLSVITLVLLVFLTMLEIAVALIQGYVFAILVTLYL 223
Cdd:PRK13417 297 ----LALMGFifQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFV 345
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 21-218 3.23e-04

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 40.45  E-value: 3.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   21 ILAMLIPWKLFITSGSGWVGTRSEMLMSQLTNTLMGQVMQPLNKKGFSWAVLFSSLMLMLMTLNVIGLFPYTFTPTTQLS 100
Cdd:PRK13421  29 IMAVLAAGSALATRRLSLAPGRLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLE 108

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537  101 MNLGLAVPLWLGTVIYGFRNHPtiALAHLCPEGAPNLLIPVLVVVETLSifmRPLALGLRLTANLTAGHLlmhlissaVL 180
Cdd:PRK13421 109 TDAALALIVFLATIYYGVRARG--VRGYLATFAEPTWVMIPLNLVEQLT---RTFSLIVRLFGNVMSGVF--------VI 175

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 27753537  181 GLmelsgVLSVITLVLLVFLTMLEIAVALIQGYVFAIL 218
Cdd:PRK13421 176 GI-----VLSLAGLLVPIPLMALDLLTGAVQAYIFAVL 208
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 72-223 1.26e-03

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 38.96  E-value: 1.26e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 27753537   72 LFSSLMLMLMTLNVIGLFPYTFTPTTQLSMNLGLAVPLWLGTVIYGFRNHPTiaLAHLCPEGAPNlliPVLVVVETLSIF 151
Cdd:PRK13420  77 FVGTLWIFILVANLIGLIPGFHSPTADLSVTAALALLVFFSVHWFGIRAEGL--REYLKHYLSPS---PFLLPFHLISEI 151

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 27753537  152 MRPLALGLRLTANLtaghllMHLISSAVLGLMeLSGVLSVITLVllvfltMLEIAVALIQGYVFAILVTLYL 223
Cdd:PRK13420 152 TRTLALAVRLFGNI------MSLELAALLVLL-VAGFLVPVPIL------MLHIIEALVQAYIFGMLALIYI 210
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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