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Conserved domains on  [gi|2708447|dbj|BAA24048|]
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nonstructural protein 1, partial [Influenza C virus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Flu_C_NS1 pfam03506
Influenza C non-structural protein (NS1); The influenza C virus genome consists of seven ...
 58-219 1.95e-98

Influenza C non-structural protein (NS1); The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1. This protein contains 6 conserved cysteines that may be functionally important, perhaps binding to a metal ion.


:

Pssm-ID: 460949  Cd Length: 162  Bit Score: 285.49  E-value: 1.95e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2708447     58 GELLFNGTILQAESPTMTPASVEMKGKKFPIDFAPSNIAPIGQNPIYLSPCIPNFDGNVWEATMYHHRGATLTKTMNCNC 137
Cdd:pfam03506   1 GEDKFNGSILLMAFPAMKMAEREEDGDKCPEDFAEKMIAPIGANLITESPCAPNFDEDAIEAGELHFNGAILQKEMNCMC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2708447    138 FQRTIWCHPNPSRMRLSYAFVLYCRNTKKICGYLIARQVAGIETGIRKCFRCIKSGFVMATDEISLTILQSIKSGAQLDP 217
Cdd:pfam03506  81 FARTEMCGKKFPIDFAPSAFALICQNPIKICGCIIAFDGAGIEAGIRHCFGAIKSGFMMANCEIRLIICHPIKSGAQLDP 160


                  ..
gi 2708447    218 YW 219
Cdd:pfam03506 161 AF 162
Flu_C_NS2 pfam03555
Influenza C non-structural protein (NS2); The influenza C virus genome consists of seven ...
 1-57 1.56e-34

Influenza C non-structural protein (NS2); The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 pfam03506 as well as the NS2 protein. The NS2 protein is only about 60 amino acids in length and of unknown function.


:

Pssm-ID: 281544  Cd Length: 57  Bit Score: 119.23  E-value: 1.56e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2708447      1 VKSTNLMAFVATKMLERQEDLDTCTEMQVEKMKTSTKARLRTESSFAPRTWEDAIKD 57
Cdd:pfam03555   1 VKSTNLMAFVATKMLERQEDLDTCTEMQVEKMKTSTKARLKTESSFAPRTWEDAIKD 57
 
Name Accession Description Interval E-value
Flu_C_NS1 pfam03506
Influenza C non-structural protein (NS1); The influenza C virus genome consists of seven ...
 58-219 1.95e-98

Influenza C non-structural protein (NS1); The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1. This protein contains 6 conserved cysteines that may be functionally important, perhaps binding to a metal ion.


Pssm-ID: 460949  Cd Length: 162  Bit Score: 285.49  E-value: 1.95e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2708447     58 GELLFNGTILQAESPTMTPASVEMKGKKFPIDFAPSNIAPIGQNPIYLSPCIPNFDGNVWEATMYHHRGATLTKTMNCNC 137
Cdd:pfam03506   1 GEDKFNGSILLMAFPAMKMAEREEDGDKCPEDFAEKMIAPIGANLITESPCAPNFDEDAIEAGELHFNGAILQKEMNCMC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2708447    138 FQRTIWCHPNPSRMRLSYAFVLYCRNTKKICGYLIARQVAGIETGIRKCFRCIKSGFVMATDEISLTILQSIKSGAQLDP 217
Cdd:pfam03506  81 FARTEMCGKKFPIDFAPSAFALICQNPIKICGCIIAFDGAGIEAGIRHCFGAIKSGFMMANCEIRLIICHPIKSGAQLDP 160


                  ..
gi 2708447    218 YW 219
Cdd:pfam03506 161 AF 162
Flu_C_NS2 pfam03555
Influenza C non-structural protein (NS2); The influenza C virus genome consists of seven ...
 1-57 1.56e-34

Influenza C non-structural protein (NS2); The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 pfam03506 as well as the NS2 protein. The NS2 protein is only about 60 amino acids in length and of unknown function.


Pssm-ID: 281544  Cd Length: 57  Bit Score: 119.23  E-value: 1.56e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2708447      1 VKSTNLMAFVATKMLERQEDLDTCTEMQVEKMKTSTKARLRTESSFAPRTWEDAIKD 57
Cdd:pfam03555   1 VKSTNLMAFVATKMLERQEDLDTCTEMQVEKMKTSTKARLKTESSFAPRTWEDAIKD 57
 
Name Accession Description Interval E-value
Flu_C_NS1 pfam03506
Influenza C non-structural protein (NS1); The influenza C virus genome consists of seven ...
 58-219 1.95e-98

Influenza C non-structural protein (NS1); The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1. This protein contains 6 conserved cysteines that may be functionally important, perhaps binding to a metal ion.


Pssm-ID: 460949  Cd Length: 162  Bit Score: 285.49  E-value: 1.95e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2708447     58 GELLFNGTILQAESPTMTPASVEMKGKKFPIDFAPSNIAPIGQNPIYLSPCIPNFDGNVWEATMYHHRGATLTKTMNCNC 137
Cdd:pfam03506   1 GEDKFNGSILLMAFPAMKMAEREEDGDKCPEDFAEKMIAPIGANLITESPCAPNFDEDAIEAGELHFNGAILQKEMNCMC 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2708447    138 FQRTIWCHPNPSRMRLSYAFVLYCRNTKKICGYLIARQVAGIETGIRKCFRCIKSGFVMATDEISLTILQSIKSGAQLDP 217
Cdd:pfam03506  81 FARTEMCGKKFPIDFAPSAFALICQNPIKICGCIIAFDGAGIEAGIRHCFGAIKSGFMMANCEIRLIICHPIKSGAQLDP 160


                  ..
gi 2708447    218 YW 219
Cdd:pfam03506 161 AF 162
Flu_C_NS1 pfam03506
Influenza C non-structural protein (NS1); The influenza C virus genome consists of seven ...
 1-157 2.40e-94

Influenza C non-structural protein (NS1); The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1. This protein contains 6 conserved cysteines that may be functionally important, perhaps binding to a metal ion.


Pssm-ID: 460949  Cd Length: 162  Bit Score: 275.09  E-value: 2.40e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2708447      1 VKSTNLMAFVATKMLERQEDLDTCTEMQVEKMKTSTKARLRTESSFAPRTWEDAIKDGELLFNGTILQAESPTMTPASVE 80
Cdd:pfam03506   6 NGSILLMAFPAMKMAEREEDGDKCPEDFAEKMIAPIGANLITESPCAPNFDEDAIEAGELHFNGAILQKEMNCMCFARTE 85

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2708447     81 MKGKKFPIDFAPSNIAPIGQNPIYLSPCIPNFDGNVWEATMYHHRGATLTKTMNCNCFQRTIWCHPNPSRMRLSYAF 157
Cdd:pfam03506  86 MCGKKFPIDFAPSAFALICQNPIKICGCIIAFDGAGIEAGIRHCFGAIKSGFMMANCEIRLIICHPIKSGAQLDPAF 162
Flu_C_NS2 pfam03555
Influenza C non-structural protein (NS2); The influenza C virus genome consists of seven ...
 1-57 1.56e-34

Influenza C non-structural protein (NS2); The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 pfam03506 as well as the NS2 protein. The NS2 protein is only about 60 amino acids in length and of unknown function.


Pssm-ID: 281544  Cd Length: 57  Bit Score: 119.23  E-value: 1.56e-34
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2708447      1 VKSTNLMAFVATKMLERQEDLDTCTEMQVEKMKTSTKARLRTESSFAPRTWEDAIKD 57
Cdd:pfam03555   1 VKSTNLMAFVATKMLERQEDLDTCTEMQVEKMKTSTKARLKTESSFAPRTWEDAIKD 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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